Rmu_sc0002370.1_g000020

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002370.1
Physical Location & Seq
Forward (+)
49817 .. 58784
8968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002370.1_g000020.1.cds

Sequence Viewer

Length: 1314 bp
atgaaatcggagtcgagcacagatgctggtgctgctggtctggagaacaaatcaaattcatcatctcaggcgggtaagagaaaagctgaggatgagattgagcaggaggtgagtttgaagaagcagaggagagaagatgtatccctgtatgatgatgtttctgaggaaccaaaggttggggagttcattgtaacatatccatcttctgagtcaccgatattccacaaatgttcttggagacgtgattctcaaaatgactctgatggtgtgccaagattcccacctcttgtgatccctaaagatgttggtgctgatcaaaattctcagagctcggtaacaggcttaactcctattccactcaatattacagtgggatatgctgtccctttaatagcagatgctcatgagagagagacacgcaagcgagtacccggatatgatgaggtcgagtaccgagatatgatgagagtgcaggggtcactcatggcagaatttggttttacctacaagaaagttgatatttcagaactcgagagtgtaatggacaaactgacccaggttgcgcgttccacgagtcaatctttacccactggtaggggaagagtaacatttgaagaagttccagaacgtgtcggtagccgtagtgtattcattgacaaggggcatgcatatatagctatgagtcagggtgttgggttgaagctggatgatgcactcgcattttggaaagctgagttctcacaaaaggttggtgcggagaggtttgacaaagaatatgcatatagcatacgccacaattatggaagagaaggagaaagaacactcaggaaggcagatgcccaaggcccactacccacaccctacgcccctcacacccagcagccgactctggcccttccaagaagccgcccgccaccgccgtttcagtctggtggcctccccaggcaggagaccacggcaaccatctcgccgcccaccaaagcctgtgtgaacgaccgcacttgttgcaccaggctggttcttcaagcacgaaccacaaacctcagccgacgatccaaacaccgatctcaaacagaaatctccgacctcgctcgtcctcccgatctcctcctcgtcaagcccaatgccaccaaagcaaacgactgtctcgtttgcaaacccacagcaaaatctgtactgcgcctctttcctccagccaaagcagccgctacccacgacggagacaaaaccttgtcctcgtacctcttgcaacgccgaaacgctctattgcagatcggagccaacaagcgccgccgcactgctcgcgaaacctag

Protein Analysis

437

Amino Acids

48.49

Weight (kDa)

9.25

Isoelectric Point (pI)

