DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD16G1122100.v1.1 |
| pyrus_communis | pycom16g10460 |
| rosa_chinensis | RchiOBHm_Chr4g0417231 RchiOBHm_Chr4g0417241 RchiOBHm_Chr4g0417251 RchiOBHm_Chr4g0417261 |
| rosa_laevigata | RLG00000007921 |
| rosa_multiflora | Rmu_sc0000646.1_g000011 Rmu_sc0002370.1_g000020 |
| rosa_samantha | Rh4AG209800 Rh4CG220900 Rh4DG207500 Rh4DG207600 Rh4DG207700 |
| rosa_wichuraiana | Rw4G017730 Rw4G017740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 176 |
| AccII | CGCG | 2 cut(s) | 565, 1305 |
| AclWI | GGATC | 2 cut(s) | 286, 1047 |
| AcsI | RAATTY | 3 cut(s) | 55, 319, 491 |
| AfaI | GTAC | 4 cut(s) | 429, 452, 1176, 1241 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 176, 594, 946 |
| AflIII | ACRYGT | 1 cut(s) | 628 |
| AgsI | TTSAA | 4 cut(s) | 118, 614, 700, 1025 |
| AjiI | CACGTC | 1 cut(s) | 242 |
| AjnI | CCWGG | 3 cut(s) | 555, 941, 1010 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 159, 191 |
| AluBI | AGCT | 5 cut(s) | 86, 330, 677, 703, 731 |
| AluI | AGCT | 5 cut(s) | 86, 330, 677, 703, 731 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 332 |
| Alw26I | GTCTC | 5 cut(s) | 232, 407, 944, 1151, 1215 |
| AlwI | GGATC | 2 cut(s) | 286, 1047 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 26 |
| Ama87I | CYCGRG | 1 cut(s) | 530 |
| AoxI | GGCC | 3 cut(s) | 844, 891, 934 |
| ApeKI | GCWGC | 3 cut(s) | 32, 880, 1202 |
| ApoI | RAATTY | 3 cut(s) | 55, 319, 491 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 618 |
| AspLEI | GCGC | 3 cut(s) | 565, 1182, 1290 |
| AspS9I | GGNCC | 2 cut(s) | 845, 892 |
| AsuC2I | CCSGG | 1 cut(s) | 432 |
| AsuHPI | GGTGA | 2 cut(s) | 121, 204 |
| AvaI | CYCGRG | 1 cut(s) | 530 |
| BanII | GRGCYC | 1 cut(s) | 332 |
| BauI | CACGAG | 1 cut(s) | 571 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 332 |
| BbvCI | CCTCAGC | 2 cut(s) | 87, 1043 |
| BbvI | GCAGC | 3 cut(s) | 19, 892, 1214 |
| BccI | CCATC | 3 cut(s) | 208, 257, 971 |
| BceAI | ACGGC | 3 cut(s) | 624, 904, 972 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 948, 982 |
| BciT130I | CCWGG | 3 cut(s) | 557, 943, 1012 |
| BciVI | GTATCC | 1 cut(s) | 151 |
| BclI | TGATCA | 1 cut(s) | 313 |
| BcnI | CCSGG | 1 cut(s) | 432 |
| BcoDI | GTCTC | 5 cut(s) | 232, 407, 944, 1151, 1215 |
| BfaI | CTAG | 1 cut(s) | 1312 |
| BfoI | RGCGCY | 1 cut(s) | 1291 |
| BfuI | GTATCC | 1 cut(s) | 151 |
| BisI | GCNGC | 8 cut(s) | 33, 881, 907, 971, 1203, 1206, 1291, 1294 |
| BlsI | GCNGC | 8 cut(s) | 34, 882, 908, 972, 1204, 1207, 1292, 1295 |
| Bme1390I | CCNGG | 4 cut(s) | 432, 557, 943, 1012 |
| BmeT110I | CYCGRG | 1 cut(s) | 530 |
| BmgBI | CACGTC | 1 cut(s) | 242 |
| BmgT120I | GGNCC | 2 cut(s) | 845, 892 |
| BmiI | GGNNCC | 2 cut(s) | 168, 1279 |
