Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015707

Physical Location & Seq

Genomic Coordinates Reverse (-)

8795583 .. 8797239

Gene Structure 1657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1122100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATGCCCGTATCAATATTTCAGATAAAGTAGTCATACATACATGGCTGATCAACCATATCCTTCTATTCGCCATATTTATCTGCGACAGTGAAGAGAACTCGAGAGCCGCTATTGGTAAAATGGGAGTTACCGGGCGAGCAGTTGGAGATGTAATGGACAAAGTTAAAAACAGGCATTATCAGGTGGAAATCTGGCGTGCACCTTTGACGTTTGAAGCTATTCATGGTTCATCATGCGACGCTGGGATTAACCATCCAAATCAGTACTTTAACGAAAGCCAAGTTATCATAAAATCGAAGAACCGGTCTGCAGCGGAAGGGAGAGCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_lrg

Protein Analysis

112

Amino Acids

12.46

Weight (kDa)

7.86

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_lrg	PF04104	29 - 91	9.4e-09	Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015707)

Species	Orthologous Gene IDs
malus_domestica	MD16G1122100.v1.1
pyrus_communis	pycom16g10460
rosa_chinensis	RchiOBHm_Chr4g0417231 RchiOBHm_Chr4g0417241 RchiOBHm_Chr4g0417251 RchiOBHm_Chr4g0417261
rosa_laevigata	RLG00000007921
rosa_multiflora	Rmu_sc0000646.1_g000011 Rmu_sc0002370.1_g000020
rosa_samantha	Rh4AG209800 Rh4CG220900 Rh4DG207500 Rh4DG207600 Rh4DG207700
rosa_wichuraiana	Rw4G017730 Rw4G017740

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	111, 317
AfaI	GTAC	1 cut(s)	269
AgeI	ACCGGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw21I	GWGCWC	1 cut(s)	205
Alw44I	GTGCAC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AsiGI	ACCGGT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	1 cut(s)	264
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	136
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	111, 315
BlsI	GCNGC	2 cut(s)	112, 316
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	306
BseGI	GGATG	2 cut(s)	10, 256
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	326
BseYI	CCCAGC	1 cut(s)	245
BshTI	ACCGGT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	135, 307
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	111, 317
BspMAI	CTGCAG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	306
BssMI	GATC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	141, 201
BstF5I	GGATG	2 cut(s)	10, 256
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	10, 256
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	141, 201
Cfr10I	RCCGGY	1 cut(s)	306
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	306
CviAII	CATG	3 cut(s)	45, 227, 237
CviJI	RGCY	5 cut(s)	49, 110, 221, 282, 329
CviKI_1	RGCY	5 cut(s)	49, 110, 221, 282, 329
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	103
FaeI	CATG	3 cut(s)	48, 230, 240
FaiI	YATR	8 cut(s)	38, 42, 46, 60, 77, 228, 238, 293
FatI	CATG	3 cut(s)	44, 226, 236
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	111, 315
FokI	GGATG	2 cut(s)	17, 243
Fsp4HI	GCNGC	2 cut(s)	111, 315
GluI	GCNGC	2 cut(s)	111, 315
GsaI	CCCAGC	1 cut(s)	249
HapII	CCGG	2 cut(s)	135, 307
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	3 cut(s)	48, 230, 240
HpaII	CCGG	2 cut(s)	135, 307
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	74, 314
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	203, 314
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	48, 230, 240
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	6 cut(s)	148, 160, 170, 181, 231, 320
Lsp1109I	GCAGC	1 cut(s)	326
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	107, 313
MhlI	GDGCHC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	3 cut(s)	168, 252, 273
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	2 cut(s)	135, 307
MspR9I	CCNGG	1 cut(s)	136
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	3 cut(s)	48, 230, 240
PaeR7I	CTCGAG	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	222
PinAI	ACCGGT	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	112, 316
PspFI	CCCAGC	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	3 cut(s)	168, 252, 273
SatI	GCNGC	2 cut(s)	111, 315
Sau3AI	GATC	1 cut(s)	51
ScaI	AGTACT	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	4 cut(s)	189, 208, 215, 223
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SsiI	CCGC	2 cut(s)	111, 317
SspI	AATATT	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	104, 299
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	168, 252, 273
Tru9I	TTAA	3 cut(s)	168, 252, 273
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	215, 222
TspRI	CASTG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	222
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.