63.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AccII CGCG 2 cut(s) 565, 1305
AclWI GGATC 2 cut(s) 286, 1047
AcsI RAATTY 3 cut(s) 55, 319, 491
AfaI GTAC 4 cut(s) 429, 452, 1176, 1241
AfiI CCNNNNNNNGG 3 cut(s) 176, 594, 946
AflIII ACRYGT 1 cut(s) 628
AgsI TTSAA 4 cut(s) 118, 614, 700, 1025
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 3 cut(s) 555, 941, 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AluBI AGCT 5 cut(s) 86, 330, 677, 703, 731
AluI AGCT 5 cut(s) 86, 330, 677, 703, 731
Alw21I GWGCWC 2 cut(s) 20, 332
Alw26I GTCTC 5 cut(s) 232, 407, 944, 1151, 1215
AlwI GGATC 2 cut(s) 286, 1047
AlwNI CAGNNNCTG 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 3 cut(s) 844, 891, 934
ApeKI GCWGC 3 cut(s) 32, 880, 1202
ApoI RAATTY 3 cut(s) 55, 319, 491
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 3 cut(s) 565, 1182, 1290
AspS9I GGNCC 2 cut(s) 845, 892
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 121, 204
AvaI CYCGRG 1 cut(s) 530
BanII GRGCYC 1 cut(s) 332
BauI CACGAG 1 cut(s) 571
Bbv12I GWGCWC 2 cut(s) 20, 332
BbvCI CCTCAGC 2 cut(s) 87, 1043
BbvI GCAGC 3 cut(s) 19, 892, 1214
BccI CCATC 3 cut(s) 208, 257, 971
BceAI ACGGC 3 cut(s) 624, 904, 972
BcgI CGANNNNNNTGC 2 cut(s) 948, 982
BciT130I CCWGG 3 cut(s) 557, 943, 1012
BciVI GTATCC 1 cut(s) 151
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 1 cut(s) 432
BcoDI GTCTC 5 cut(s) 232, 407, 944, 1151, 1215
BfaI CTAG 1 cut(s) 1312
BfoI RGCGCY 1 cut(s) 1291
BfuI GTATCC 1 cut(s) 151
BisI GCNGC 8 cut(s) 33, 881, 907, 971, 1203, 1206, 1291, 1294
BlsI GCNGC 8 cut(s) 34, 882, 908, 972, 1204, 1207, 1292, 1295
Bme1390I CCNGG 4 cut(s) 432, 557, 943, 1012
BmeT110I CYCGRG 1 cut(s) 530
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 845, 892
BmiI GGNNCC 2 cut(s) 168, 1279
BmrFI CCNGG 4 cut(s) 432, 557, 943, 1012
BmsI GCATC 4 cut(s) 13, 388, 700, 826
BpmI CTGGAG 2 cut(s) 62, 1176
Bpu10I CCTNAGC 2 cut(s) 87, 1043
BpuMI CCSGG 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 944
BsaJI CCNNGG 4 cut(s) 555, 841, 941, 954
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 594, 946
Bse1I ACTGG 1 cut(s) 595
BseBI CCWGG 3 cut(s) 557, 943, 1012
BseDI CCNNGG 4 cut(s) 555, 841, 941, 954
BseGI GGATG 2 cut(s) 97, 712
BseLI CCNNNNNNNGG 3 cut(s) 176, 594, 946
BseMII CTCAG 8 cut(s) 78, 80, 153, 198, 338, 723, 838, 1057
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 3 cut(s) 142, 1097, 1100
BseXI GCAGC 3 cut(s) 19, 892, 1214
BseYI CCCAGC 1 cut(s) 876
BsgI GTGCAG 1 cut(s) 491
Bsh1236I CGCG 2 cut(s) 565, 1305
Bsh1285I CGRYCG 1 cut(s) 997
BshFI GGCC 3 cut(s) 846, 893, 936
BsiEI CGRYCG 1 cut(s) 997
BsiHKAI GWGCWC 2 cut(s) 20, 332
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 3 cut(s) 176, 594, 946
BsmAI GTCTC 5 cut(s) 232, 407, 944, 1151, 1215
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 3 cut(s) 846, 893, 936
Bso31I GGTCTC 1 cut(s) 944
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 20, 332
Bsp143I GATC 6 cut(s) 291, 313, 1052, 1064, 1102, 1272
Bsp68I TCGCGA 1 cut(s) 1305
BspANI GGCC 3 cut(s) 846, 893, 936
BspCNI CTCAG 8 cut(s) 79, 79, 154, 199, 337, 724, 837, 1056
BspFNI CGCG 2 cut(s) 565, 1305
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 168, 1279
BspPI GGATC 2 cut(s) 286, 1047
BspTNI GGTCTC 1 cut(s) 944
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 4 cut(s) 555, 841, 941, 954
BssMI GATC 6 cut(s) 291, 313, 1052, 1064, 1102, 1272
BssSI CACGAG 1 cut(s) 571
BssT1I CCWWGG 1 cut(s) 841
Bst2BI CACGAG 1 cut(s) 571