| BmrFI | CCNGG | 4 cut(s) | 432, 557, 943, 1012 |
| BmsI | GCATC | 4 cut(s) | 13, 388, 700, 826 |
| BpmI | CTGGAG | 2 cut(s) | 62, 1176 |
| Bpu10I | CCTNAGC | 2 cut(s) | 87, 1043 |
| BpuMI | CCSGG | 1 cut(s) | 432 |
| BsaI | GGTCTC | 1 cut(s) | 944 |
| BsaJI | CCNNGG | 4 cut(s) | 555, 841, 941, 954 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 176, 594, 946 |
| Bse1I | ACTGG | 1 cut(s) | 595 |
| BseBI | CCWGG | 3 cut(s) | 557, 943, 1012 |
| BseDI | CCNNGG | 4 cut(s) | 555, 841, 941, 954 |
| BseGI | GGATG | 2 cut(s) | 97, 712 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 176, 594, 946 |
| BseMII | CTCAG | 8 cut(s) | 78, 80, 153, 198, 338, 723, 838, 1057 |
| BseNI | ACTGG | 1 cut(s) | 595 |
| BseRI | GAGGAG | 3 cut(s) | 142, 1097, 1100 |
| BseXI | GCAGC | 3 cut(s) | 19, 892, 1214 |
| BseYI | CCCAGC | 1 cut(s) | 876 |
| BsgI | GTGCAG | 1 cut(s) | 491 |
| Bsh1236I | CGCG | 2 cut(s) | 565, 1305 |
| Bsh1285I | CGRYCG | 1 cut(s) | 997 |
| BshFI | GGCC | 3 cut(s) | 846, 893, 936 |
| BsiEI | CGRYCG | 1 cut(s) | 997 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 332 |
| BsiHKCI | CYCGRG | 1 cut(s) | 530 |
| BsiSI | CCGG | 1 cut(s) | 432 |
| BslFI | GGGAC | 1 cut(s) | 368 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 176, 594, 946 |
| BsmAI | GTCTC | 5 cut(s) | 232, 407, 944, 1151, 1215 |
| BsmBI | CGTCTC | 1 cut(s) | 232 |
| BsmFI | GGGAC | 1 cut(s) | 368 |
| BsnI | GGCC | 3 cut(s) | 846, 893, 936 |
| Bso31I | GGTCTC | 1 cut(s) | 944 |
| BsoBI | CYCGRG | 1 cut(s) | 530 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 332 |
| Bsp143I | GATC | 6 cut(s) | 291, 313, 1052, 1064, 1102, 1272 |
| Bsp68I | TCGCGA | 1 cut(s) | 1305 |
| BspANI | GGCC | 3 cut(s) | 846, 893, 936 |
| BspCNI | CTCAG | 8 cut(s) | 79, 79, 154, 199, 337, 724, 837, 1056 |
| BspFNI | CGCG | 2 cut(s) | 565, 1305 |
| BspHI | TCATGA | 1 cut(s) | 403 |
| BspLI | GGNNCC | 2 cut(s) | 168, 1279 |
| BspPI | GGATC | 2 cut(s) | 286, 1047 |
| BspTNI | GGTCTC | 1 cut(s) | 944 |
| BsrI | ACTGG | 1 cut(s) | 595 |
| BssECI | CCNNGG | 4 cut(s) | 555, 841, 941, 954 |
| BssMI | GATC | 6 cut(s) | 291, 313, 1052, 1064, 1102, 1272 |
| BssSI | CACGAG | 1 cut(s) | 571 |
| BssT1I | CCWWGG | 1 cut(s) | 841 |
| Bst2BI | CACGAG | 1 cut(s) | 571 |
| Bst2UI | CCWGG | 3 cut(s) | 557, 943, 1012 |
| Bst4CI | ACNGT | 2 cut(s) | 370, 1145 |
| Bst6I | CTCTTC | 2 cut(s) | 595, 799 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1005 |
| BstC8I | GCNNGC | 4 cut(s) | 422, 666, 911, 1303 |
| BstDEI | CTNAG | 8 cut(s) | 66, 87, 162, 207, 324, 732, 824, 1043 |
| BstDSI | CCRYGG | 1 cut(s) | 954 |
| BstF5I | GGATG | 2 cut(s) | 97, 712 |
| BstFNI | CGCG | 2 cut(s) | 565, 1305 |
| BstH2I | RGCGCY | 1 cut(s) | 1291 |
