Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015707

Physical Location & Seq

Genomic Coordinates Reverse (-)

22962524 .. 22966860

Gene Structure 4337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAAAGCCTGAAGCTCAAAGGTCACTCATGGCAGAATTTGGTTTTGTTTGCTTACAAGAAAGTTGATATTTCAGAACTCGAGAGTGTAATGGACAAACTGACCCAGGTTGCGCGTTCCACGAGTCAATCTTTAGCCACTGCTGATGCCATATTTTACAAGGTACCATTTGAAGAAGTTCCAGAACTTGTCTGTAGCCGTAGAGTATTCATCGGCAAGGGGCATGCATATATAGCTATGAGTCAGGTGGTTTCCCTTGTTGCCACACATTTGCGCAGTCATCTGTCAAAAGCACTGATGTTGACTAACAGAAATTGGACATCAACTATAGTAGAACAAGAGAAAAATCGGTTGACACCTATAGTAGAAACCCTATCCACAAGCTACCTGGGTCCGGACTATTCTCAGCCAAAAGAATTTGCTGAGATACCCTTAAGAGACATTGATGACATAGCTAAGAACTTGTTTCCTATGTGCATGCGCCAGCTAGTTGAAAAGCTGAGAGAGGAGCATCATCCAAAGCATGGAGGGAGAATGCAACTGGGTCTCTTTCAAGGTATTTTCCCATACATCCATTATGTCCTGTGTTTAAGTGGTGTTGGGTTGAAGTTGGATGATGCACTTGCATTTGGAAAGCTGAGTTCTCACGAAAGGTTTGACAAAGAATATGCATATAGCATACGCCGCAATTATGGAAGAGAAGAAGAAAGAACGATCATCTCATCTACTCCTGGTGTTGAAGATCATCATGGATGCCCATATCAACATTTTAGTGAAGAGAATCTGACAGCTGCTCTCAGTAGAATGGGAGTTAACAGTCGTGCTCTTGGCGATGTAATGAAAGTTCGGAATAAGCATTATCAGTTGGCATGCACCGTAACGTTTGAAGCTGTCCAGGGGACATCATGCGAAGCTGGGATTAACCATCCAAATCAATACTTCTCTGACTGCCAAATAATTATGAAGTCAATGGTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_lrg

Protein Analysis

327

Amino Acids

37.03

Weight (kDa)

8.1

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_lrg_N	PF26466	18 - 107	2.7e-17	Eukaryotic and archaeal DNA primase, large subunit N-terminal domain
DNA_primase_lrg	PF04104	150 - 314	1.4e-40	Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015707)