Bst2UI CCWGG 3 cut(s) 557, 943, 1012
Bst4CI ACNGT 2 cut(s) 370, 1145
Bst6I CTCTTC 2 cut(s) 595, 799
BstAPI GCANNNNNTGC 1 cut(s) 1005
BstC8I GCNNGC 4 cut(s) 422, 666, 911, 1303
BstDEI CTNAG 8 cut(s) 66, 87, 162, 207, 324, 732, 824, 1043
BstDSI CCRYGG 1 cut(s) 954
BstF5I GGATG 2 cut(s) 97, 712
BstFNI CGCG 2 cut(s) 565, 1305
BstH2I RGCGCY 1 cut(s) 1291
BstHHI GCGC 3 cut(s) 565, 1182, 1290
BstKTI GATC 6 cut(s) 294, 316, 1055, 1067, 1105, 1275
BstMAI GTCTC 5 cut(s) 232, 407, 944, 1151, 1215
BstMBI GATC 6 cut(s) 291, 313, 1052, 1064, 1102, 1272
BstMCI CGRYCG 1 cut(s) 997
BstMWI GCNNNNNNNGC 6 cut(s) 32, 674, 1005, 1133, 1202, 1302
BstNI CCWGG 3 cut(s) 557, 943, 1012
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 4 cut(s) 430, 555, 941, 1010
BstUI CGCG 2 cut(s) 565, 1305
BstV1I GCAGC 3 cut(s) 19, 892, 1214
BstXI CCANNNNNNTGG 1 cut(s) 800
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 3 cut(s) 846, 893, 936
BtgI CCRYGG 1 cut(s) 954
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 2 cut(s) 97, 712
BtsI GCAGTG 1 cut(s) 1296
BtsIMutI CAGTG 3 cut(s) 375, 588, 1296
BtuMI TCGCGA 1 cut(s) 1305
Cac8I GCNNGC 4 cut(s) 422, 666, 911, 1303
CaiI CAGNNNCTG 1 cut(s) 26
CciI TCATGA 1 cut(s) 403
CfoI GCGC 3 cut(s) 565, 1182, 1290
Cfr13I GGNCC 2 cut(s) 845, 892
Csp6I GTAC 4 cut(s) 428, 451, 1175, 1240
CviAII CATG 3 cut(s) 404, 484, 665
CviQI GTAC 4 cut(s) 428, 451, 1175, 1240
DdeI CTNAG 8 cut(s) 66, 87, 162, 207, 324, 732, 824, 1043
DpnI GATC 6 cut(s) 293, 315, 1054, 1066, 1104, 1274
DpnII GATC 6 cut(s) 291, 313, 1052, 1064, 1102, 1272
Eam1104I CTCTTC 2 cut(s) 595, 799
EarI CTCTTC 2 cut(s) 595, 799
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 841
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 944
Eco53kI GAGCTC 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 330
EcoRII CCWGG 3 cut(s) 555, 941, 1010
EcoT14I CCWWGG 1 cut(s) 841
EcoT22I ATGCAT 2 cut(s) 670, 781
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 841
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 3 cut(s) 407, 487, 668
FaqI GGGAC 1 cut(s) 368
FatI CATG 3 cut(s) 403, 483, 664
FauI CCCGC 2 cut(s) 64, 918
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 8 cut(s) 33, 881, 907, 971, 1203, 1206, 1291, 1294
FokI GGATG 2 cut(s) 104, 719
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 8 cut(s) 33, 881, 907, 971, 1203, 1206, 1291, 1294
FspBI CTAG 1 cut(s) 1312
GlaI GCGC 3 cut(s) 564, 1181, 1289
GluI GCNGC 8 cut(s) 33, 881, 907, 971, 1203, 1206, 1291, 1294
GsaI CCCAGC 1 cut(s) 880
GsuI CTGGAG 2 cut(s) 62, 1176
HaeII RGCGCY 1 cut(s) 1291
HaeIII GGCC 3 cut(s) 846, 893, 936
HapII CCGG 1 cut(s) 432
HhaI GCGC 3 cut(s) 565, 1182, 1290
Hin1II CATG 3 cut(s) 407, 487, 668
Hin6I GCGC 3 cut(s) 563, 1180, 1288
HinP1I GCGC 3 cut(s) 563, 1180, 1288
HinfI GANTC 8 cut(s) 11, 209, 245, 257, 276, 574, 682, 886
HpaII CCGG 1 cut(s) 432
HphI GGTGA 2 cut(s) 121, 204
Hpy166II GTNNAC 1 cut(s) 991
Hpy188I TCNGA 8 cut(s) 10, 163, 208, 262, 327, 526, 1084, 1277
Hpy188III TCNNGA 7 cut(s) 41, 404, 532, 623, 826, 1100, 1304
Hpy8I GTNNAC 1 cut(s) 991
Hpy99I CGWCG 2 cut(s) 1053, 1220
HpyAV CCTTC 3 cut(s) 803, 823, 905
HpyCH4III ACNGT 2 cut(s) 370, 1145
HpyCH4IV ACGT 2 cut(s) 241, 628
HpyCH4V TGCA 8 cut(s) 472, 668, 713, 779, 1008, 1155, 1249, 1270
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 674, 1005, 1133, 1202, 1302
HpyF3I CTNAG 8 cut(s) 66, 87, 162, 207, 324, 732, 824, 1043
HpySE526I ACGT 2 cut(s) 241, 628
Hsp92II CATG 3 cut(s) 407, 487, 668
