Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000646.1

Orthogroup ID

OG0015707

Physical Location & Seq

Genomic Coordinates Reverse (-)

46662 .. 50551

Gene Structure 3890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000646.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgaaaagcctgaagctcaaaggtcacacatggcagaatttggttttgtttgcctacaagaaagttgatatttcagaactcgagagtgtaatggacaaactgacccaggttgcgcgttccacgagtcaatctttacccactggtaggggaagagtgtctgtaccatttgaagaagttccagaacttgtcggtagccgtagagtattcatcgccaaggggcatgcatatatagctatgagtcaggttaaaccaaaagaatttgctgagatacccttaagagacattgatgacatagctaagaactcgtttcctatgtgcatgcggcagctagttgaaaagggtgttgggttgaagttggatgatgcacttgcatttggaaagctgagttctcacgaaagaccttgcagagctctatatgtggtgccaggtgttatggtcaccatcaaatatgtttcttttggatattacaggattacatgccttattcctgttaaaagatcatctcatctactcctggtgttgaagatcatcatggatgcccatatcaacatttcagcaaataaacagagttatttgttggatttcgcagtgtcagattgctgcaaagaccatctaacatctcagttctggtatagtgccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_lrg

Protein Analysis

214

Amino Acids

24.16

Weight (kDa)

9.4

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015707)