| BstHHI | GCGC | 3 cut(s) | 565, 1182, 1290 |
| BstKTI | GATC | 6 cut(s) | 294, 316, 1055, 1067, 1105, 1275 |
| BstMAI | GTCTC | 5 cut(s) | 232, 407, 944, 1151, 1215 |
| BstMBI | GATC | 6 cut(s) | 291, 313, 1052, 1064, 1102, 1272 |
| BstMCI | CGRYCG | 1 cut(s) | 997 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 32, 674, 1005, 1133, 1202, 1302 |
| BstNI | CCWGG | 3 cut(s) | 557, 943, 1012 |
| BstNSI | RCATGY | 1 cut(s) | 668 |
| BstSCI | CCNGG | 4 cut(s) | 430, 555, 941, 1010 |
| BstUI | CGCG | 2 cut(s) | 565, 1305 |
| BstV1I | GCAGC | 3 cut(s) | 19, 892, 1214 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 800 |
| BsuI | GTATCC | 1 cut(s) | 151 |
| BsuRI | GGCC | 3 cut(s) | 846, 893, 936 |
| BtgI | CCRYGG | 1 cut(s) | 954 |
| BtrI | CACGTC | 1 cut(s) | 242 |
| BtsCI | GGATG | 2 cut(s) | 97, 712 |
| BtsI | GCAGTG | 1 cut(s) | 1296 |
| BtsIMutI | CAGTG | 3 cut(s) | 375, 588, 1296 |
| BtuMI | TCGCGA | 1 cut(s) | 1305 |
| Cac8I | GCNNGC | 4 cut(s) | 422, 666, 911, 1303 |
| CaiI | CAGNNNCTG | 1 cut(s) | 26 |
| CciI | TCATGA | 1 cut(s) | 403 |
| CfoI | GCGC | 3 cut(s) | 565, 1182, 1290 |
| Cfr13I | GGNCC | 2 cut(s) | 845, 892 |
| Csp6I | GTAC | 4 cut(s) | 428, 451, 1175, 1240 |
| CviAII | CATG | 3 cut(s) | 404, 484, 665 |
| CviQI | GTAC | 4 cut(s) | 428, 451, 1175, 1240 |
| DdeI | CTNAG | 8 cut(s) | 66, 87, 162, 207, 324, 732, 824, 1043 |
| DpnI | GATC | 6 cut(s) | 293, 315, 1054, 1066, 1104, 1274 |
| DpnII | GATC | 6 cut(s) | 291, 313, 1052, 1064, 1102, 1272 |
| Eam1104I | CTCTTC | 2 cut(s) | 595, 799 |
| EarI | CTCTTC | 2 cut(s) | 595, 799 |
| Ecl136II | GAGCTC | 1 cut(s) | 330 |
| Eco130I | CCWWGG | 1 cut(s) | 841 |
| Eco24I | GRGCYC | 1 cut(s) | 332 |
| Eco31I | GGTCTC | 1 cut(s) | 944 |
| Eco53kI | GAGCTC | 1 cut(s) | 330 |
| Eco88I | CYCGRG | 1 cut(s) | 530 |
| EcoICRI | GAGCTC | 1 cut(s) | 330 |
| EcoRII | CCWGG | 3 cut(s) | 555, 941, 1010 |
| EcoT14I | CCWWGG | 1 cut(s) | 841 |
| EcoT22I | ATGCAT | 2 cut(s) | 670, 781 |
| EcoT38I | GRGCYC | 1 cut(s) | 332 |
| ErhI | CCWWGG | 1 cut(s) | 841 |
| Esp3I | CGTCTC | 1 cut(s) | 232 |
| FaeI | CATG | 3 cut(s) | 407, 487, 668 |
| FaqI | GGGAC | 1 cut(s) | 368 |
| FatI | CATG | 3 cut(s) | 403, 483, 664 |
| FauI | CCCGC | 2 cut(s) | 64, 918 |
| FbaI | TGATCA | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 8 cut(s) | 33, 881, 907, 971, 1203, 1206, 1291, 1294 |
| FokI | GGATG | 2 cut(s) | 104, 719 |
| FriOI | GRGCYC | 1 cut(s) | 332 |
| Fsp4HI | GCNGC | 8 cut(s) | 33, 881, 907, 971, 1203, 1206, 1291, 1294 |
| FspBI | CTAG | 1 cut(s) | 1312 |
| GlaI | GCGC | 3 cut(s) | 564, 1181, 1289 |
| GluI | GCNGC | 8 cut(s) | 33, 881, 907, 971, 1203, 1206, 1291, 1294 |
| GsaI | CCCAGC | 1 cut(s) | 880 |
| GsuI | CTGGAG | 2 cut(s) | 62, 1176 |
| HaeII | RGCGCY | 1 cut(s) | 1291 |