Species	Orthologous Gene IDs
malus_domestica	MD16G1122100.v1.1
pyrus_communis	pycom16g10460
rosa_chinensis	RchiOBHm_Chr4g0417231 RchiOBHm_Chr4g0417241 RchiOBHm_Chr4g0417251 RchiOBHm_Chr4g0417261
rosa_laevigata	RLG00000007921
rosa_multiflora	Rmu_sc0000646.1_g000011 Rmu_sc0002370.1_g000020
rosa_samantha	Rh4AG209800 Rh4CG220900 Rh4DG207500 Rh4DG207600 Rh4DG207700
rosa_wichuraiana	Rw4G017730 Rw4G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	275
Acc65I	GGTACC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	163
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	1 cut(s)	685
AclI	AACGTT	1 cut(s)	881
AcsI	RAATTY	2 cut(s)	37, 416
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	2 cut(s)	165, 975
AfiI	CCNNNNNNNGG	2 cut(s)	394, 524
AflII	CTTAAG	1 cut(s)	433
AgsI	TTSAA	6 cut(s)	173, 494, 554, 607, 740, 887
AjnI	CCWGG	4 cut(s)	105, 387, 730, 894
Alw21I	GWGCWC	1 cut(s)	826
Alw26I	GTCTC	2 cut(s)	432, 551
Ama87I	CYCGRG	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	2 cut(s)	37, 416
Asp700I	GAANNNNTTC	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	163
AspLEI	GCGC	3 cut(s)	115, 276, 483
AspS9I	GGNCC	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	163
BauI	CACGAG	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	1 cut(s)	778
BccI	CCATC	1 cut(s)	933
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	4 cut(s)	107, 389, 732, 896
BcoDI	GTCTC	2 cut(s)	432, 551
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	3 cut(s)	193, 327, 360
BfrI	CTTAAG	1 cut(s)	433
BisI	GCNGC	2 cut(s)	685, 792
BlsI	GCNGC	2 cut(s)	686, 793
Bme1390I	CCNGG	4 cut(s)	107, 389, 732, 896
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	165, 393
BmrFI	CCNGG	4 cut(s)	107, 389, 732, 896
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	4 cut(s)	136, 520, 607, 743
BmuI	ACTGGG	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	105, 388, 895
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 524
Bse1I	ACTGG	1 cut(s)	546
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	4 cut(s)	107, 389, 732, 896
BseDI	CCNNGG	3 cut(s)	105, 388, 895
BseGI	GGATG	5 cut(s)	514, 570, 619, 758, 925
BseLI	CCNNNNNNNGG	2 cut(s)	394, 524
BseMII	CTCAG	5 cut(s)	414, 419, 491, 629, 811
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	778
BseYI	CCCAGC	1 cut(s)	914
Bsh1236I	CGCG	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	826
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	2 cut(s)	394, 524
BsmAI	GTCTC	2 cut(s)	432, 551
BsmFI	GGGAC	1 cut(s)	913
BsmI	GAATGC	1 cut(s)	540
Bso31I	GGTCTC	1 cut(s)	551
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	714, 742
BspACI	CCGC	1 cut(s)	685
BspCNI	CTCAG	5 cut(s)	415, 418, 492, 630, 810
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	165, 393
BspT107I	GGYRCC	1 cut(s)	163
BspTI	CTTAAG	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	105, 388, 895
BssMI	GATC	2 cut(s)	714, 742
BssSI	CACGAG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	4 cut(s)	107, 389, 732, 896
Bst4CI	ACNGT	2 cut(s)	818, 877
Bst6I	CTCTTC	2 cut(s)	691, 771
BstAFI	CTTAAG	1 cut(s)	433
BstC8I	GCNNGC	4 cut(s)	225, 479, 485, 871
BstDEI	CTNAG	6 cut(s)	405, 423, 456, 500, 638, 797
BstF5I	GGATG	5 cut(s)	514, 570, 619, 758, 925
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	3 cut(s)	115, 276, 483
BstKTI	GATC	2 cut(s)	717, 745
BstMAI	GTCTC	2 cut(s)	432, 551
BstMBI	GATC	2 cut(s)	714, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 684
BstNI	CCWGG	4 cut(s)	107, 389, 732, 896
BstNSI	RCATGY	3 cut(s)	227, 481, 873
BstSCI	CCNGG	4 cut(s)	105, 387, 730, 894
BstSFI	CTRYAG	3 cut(s)	193, 327, 360
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	778
BtgZI	GCGATG	1 cut(s)	846
BtsCI	GGATG	5 cut(s)	514, 570, 619, 758, 925
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 293
Cac8I	GCNNGC	4 cut(s)	225, 479, 485, 871
CfoI	GCGC	3 cut(s)	115, 276, 483
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	164, 974
CviAII	CATG	7 cut(s)	30, 224, 478, 524, 749, 870, 906
CviQI	GTAC	2 cut(s)	164, 974
DdeI	CTNAG	6 cut(s)	405, 423, 456, 500, 638, 797
DpnI	GATC	2 cut(s)	716, 744
DpnII	GATC	2 cut(s)	714, 742
Eam1104I	CTCTTC	2 cut(s)	691, 771
EarI	CTCTTC	2 cut(s)	691, 771
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	80
EcoRII	CCWGG	4 cut(s)	105, 387, 730, 894
EcoT22I	ATGCAT	2 cut(s)	229, 673
FaeI	CATG	7 cut(s)	33, 227, 481, 527, 752, 873, 909
FaqI	GGGAC	1 cut(s)	913