Species	Orthologous Gene IDs
malus_domestica	MD16G1122100.v1.1
pyrus_communis	pycom16g10460
rosa_chinensis	RchiOBHm_Chr4g0417231 RchiOBHm_Chr4g0417241 RchiOBHm_Chr4g0417251 RchiOBHm_Chr4g0417261
rosa_laevigata	RLG00000007921
rosa_multiflora	Rmu_sc0000646.1_g000011 Rmu_sc0002370.1_g000020
rosa_samantha	Rh4AG209800 Rh4CG220900 Rh4DG207500 Rh4DG207600 Rh4DG207700
rosa_wichuraiana	Rw4G017730 Rw4G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccII	CGCG	1 cut(s)	115
AciI	CCGC	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	37, 257
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	274
AgsI	TTSAA	4 cut(s)	170, 335, 352, 523
AjnI	CCWGG	3 cut(s)	105, 424, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	6 cut(s)	16, 233, 296, 328, 382, 410
AluI	AGCT	6 cut(s)	16, 233, 296, 328, 382, 410
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	325, 600
ApoI	RAATTY	2 cut(s)	37, 257
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	337, 587
BccI	CCATC	2 cut(s)	449, 618
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	3 cut(s)	107, 426, 515
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	274
BisI	GCNGC	3 cut(s)	323, 326, 601
BlsI	GCNGC	3 cut(s)	324, 327, 602
Bme1390I	CCNGG	3 cut(s)	107, 426, 515
BmeT110I	CYCGRG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	3 cut(s)	107, 426, 515
BmsI	GCATC	2 cut(s)	352, 526
BsaJI	CCNNGG	2 cut(s)	105, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	3 cut(s)	107, 426, 515
BseDI	CCNNGG	2 cut(s)	105, 213
BseGI	GGATG	2 cut(s)	364, 541
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	255, 374, 635
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	2 cut(s)	337, 587
Bsh1236I	CGCG	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	497, 525
BspACI	CCGC	1 cut(s)	322
BspCNI	CTCAG	3 cut(s)	256, 375, 634
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	421
BspTI	CTTAAG	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	105, 213
BssMI	GATC	2 cut(s)	497, 525
BssSI	CACGAG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	3 cut(s)	107, 426, 515
Bst6I	CTCTTC	1 cut(s)	145
BstAFI	CTTAAG	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	222, 320
BstDEI	CTNAG	4 cut(s)	264, 297, 383, 621
BstEII	GGTNACC	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	364, 541
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	2 cut(s)	500, 528
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	497, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	3 cut(s)	107, 426, 515
BstNSI	RCATGY	3 cut(s)	224, 322, 480
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	105, 424, 513
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	337, 587
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	364, 541
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	2 cut(s)	138, 594
Cac8I	GCNNGC	2 cut(s)	222, 320
CfoI	GCGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	5 cut(s)	30, 221, 319, 477, 532
CviJI	RGCY	8 cut(s)	9, 16, 195, 233, 296, 328, 382, 410
CviKI_1	RGCY	8 cut(s)	9, 16, 195, 233, 296, 328, 382, 410
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	4 cut(s)	264, 297, 383, 621
DpnI	GATC	2 cut(s)	499, 527
DpnII	GATC	2 cut(s)	497, 525
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	3 cut(s)	105, 424, 513
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	5 cut(s)	33, 224, 322, 480, 535
FatI	CATG	5 cut(s)	29, 220, 318, 476, 531
Fnu4HI	GCNGC	3 cut(s)	323, 326, 601
FokI	GGATG	2 cut(s)	371, 548
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	3 cut(s)	323, 326, 601
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	3 cut(s)	323, 326, 601
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	5 cut(s)	33, 224, 322, 480, 535
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	2 cut(s)	124, 238
HphI	GGTGA	1 cut(s)	430
Hpy188I	TCNGA	2 cut(s)	76, 595
Hpy188III	TCNNGA	3 cut(s)	82, 179, 392
HpyCH4V	TGCA	6 cut(s)	224, 318, 365, 371, 405, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	4 cut(s)	264, 297, 383, 621
Hsp92II	CATG	5 cut(s)	33, 224, 322, 480, 535
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	497, 525
Lsp1109I	GCAGC	2 cut(s)	337, 587
LweI	GCATC	2 cut(s)	352, 526
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	23, 436
MalI	GATC	2 cut(s)	499, 527
MboI	GATC	2 cut(s)	497, 525
MboII	GAAGA	3 cut(s)	162, 182, 535
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	2 cut(s)	37, 257
MlyI	GAGTC	2 cut(s)	133, 247
MmeI	TCCRAC	2 cut(s)	336, 558
Mph1103I	ATGCAT	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	3 cut(s)	246, 275, 492
MspCI	CTTAAG	1 cut(s)	274
MspR9I	CCNGG	3 cut(s)	107, 426, 515
MvaI	CCWGG	3 cut(s)	107, 426, 515
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	2 cut(s)	497, 525
NlaIII	CATG	5 cut(s)	33, 224, 322, 480, 535
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	23, 436
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	3 cut(s)	224, 322, 480
PaeI	GCATGC	2 cut(s)	224, 322
PaeR7I	CTCGAG	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	324, 327, 602
PleI	GAGTC	2 cut(s)	132, 246
PpsI	GAGTC	2 cut(s)	132, 246
Psp124BI	GAGCTC	1 cut(s)	412
Psp6I	CCWGG	3 cut(s)	105, 424, 513
PspEI	GGTNACC	1 cut(s)	436
PspGI	CCWGG	3 cut(s)	105, 424, 513
PspN4I	GGNNCC	1 cut(s)	423
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	246, 275, 492
SatI	GCNGC	3 cut(s)	323, 326, 601
Sau3AI	GATC	2 cut(s)	497, 525
SchI	GAGTC	2 cut(s)	133, 247
ScrFI	CCNGG	3 cut(s)	107, 426, 515
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	2 cut(s)	352, 526
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	80, 274
SmoI	CTYRAG	2 cut(s)	80, 274
SphI	GCATGC	2 cut(s)	224, 322
Sse9I	AATT	2 cut(s)	37, 257
SsiI	CCGC	1 cut(s)	322
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	412
StyD4I	CCNGG	3 cut(s)	105, 424, 513
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	37, 257
TauI	GCSGC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	246, 275, 492
Tru9I	TTAA	3 cut(s)	246, 275, 492
TscAI	CASTG	2 cut(s)	145, 594
TseFI	GTSAC	2 cut(s)	23, 436
TseI	GCWGC	2 cut(s)	325, 600
Tsp45I	GTSAC	2 cut(s)	23, 436
TspDTI	ATGAA	2 cut(s)	17, 196
TspRI	CASTG	2 cut(s)	145, 594
Vha464I	CTTAAG	1 cut(s)	274
XapI	RAATTY	2 cut(s)	37, 257
XceI	RCATGY	3 cut(s)	224, 322, 480
XhoI	CTCGAG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.