| HaeIII | GGCC | 3 cut(s) | 846, 893, 936 |
| HapII | CCGG | 1 cut(s) | 432 |
| HhaI | GCGC | 3 cut(s) | 565, 1182, 1290 |
| Hin1II | CATG | 3 cut(s) | 407, 487, 668 |
| Hin6I | GCGC | 3 cut(s) | 563, 1180, 1288 |
| HinP1I | GCGC | 3 cut(s) | 563, 1180, 1288 |
| HinfI | GANTC | 8 cut(s) | 11, 209, 245, 257, 276, 574, 682, 886 |
| HpaII | CCGG | 1 cut(s) | 432 |
| HphI | GGTGA | 2 cut(s) | 121, 204 |
| Hpy166II | GTNNAC | 1 cut(s) | 991 |
| Hpy188I | TCNGA | 8 cut(s) | 10, 163, 208, 262, 327, 526, 1084, 1277 |
| Hpy188III | TCNNGA | 7 cut(s) | 41, 404, 532, 623, 826, 1100, 1304 |
| Hpy8I | GTNNAC | 1 cut(s) | 991 |
| Hpy99I | CGWCG | 2 cut(s) | 1053, 1220 |
| HpyAV | CCTTC | 3 cut(s) | 803, 823, 905 |
| HpyCH4III | ACNGT | 2 cut(s) | 370, 1145 |
| HpyCH4IV | ACGT | 2 cut(s) | 241, 628 |
| HpyCH4V | TGCA | 8 cut(s) | 472, 668, 713, 779, 1008, 1155, 1249, 1270 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 32, 674, 1005, 1133, 1202, 1302 |
| HpyF3I | CTNAG | 8 cut(s) | 66, 87, 162, 207, 324, 732, 824, 1043 |
| HpySE526I | ACGT | 2 cut(s) | 241, 628 |
| Hsp92II | CATG | 3 cut(s) | 407, 487, 668 |
| HspAI | GCGC | 3 cut(s) | 563, 1180, 1288 |
| Ksp22I | TGATCA | 1 cut(s) | 313 |
| Kzo9I | GATC | 6 cut(s) | 291, 313, 1052, 1064, 1102, 1272 |
| LmnI | GCTCC | 1 cut(s) | 1277 |
| Lsp1109I | GCAGC | 3 cut(s) | 19, 892, 1214 |
| LweI | GCATC | 4 cut(s) | 13, 388, 700, 826 |
| MaeI | CTAG | 1 cut(s) | 1312 |
| MaeII | ACGT | 2 cut(s) | 241, 628 |
| MaeIII | GTNAC | 5 cut(s) | 190, 210, 334, 477, 604 |
| MalI | GATC | 6 cut(s) | 293, 315, 1054, 1066, 1104, 1274 |
| MboI | GATC | 6 cut(s) | 291, 313, 1052, 1064, 1102, 1272 |
| MboII | GAAGA | 7 cut(s) | 130, 146, 195, 612, 626, 816, 1013 |
| MhlI | GDGCHC | 2 cut(s) | 20, 332 |
| MluCI | AATT | 4 cut(s) | 55, 319, 491, 796 |
| MlyI | GAGTC | 6 cut(s) | 20, 218, 251, 583, 691, 880 |
| MmeI | TCCRAC | 1 cut(s) | 1107 |
| Mph1103I | ATGCAT | 2 cut(s) | 670, 781 |
| MroXI | GAANNNNTTC | 1 cut(s) | 618 |
| MseI | TTAA | 2 cut(s) | 344, 389 |
| MslI | CAYNNNNRTG | 1 cut(s) | 798 |
| MspI | CCGG | 1 cut(s) | 432 |
| MspR9I | CCNGG | 4 cut(s) | 432, 557, 943, 1012 |
| MvaI | CCWGG | 3 cut(s) | 557, 943, 1012 |
| MvnI | CGCG | 2 cut(s) | 565, 1305 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 32, 674, 1005, 1133, 1202, 1302 |
| NciI | CCSGG | 1 cut(s) | 432 |
| NdeII | GATC | 6 cut(s) | 291, 313, 1052, 1064, 1102, 1272 |
| NlaIII | CATG | 3 cut(s) | 407, 487, 668 |
| NlaIV | GGNNCC | 2 cut(s) | 168, 1279 |
| NmuCI | GTSAC | 2 cut(s) | 210, 477 |
| NruI | TCGCGA | 1 cut(s) | 1305 |
| NsiI | ATGCAT | 2 cut(s) | 670, 781 |
| NspI | RCATGY | 1 cut(s) | 668 |
| PaeI | GCATGC | 1 cut(s) | 668 |
| PaeR7I | CTCGAG | 1 cut(s) | 530 |
