RchiOBHm_Chr4g0417251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015707
Physical Location & Seq
Forward (+)
42507777 .. 42509950
2174 bp
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UTR
Exon/CDS
Intron
PRQ38734

Sequence Viewer

Length: 474 bp
ATGAAATCGGAGTCAAGCACGGATGCTGGTGCTGCTGGTCTGGAGAACAAATCAAGTTCATCATCTCAGGCGGATGAGATTGAGCAGGAGGTGAGTTTGGAGAAGCAGAGGAGAGAAGAGGTATCTCTGTATGATGATGTTTCCGAGGAACCAAAGGTTGGGGAGTTCATTGTAAAGTATCCCTCTTCTGAGTCACCGATATTCCACAAATGTTCTTGGAGACGTGATTCTCGAAATGACTCTGATGGTGTGCCAAGATTCCCACCTCTTGTGATCCCTAAAGATGCTGGAGCTGATCGAAATCCTCTGCACTCGGTAACTGGCTTACCTCCAGTTCCACTCAATATTATAGTGGGATATGCTGTGCCTTTAATAGCAGATGCTCACGAGAGAGAGACACGCAAGCGAGAACCGGGATATGATGAGGTCGAGTACCGAAATATGATGAGGTCGTTTCTGATGAGTGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.61

Weight (kDa)

4.84

Isoelectric Point (pI)

75.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 268
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 1 cut(s) 158
AjiI CACGTC 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 2 cut(s) 214, 389
AlwI GGATC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 2 cut(s) 103, 186
BauI CACGAG 1 cut(s) 386
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 239
BciVI GTATCC 1 cut(s) 189
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 214, 389
BfuI GTATCC 1 cut(s) 189
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 414
BmgBI CACGTC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 13, 274, 370
BpmI CTGGAG 3 cut(s) 62, 309, 315
BpuMI CCSGG 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 325, 332
Bse8I GATNNNNATC 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 28, 79
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 80, 180
BseNI ACTGG 2 cut(s) 325, 332
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 293
BsiSI CCGG 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 214, 389
BsmBI CGTCTC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 273, 295
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 79, 181
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 268
BsrI ACTGG 2 cut(s) 325, 332
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 2 cut(s) 273, 295
BssSI CACGAG 1 cut(s) 386
Bst2BI CACGAG 1 cut(s) 386
Bst6I CTCTTC 2 cut(s) 111, 190
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 2 cut(s) 66, 189
BstF5I GGATG 2 cut(s) 28, 79
BstKTI GATC 2 cut(s) 276, 298
BstMAI GTCTC 2 cut(s) 214, 389
BstMBI GATC 2 cut(s) 273, 295
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 19
BsuI GTATCC 1 cut(s) 189
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 28, 79
Cac8I GCNNGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 433
CviJI RGCY 2 cut(s) 293, 324
CviKI_1 RGCY 2 cut(s) 293, 324
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 66, 189
DpnI GATC 2 cut(s) 275, 297
DpnII GATC 2 cut(s) 273, 295
Eam1104I CTCTTC 2 cut(s) 111, 190
EarI CTCTTC 2 cut(s) 111, 190
EciI GGCGGA 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 214
FaiI YATR 5 cut(s) 132, 350, 360, 420, 443
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 35, 86
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 3 cut(s) 62, 309, 315
HapII CCGG 1 cut(s) 413
HinfI GANTC 5 cut(s) 11, 191, 227, 239, 258
HpaII CCGG 1 cut(s) 413
HphI GGTGA 2 cut(s) 103, 186
Hpy188I TCNGA 5 cut(s) 10, 145, 190, 244, 459
Hpy188III TCNNGA 3 cut(s) 41, 231, 386
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 66, 189
HpySE526I ACGT 1 cut(s) 223
Kzo9I GATC 2 cut(s) 273, 295
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 9 cut(s) 12, 21, 26, 53, 71, 273, 306, 345, 426
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 3 cut(s) 13, 274, 370
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 192, 316
MalI GATC 2 cut(s) 275, 297
MboI GATC 2 cut(s) 273, 295
MboII GAAGA 2 cut(s) 128, 177
MlyI GAGTC 3 cut(s) 20, 200, 233
MseI TTAA 1 cut(s) 371
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 414
NdeII GATC 2 cut(s) 273, 295
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 2 cut(s) 227, 258
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 3 cut(s) 19, 199, 233
PpsI GAGTC 3 cut(s) 19, 199, 233
PspN4I GGNNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 273, 295
SchI GAGTC 3 cut(s) 20, 200, 233
ScrFI CCNGG 1 cut(s) 414
SetI ASST 9 cut(s) 93, 123, 159, 226, 268, 295, 331, 429, 452
SfaNI GCATC 3 cut(s) 13, 274, 370
SsiI CCGC 1 cut(s) 71
SspI AATATT 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 412
TaiI ACGT 1 cut(s) 226
TaqI TCGA 3 cut(s) 232, 298, 429
TfiI GAWTC 2 cut(s) 227, 258
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 3 cut(s) 17, 48, 157
TspGWI ACGGA 1 cut(s) 35
Van91I CCANNNNNTGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.