Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015707

Physical Location & Seq

Genomic Coordinates Forward (+)

42511440 .. 42516875

Gene Structure 5436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGACGCTGCCCTATTTCGTCACCGTTTTAGCAATGAAAAGCCTGAAGCTCAAAGGTCACACACATGGCAGAATTTGGTTTTGTTTGCCTACAAGAAAGTTGATATTTCAGAACTCGAGGAAAGACCTCCCTGGTCTTATGGTCTTCAAATTAAGAACATGTCTCATCTGATGTCTTATTCCCCACCCCTCATGGAGGTACCATTTGAAGAAGTTCCAGAACTTGTCGGTAGCCGTAGTGTATTCATCAGCAAGGGGCATGCATATATAGCTATGAGTCAGATAGTAGAAACCCTATCCACAAGCTACCTGGGTCCGGACTATTTGCAGGCAGTTCATTACCTTGTTTTATCGTGGTCTATTACCCATAGTTCCCAGTTTCCAAAAGAATTTGCTGAGATACCCTTAAGAGACATTGATGACATAGCTAAGAACTCGTTTCCTATGTGCATGCGCCAGGTAGTTGAAAAGCTGAGAGAGGAGCATCATCCAAAGCATGGAGGGAGAACGCAACTGGGTCTCTTTCAAGTGGAAATCCTCTCTGACATGTGTTCAAATTTTGCACATTTGGTCAATTGGGGTGTTGGGTTGAAGTTGGATGATGCACTTGCATTTGGAAAGCTGAGTTCTCACGAAAGGATTACATGCCTTATTCCTGTTAAAAGATCATCTCATCTACTCCTGGTGTTGAAGATCATCATGGATGCCCATATCAACATTTCAGTGTCATATTGCTGCAAAGACCATCTAACATCTCAGTTCTGTGGAGAGAATCTGACAGCTGCTCTTAGTAGAATGGGAGTTAACAGTCGTGCTCTTGGCGATGTAATGAAAGTTCGGAATAAGCATTATCAGTTGGCATGCACCGTAACGTTTGAAGCTGTCCAGGGGACATCATGCGAAGCTGGGATGAACCATCCAAATCAATACTTCTCTGACAGCCAAATAATTATATGGTCAATGGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_lrg

Protein Analysis

323

Amino Acids

36.72

Weight (kDa)

6.59

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_lrg_N	PF26466	3 - 102	2.8e-09	Eukaryotic and archaeal DNA primase, large subunit N-terminal domain
DNA_primase_lrg	PF04104	141 - 311	8.1e-23	Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015707)