HspAI GCGC 3 cut(s) 563, 1180, 1288
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 6 cut(s) 291, 313, 1052, 1064, 1102, 1272
LmnI GCTCC 1 cut(s) 1277
Lsp1109I GCAGC 3 cut(s) 19, 892, 1214
LweI GCATC 4 cut(s) 13, 388, 700, 826
MaeI CTAG 1 cut(s) 1312
MaeII ACGT 2 cut(s) 241, 628
MaeIII GTNAC 5 cut(s) 190, 210, 334, 477, 604
MalI GATC 6 cut(s) 293, 315, 1054, 1066, 1104, 1274
MboI GATC 6 cut(s) 291, 313, 1052, 1064, 1102, 1272
MboII GAAGA 7 cut(s) 130, 146, 195, 612, 626, 816, 1013
MhlI GDGCHC 2 cut(s) 20, 332
MluCI AATT 4 cut(s) 55, 319, 491, 796
MlyI GAGTC 6 cut(s) 20, 218, 251, 583, 691, 880
MmeI TCCRAC 1 cut(s) 1107
Mph1103I ATGCAT 2 cut(s) 670, 781
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 2 cut(s) 344, 389
MslI CAYNNNNRTG 1 cut(s) 798
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 4 cut(s) 432, 557, 943, 1012
MvaI CCWGG 3 cut(s) 557, 943, 1012
MvnI CGCG 2 cut(s) 565, 1305
MwoI GCNNNNNNNGC 6 cut(s) 32, 674, 1005, 1133, 1202, 1302
NciI CCSGG 1 cut(s) 432
NdeII GATC 6 cut(s) 291, 313, 1052, 1064, 1102, 1272
NlaIII CATG 3 cut(s) 407, 487, 668
NlaIV GGNNCC 2 cut(s) 168, 1279
NmuCI GTSAC 2 cut(s) 210, 477
NruI TCGCGA 1 cut(s) 1305
NsiI ATGCAT 2 cut(s) 670, 781
NspI RCATGY 1 cut(s) 668
PaeI GCATGC 1 cut(s) 668
PaeR7I CTCGAG 1 cut(s) 530
PagI TCATGA 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 1146
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 2 cut(s) 245, 276
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 8 cut(s) 34, 882, 908, 972, 1204, 1207, 1292, 1295
PleI GAGTC 6 cut(s) 19, 217, 251, 582, 690, 880
PpsI GAGTC 6 cut(s) 19, 217, 251, 582, 690, 880
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 3 cut(s) 555, 941, 1010
PspFI CCCAGC 1 cut(s) 876
PspGI CCWGG 3 cut(s) 555, 941, 1010
PspN4I GGNNCC 2 cut(s) 168, 1279
PspPI GGNCC 2 cut(s) 845, 892
PstNI CAGNNNCTG 1 cut(s) 26
RruI TCGCGA 1 cut(s) 1305
RsaI GTAC 4 cut(s) 429, 452, 1176, 1241
RsaNI GTAC 4 cut(s) 428, 451, 1175, 1240
RseI CAYNNNNRTG 1 cut(s) 798
SacI GAGCTC 1 cut(s) 332
SaqAI TTAA 2 cut(s) 344, 389
SatI GCNGC 8 cut(s) 33, 881, 907, 971, 1203, 1206, 1291, 1294
Sau3AI GATC 6 cut(s) 291, 313, 1052, 1064, 1102, 1272
Sau96I GGNCC 2 cut(s) 845, 892
SchI GAGTC 6 cut(s) 20, 218, 251, 583, 691, 880
ScrFI CCNGG 4 cut(s) 432, 557, 943, 1012
SduI GDGCHC 2 cut(s) 20, 332
SfaNI GCATC 4 cut(s) 13, 388, 700, 826
Sfr274I CTCGAG 1 cut(s) 530
SlaI CTCGAG 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
SphI GCATGC 1 cut(s) 668
Sse9I AATT 4 cut(s) 55, 319, 491, 796
SspI AATATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 1312
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 4 cut(s) 430, 555, 941, 1010
StyI CCWWGG 1 cut(s) 841
TaaI ACNGT 2 cut(s) 370, 1145
TaiI ACGT 2 cut(s) 244, 631
TaqI TCGA 3 cut(s) 14, 447, 531
TasI AATT 4 cut(s) 55, 319, 491, 796
TatI WGTACW 1 cut(s) 1174
TauI GCSGC 5 cut(s) 909, 973, 1208, 1293, 1296
TfiI GAWTC 2 cut(s) 245, 276
Tru1I TTAA 2 cut(s) 344, 389
Tru9I TTAA 2 cut(s) 344, 389
TscAI CASTG 3 cut(s) 375, 595, 1303
TseFI GTSAC 2 cut(s) 210, 477
TseI GCWGC 3 cut(s) 32, 880, 1202
Tsp45I GTSAC 2 cut(s) 210, 477
TspDTI ATGAA 4 cut(s) 17, 48, 175, 640
TspGWI ACGGA 1 cut(s) 1233
TspRI CASTG 3 cut(s) 375, 595, 1303
Van91I CCANNNNNTGG 1 cut(s) 176
XapI RAATTY 3 cut(s) 55, 319, 491
XceI RCATGY 1 cut(s) 668
XhoI CTCGAG 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 1 cut(s) 1312
Zsp2I ATGCAT 2 cut(s) 670, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.