FatI	CATG	7 cut(s)	29, 223, 477, 523, 748, 869, 905
Fnu4HI	GCNGC	2 cut(s)	685, 792
FokI	GGATG	5 cut(s)	501, 557, 626, 765, 912
Fsp4HI	GCNGC	2 cut(s)	685, 792
FspBI	CTAG	1 cut(s)	488
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	3 cut(s)	114, 275, 482
GluI	GCNGC	2 cut(s)	685, 792
GsaI	CCCAGC	1 cut(s)	918
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	3 cut(s)	115, 276, 483
Hin1II	CATG	7 cut(s)	33, 227, 481, 527, 752, 873, 909
Hin6I	GCGC	3 cut(s)	113, 274, 481
HinP1I	GCGC	3 cut(s)	113, 274, 481
HincII	GTYRAC	3 cut(s)	303, 354, 814
HindII	GTYRAC	3 cut(s)	303, 354, 814
HinfI	GANTC	3 cut(s)	124, 241, 781
HpaI	GTTAAC	1 cut(s)	814
HpaII	CCGG	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	303, 354, 814
Hpy188I	TCNGA	4 cut(s)	76, 786, 849, 946
Hpy188III	TCNNGA	4 cut(s)	82, 182, 395, 647
Hpy8I	GTNNAC	3 cut(s)	303, 354, 814
HpyCH4III	ACNGT	2 cut(s)	818, 877
HpyCH4IV	ACGT	1 cut(s)	881
HpyCH4V	TGCA	7 cut(s)	227, 477, 538, 620, 626, 671, 873
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 684
HpyF3I	CTNAG	6 cut(s)	405, 423, 456, 500, 638, 797
HpySE526I	ACGT	1 cut(s)	881
Hsp92II	CATG	7 cut(s)	33, 227, 481, 527, 752, 873, 909
HspAI	GCGC	3 cut(s)	113, 274, 481
Kpn2I	TCCGGA	1 cut(s)	394
KpnI	GGTACC	1 cut(s)	167
KspAI	GTTAAC	1 cut(s)	814
Kzo9I	GATC	2 cut(s)	714, 742
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	4 cut(s)	136, 520, 607, 743
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	881
MaeIII	GTNAC	2 cut(s)	23, 877
MalI	GATC	2 cut(s)	716, 744
MboI	GATC	2 cut(s)	714, 742
MboII	GAAGA	6 cut(s)	185, 708, 713, 716, 752, 788
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	5 cut(s)	37, 313, 416, 688, 957
MlyI	GAGTC	2 cut(s)	133, 250
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	2 cut(s)	499, 521
Mph1103I	ATGCAT	2 cut(s)	229, 673
MroI	TCCGGA	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	5 cut(s)	434, 590, 813, 921, 979
MslI	CAYNNNNRTG	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	791
MspCI	CTTAAG	1 cut(s)	433
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	4 cut(s)	107, 389, 732, 896
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	4 cut(s)	107, 389, 732, 896
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	233, 684
NdeII	GATC	2 cut(s)	714, 742
NlaIII	CATG	7 cut(s)	33, 227, 481, 527, 752, 873, 909
NlaIV	GGNNCC	2 cut(s)	165, 393
NmuCI	GTSAC	1 cut(s)	23
NsbI	TGCGCA	1 cut(s)	275
NsiI	ATGCAT	2 cut(s)	229, 673
NspI	RCATGY	3 cut(s)	227, 481, 873
PaeI	GCATGC	3 cut(s)	227, 481, 873
PaeR7I	CTCGAG	1 cut(s)	80
PctI	GAATGC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	781
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	686, 793
PleI	GAGTC	2 cut(s)	132, 249
PpsI	GAGTC	2 cut(s)	132, 249
Psp1406I	AACGTT	1 cut(s)	881
Psp6I	CCWGG	4 cut(s)	105, 387, 730, 894
PspFI	CCCAGC	1 cut(s)	914
PspGI	CCWGG	4 cut(s)	105, 387, 730, 894
PspN4I	GGNNCC	2 cut(s)	165, 393
PspPI	GGNCC	1 cut(s)	392
PsrI	GAACNNNNNNTAC	2 cut(s)	828, 860
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	2 cut(s)	165, 975
RsaNI	GTAC	2 cut(s)	164, 974
RseI	CAYNNNNRTG	1 cut(s)	771
SaqAI	TTAA	5 cut(s)	434, 590, 813, 921, 979
SatI	GCNGC	2 cut(s)	685, 792
Sau3AI	GATC	2 cut(s)	714, 742
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	2 cut(s)	133, 250
ScrFI	CCNGG	4 cut(s)	107, 389, 732, 896
SduI	GDGCHC	1 cut(s)	826
SfaNI	GCATC	4 cut(s)	136, 520, 607, 743
SfcI	CTRYAG	3 cut(s)	193, 327, 360
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	2 cut(s)	80, 433
SmoI	CTYRAG	2 cut(s)	80, 433
SphI	GCATGC	3 cut(s)	227, 481, 873
Sse9I	AATT	5 cut(s)	37, 313, 416, 688, 957
SsiI	CCGC	1 cut(s)	685
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	4 cut(s)	105, 387, 730, 894
TaaI	ACNGT	2 cut(s)	818, 877
TaiI	ACGT	1 cut(s)	884
TaqI	TCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	37, 313, 416, 688, 957
TauI	GCSGC	1 cut(s)	687
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	5 cut(s)	434, 590, 813, 921, 979
Tru9I	TTAA	5 cut(s)	434, 590, 813, 921, 979
TscAI	CASTG	2 cut(s)	145, 300
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	4 cut(s)	17, 199, 854, 977
TspRI	CASTG	2 cut(s)	145, 300
Van91I	CCANNNNNTGG	1 cut(s)	524
Vha464I	CTTAAG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	37, 416
XceI	RCATGY	3 cut(s)	227, 481, 873
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	1 cut(s)	488
Zsp2I	ATGCAT	2 cut(s)	229, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.