Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015707

Physical Location & Seq

Genomic Coordinates Forward (+)

42492962 .. 42496752

Gene Structure 3791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACGCTGCCCTATTTCGTCACCGTTTTCGCAATGAAAAGCCTGAAGCTCAAGTCACACATGGCAGAATTTGGTTTTGTTTGCCTACAAGAAAGTTGATATTTCAGAACTCGAGAAATTGGACATCAACTATAGTAGAACAAGAGAAAAATCGGTTGACTCCTATAGTAGAAACCCTATCCACAAGCTACCTGGGTCCGGACTATTCGCAGGCAGTTCATTACCTTCCAAAAGAATTTGCTGAGATACCCTTAAGAGACATTGATGACATAGCTAAGAACTCGTTTCCTATGTGCATGCGCCAGGTAGTTGAAAAGCTGAGAGAGGAGCATCATCCAAAGCATGGAGGGAGAATGCAACTGGGTCTCTTTCAAGAGATGATGATGTGTGAAACTGGTGTTGGGTTGAAGTTGAATGATGCACTTGCATTTGGAAAGCTGAGTTCTCACGAAAGGTTTGACAAAGAATATGCATATAGCATACGCCACAAATCCACAATTATGGAAGAGAAGAAGAAAGAACGGATTACATGCCTTATTCCTGTTAAAAGATCATCTCATCTACTCCTGGTGTTGAAGATCATCATGGATGCCCATATCAACATTTCAGGTAATTTCTATGACAAAATCTATCACTTTTCGGGATGCTGTTTAAAAAGGCTAAAACAGATGATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_lrg

Protein Analysis

226

Amino Acids

26.53

Weight (kDa)

9.27

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_lrg	PF04104	90 - 168	8.4e-18	Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015707)