| PagI | TCATGA | 1 cut(s) | 403 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1146 |
| PdmI | GAANNNNTTC | 1 cut(s) | 618 |
| PfeI | GAWTC | 2 cut(s) | 245, 276 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 176 |
| PkrI | GCNGC | 8 cut(s) | 34, 882, 908, 972, 1204, 1207, 1292, 1295 |
| PleI | GAGTC | 6 cut(s) | 19, 217, 251, 582, 690, 880 |
| PpsI | GAGTC | 6 cut(s) | 19, 217, 251, 582, 690, 880 |
| Psp124BI | GAGCTC | 1 cut(s) | 332 |
| Psp6I | CCWGG | 3 cut(s) | 555, 941, 1010 |
| PspFI | CCCAGC | 1 cut(s) | 876 |
| PspGI | CCWGG | 3 cut(s) | 555, 941, 1010 |
| PspN4I | GGNNCC | 2 cut(s) | 168, 1279 |
| PspPI | GGNCC | 2 cut(s) | 845, 892 |
| PstNI | CAGNNNCTG | 1 cut(s) | 26 |
| RruI | TCGCGA | 1 cut(s) | 1305 |
| RsaI | GTAC | 4 cut(s) | 429, 452, 1176, 1241 |
| RsaNI | GTAC | 4 cut(s) | 428, 451, 1175, 1240 |
| RseI | CAYNNNNRTG | 1 cut(s) | 798 |
| SacI | GAGCTC | 1 cut(s) | 332 |
| SaqAI | TTAA | 2 cut(s) | 344, 389 |
| SatI | GCNGC | 8 cut(s) | 33, 881, 907, 971, 1203, 1206, 1291, 1294 |
| Sau3AI | GATC | 6 cut(s) | 291, 313, 1052, 1064, 1102, 1272 |
| Sau96I | GGNCC | 2 cut(s) | 845, 892 |
| SchI | GAGTC | 6 cut(s) | 20, 218, 251, 583, 691, 880 |
| ScrFI | CCNGG | 4 cut(s) | 432, 557, 943, 1012 |
| SduI | GDGCHC | 2 cut(s) | 20, 332 |
| SfaNI | GCATC | 4 cut(s) | 13, 388, 700, 826 |
| Sfr274I | CTCGAG | 1 cut(s) | 530 |
| SlaI | CTCGAG | 1 cut(s) | 530 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 798 |
| SmlI | CTYRAG | 1 cut(s) | 530 |
| SmoI | CTYRAG | 1 cut(s) | 530 |
| SphI | GCATGC | 1 cut(s) | 668 |
| Sse9I | AATT | 4 cut(s) | 55, 319, 491, 796 |
| SspI | AATATT | 1 cut(s) | 364 |
| SspMI | CTAG | 1 cut(s) | 1312 |
| SstI | GAGCTC | 1 cut(s) | 332 |
| StyD4I | CCNGG | 4 cut(s) | 430, 555, 941, 1010 |
| StyI | CCWWGG | 1 cut(s) | 841 |
| TaaI | ACNGT | 2 cut(s) | 370, 1145 |
| TaiI | ACGT | 2 cut(s) | 244, 631 |
| TaqI | TCGA | 3 cut(s) | 14, 447, 531 |
| TasI | AATT | 4 cut(s) | 55, 319, 491, 796 |
| TatI | WGTACW | 1 cut(s) | 1174 |
| TauI | GCSGC | 5 cut(s) | 909, 973, 1208, 1293, 1296 |
| TfiI | GAWTC | 2 cut(s) | 245, 276 |
| Tru1I | TTAA | 2 cut(s) | 344, 389 |
| Tru9I | TTAA | 2 cut(s) | 344, 389 |
| TscAI | CASTG | 3 cut(s) | 375, 595, 1303 |
| TseFI | GTSAC | 2 cut(s) | 210, 477 |
| TseI | GCWGC | 3 cut(s) | 32, 880, 1202 |
| Tsp45I | GTSAC | 2 cut(s) | 210, 477 |
| TspDTI | ATGAA | 4 cut(s) | 17, 48, 175, 640 |
| TspGWI | ACGGA | 1 cut(s) | 1233 |
| TspRI | CASTG | 3 cut(s) | 375, 595, 1303 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 176 |
| XapI | RAATTY | 3 cut(s) | 55, 319, 491 |
| XceI | RCATGY | 1 cut(s) | 668 |
| XhoI | CTCGAG | 1 cut(s) | 530 |
| XmnI | GAANNNNTTC | 1 cut(s) | 618 |
| XspI | CTAG | 1 cut(s) | 1312 |
| Zsp2I | ATGCAT | 2 cut(s) | 670, 781 |