Species	Orthologous Gene IDs
malus_domestica	MD16G1122100.v1.1
pyrus_communis	pycom16g10460
rosa_chinensis	RchiOBHm_Chr4g0417231 RchiOBHm_Chr4g0417241 RchiOBHm_Chr4g0417251 RchiOBHm_Chr4g0417261
rosa_laevigata	RLG00000007921
rosa_multiflora	Rmu_sc0000646.1_g000011 Rmu_sc0002370.1_g000020
rosa_samantha	Rh4AG209800 Rh4CG220900 Rh4DG207500 Rh4DG207600 Rh4DG207700
rosa_wichuraiana	Rw4G017730 Rw4G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	199
AcsI	RAATTY	2 cut(s)	69, 236
AcuI	CTGAAG	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	199, 344
AflII	CTTAAG	1 cut(s)	253
AgsI	TTSAA	5 cut(s)	314, 374, 409, 415, 577
AjnI	CCWGG	3 cut(s)	192, 303, 567
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	5 cut(s)	50, 189, 275, 319, 439
AluI	AGCT	5 cut(s)	50, 189, 275, 319, 439
Alw26I	GTCTC	2 cut(s)	252, 371
Ama87I	CYCGRG	1 cut(s)	112
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	69, 236
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	197
BciT130I	CCWGG	3 cut(s)	194, 305, 569
BcoDI	GTCTC	2 cut(s)	252, 371
BfmI	CTRYAG	2 cut(s)	132, 165
BfrI	CTTAAG	1 cut(s)	253
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	3 cut(s)	194, 305, 569
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	3 cut(s)	194, 305, 569
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	4 cut(s)	340, 409, 580, 635
BmuI	ACTGGG	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 344
Bse1I	ACTGG	2 cut(s)	366, 400
Bse3DI	GCAATG	1 cut(s)	40
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	3 cut(s)	194, 305, 569
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	3 cut(s)	334, 595, 650
BseLI	CCNNNNNNNGG	2 cut(s)	199, 344
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	234, 311, 431
BseNI	ACTGG	2 cut(s)	366, 400
BseRI	GAGGAG	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	199, 344
BsmAI	GTCTC	2 cut(s)	252, 371
BsmI	GAATGC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	112
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	551, 579
BspCNI	CTCAG	3 cut(s)	235, 312, 432
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	366, 400
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	551, 579
Bst2UI	CCWGG	3 cut(s)	194, 305, 569
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	501
BstAFI	CTTAAG	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	213, 299
BstDEI	CTNAG	4 cut(s)	243, 276, 320, 440
BstF5I	GGATG	3 cut(s)	334, 595, 650
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	554, 582
BstMAI	GTCTC	2 cut(s)	252, 371
BstMBI	GATC	2 cut(s)	551, 579
BstNI	CCWGG	3 cut(s)	194, 305, 569
BstNSI	RCATGY	2 cut(s)	301, 534
BstSCI	CCNGG	3 cut(s)	192, 303, 567
BstSFI	CTRYAG	2 cut(s)	132, 165
BstXI	CCANNNNNNTGG	1 cut(s)	502
BtsCI	GGATG	3 cut(s)	334, 595, 650
Cac8I	GCNNGC	2 cut(s)	213, 299
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	1 cut(s)	14
CviAII	CATG	5 cut(s)	62, 298, 344, 531, 586
CviJI	RGCY	7 cut(s)	43, 50, 189, 275, 319, 439, 661
CviKI_1	RGCY	7 cut(s)	43, 50, 189, 275, 319, 439, 661
DdeI	CTNAG	4 cut(s)	243, 276, 320, 440
DpnI	GATC	2 cut(s)	553, 581
DpnII	GATC	2 cut(s)	551, 579
DraI	TTTAAA	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	3 cut(s)	192, 303, 567
EcoT22I	ATGCAT	1 cut(s)	475
FaeI	CATG	5 cut(s)	65, 301, 347, 534, 589
FatI	CATG	5 cut(s)	61, 297, 343, 530, 585
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	321, 602, 657
Fsp4HI	GCNGC	1 cut(s)	9
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	9
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	5 cut(s)	65, 301, 347, 534, 589
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	5 cut(s)	114, 200, 374, 449, 642
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	297, 358, 422, 428, 473
HpyF3I	CTNAG	4 cut(s)	243, 276, 320, 440
Hsp92II	CATG	5 cut(s)	65, 301, 347, 534, 589
HspAI	GCGC	1 cut(s)	301
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	551, 579
LmnI	GCTCC	1 cut(s)	328
LweI	GCATC	4 cut(s)	340, 409, 580, 635
MaeIII	GTNAC	2 cut(s)	20, 55
MalI	GATC	2 cut(s)	553, 581
MboI	GATC	2 cut(s)	551, 579
MboII	GAAGA	4 cut(s)	518, 523, 526, 589
MluCI	AATT	5 cut(s)	69, 118, 236, 498, 613
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	319, 341
Mph1103I	ATGCAT	1 cut(s)	475
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	3 cut(s)	254, 546, 653
MslI	CAYNNNNRTG	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	253
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	3 cut(s)	194, 305, 569
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	3 cut(s)	194, 305, 569
NdeII	GATC	2 cut(s)	551, 579
NlaIII	CATG	5 cut(s)	65, 301, 347, 534, 589
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	2 cut(s)	20, 55
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	2 cut(s)	301, 534
PaeI	GCATGC	1 cut(s)	301
PaeR7I	CTCGAG	1 cut(s)	112
PctI	GAATGC	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	3 cut(s)	192, 303, 567
PspGI	CCWGG	3 cut(s)	192, 303, 567
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	3 cut(s)	254, 546, 653
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	551, 579
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	3 cut(s)	194, 305, 569
SfaNI	GCATC	4 cut(s)	340, 409, 580, 635
SfcI	CTRYAG	2 cut(s)	132, 165
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	3 cut(s)	51, 112, 253
SmoI	CTYRAG	3 cut(s)	51, 112, 253
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	5 cut(s)	69, 118, 236, 498, 613
StyD4I	CCNGG	3 cut(s)	192, 303, 567
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	113
TasI	AATT	5 cut(s)	69, 118, 236, 498, 613
Tru1I	TTAA	3 cut(s)	254, 546, 653
Tru9I	TTAA	3 cut(s)	254, 546, 653
TseFI	GTSAC	2 cut(s)	20, 55
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	2 cut(s)	20, 55
TspDTI	ATGAA	2 cut(s)	51, 209
TspGWI	ACGGA	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	344
Vha464I	CTTAAG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	69, 236
XceI	RCATGY	2 cut(s)	301, 534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.