Species	Orthologous Gene IDs
malus_domestica	MD16G1122100.v1.1
pyrus_communis	pycom16g10460
rosa_chinensis	RchiOBHm_Chr4g0417231 RchiOBHm_Chr4g0417241 RchiOBHm_Chr4g0417251 RchiOBHm_Chr4g0417261
rosa_laevigata	RLG00000007921
rosa_multiflora	Rmu_sc0000646.1_g000011 Rmu_sc0002370.1_g000020
rosa_samantha	Rh4AG209800 Rh4CG220900 Rh4DG207500 Rh4DG207600 Rh4DG207700
rosa_wichuraiana	Rw4G017730 Rw4G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	316
AclI	AACGTT	1 cut(s)	872
AcsI	RAATTY	3 cut(s)	73, 389, 556
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	3 cut(s)	196, 316, 497
AflII	CTTAAG	1 cut(s)	406
AflIII	ACRYGT	2 cut(s)	159, 546
AgsI	TTSAA	8 cut(s)	149, 209, 467, 527, 555, 592, 691, 878
AjnI	CCWGG	5 cut(s)	131, 309, 456, 681, 885
AluBI	AGCT	9 cut(s)	50, 272, 306, 428, 472, 622, 782, 881, 905
AluI	AGCT	9 cut(s)	50, 272, 306, 428, 472, 622, 782, 881, 905
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	3 cut(s)	168, 405, 524
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	8, 735, 782
ApoI	RAATTY	3 cut(s)	73, 389, 556
Asp700I	GAANNNNTTC	1 cut(s)	213
Asp718I	GGTACC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	817
BbvI	GCAGC	2 cut(s)	722, 769
BccI	CCATC	2 cut(s)	753, 924
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	5 cut(s)	133, 311, 458, 683, 887
BcoDI	GTCTC	3 cut(s)	168, 405, 524
BfrI	CTTAAG	1 cut(s)	406
BisI	GCNGC	3 cut(s)	9, 736, 783
BlsI	GCNGC	3 cut(s)	10, 737, 784
Bme1390I	CCNGG	5 cut(s)	133, 311, 458, 683, 887
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	201, 315
BmrFI	CCNGG	5 cut(s)	133, 311, 458, 683, 887
BmrI	ACTGGG	2 cut(s)	370, 524
BmsI	GCATC	3 cut(s)	493, 592, 694
BmuI	ACTGGG	2 cut(s)	370, 524
BpiI	GAAGAC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	3 cut(s)	131, 310, 886
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 316, 497
Bse1I	ACTGG	2 cut(s)	376, 519
Bse3DI	GCAATG	1 cut(s)	40
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	5 cut(s)	133, 311, 458, 683, 887
BseDI	CCNNGG	3 cut(s)	131, 310, 886
BseGI	GGATG	5 cut(s)	487, 604, 709, 915, 916
BseLI	CCNNNNNNNGG	3 cut(s)	196, 316, 497
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	4 cut(s)	387, 464, 614, 770
BseNI	ACTGG	2 cut(s)	376, 519
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	722, 769
BseYI	CCCAGC	1 cut(s)	905
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	817
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	3 cut(s)	196, 316, 497
BsmAI	GTCTC	3 cut(s)	168, 405, 524
BsmFI	GGGAC	1 cut(s)	904
Bso31I	GGTCTC	1 cut(s)	524
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	665, 693
BspCNI	CTCAG	4 cut(s)	388, 465, 615, 769
BspEI	TCCGGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	201, 315
BspT107I	GGYRCC	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	376, 519
BssECI	CCNNGG	3 cut(s)	131, 310, 886
BssMI	GATC	2 cut(s)	665, 693
Bst2UI	CCWGG	5 cut(s)	133, 311, 458, 683, 887
Bst4CI	ACNGT	3 cut(s)	26, 809, 868
BstAFI	CTTAAG	1 cut(s)	406
BstC8I	GCNNGC	4 cut(s)	261, 330, 452, 862
BstDEI	CTNAG	6 cut(s)	396, 429, 473, 623, 756, 788
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	5 cut(s)	487, 604, 709, 915, 916
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	2 cut(s)	668, 696
BstMAI	GTCTC	3 cut(s)	168, 405, 524
BstMBI	GATC	2 cut(s)	665, 693
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	5 cut(s)	133, 311, 458, 683, 887
BstNSI	RCATGY	6 cut(s)	163, 263, 454, 550, 648, 864
BstSCI	CCNGG	5 cut(s)	131, 309, 456, 681, 885
BstV1I	GCAGC	2 cut(s)	722, 769
BstV2I	GAAGAC	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	837
BtsCI	GGATG	5 cut(s)	487, 604, 709, 915, 916
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	4 cut(s)	261, 330, 452, 862
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	200
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	6 cut(s)	396, 429, 473, 623, 756, 788
DpnI	GATC	2 cut(s)	667, 695
DpnII	GATC	2 cut(s)	665, 693
Eco31I	GGTCTC	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRII	CCWGG	5 cut(s)	131, 309, 456, 681, 885
EcoT22I	ATGCAT	1 cut(s)	265
FaqI	GGGAC	1 cut(s)	904
Fnu4HI	GCNGC	3 cut(s)	9, 736, 783
FokI	GGATG	5 cut(s)	474, 611, 716, 903, 922
Fsp4HI	GCNGC	3 cut(s)	9, 736, 783
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	3 cut(s)	9, 736, 783
GsaI	CCCAGC	1 cut(s)	909
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	456
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HinfI	GANTC	2 cut(s)	277, 772
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	7 cut(s)	112, 171, 282, 544, 777, 840, 937
Hpy188III	TCNNGA	3 cut(s)	218, 317, 632
Hpy8I	GTNNAC	1 cut(s)	805
HpyCH4III	ACNGT	3 cut(s)	26, 809, 868
HpyCH4IV	ACGT	1 cut(s)	872
HpyCH4V	TGCA	8 cut(s)	263, 328, 450, 563, 605, 611, 738, 864
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	6 cut(s)	396, 429, 473, 623, 756, 788
HpySE526I	ACGT	1 cut(s)	872
HspAI	GCGC	1 cut(s)	454
Kpn2I	TCCGGA	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	203
KspAI	GTTAAC	1 cut(s)	805
Kzo9I	GATC	2 cut(s)	665, 693
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	2 cut(s)	722, 769
LweI	GCATC	3 cut(s)	493, 592, 694
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	3 cut(s)	20, 57, 868
MalI	GATC	2 cut(s)	667, 695
MboI	GATC	2 cut(s)	665, 693
MboII	GAAGA	3 cut(s)	137, 221, 703
MfeI	CAATTG	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	817
MluCI	AATT	6 cut(s)	73, 150, 389, 556, 574, 948
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	7 cut(s)	112, 138, 190, 200, 472, 494, 548
Mph1103I	ATGCAT	1 cut(s)	265
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	5 cut(s)	153, 407, 660, 804, 970
MslI	CAYNNNNRTG	2 cut(s)	64, 722
MspA1I	CMGCKG	1 cut(s)	782
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	5 cut(s)	133, 311, 458, 683, 887
MunI	CAATTG	1 cut(s)	574
MvaI	CCWGG	5 cut(s)	133, 311, 458, 683, 887
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	2 cut(s)	665, 693
NlaIV	GGNNCC	2 cut(s)	201, 315
NmuCI	GTSAC	2 cut(s)	20, 57
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	6 cut(s)	163, 263, 454, 550, 648, 864
PaeI	GCATGC	3 cut(s)	263, 454, 864
PaeR7I	CTCGAG	1 cut(s)	116
PciI	ACATGT	2 cut(s)	159, 546
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	772
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	3 cut(s)	10, 737, 784
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PscI	ACATGT	2 cut(s)	159, 546
Psp1406I	AACGTT	1 cut(s)	872
Psp6I	CCWGG	5 cut(s)	131, 309, 456, 681, 885
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	5 cut(s)	131, 309, 456, 681, 885
PspN4I	GGNNCC	2 cut(s)	201, 315
PspPI	GGNCC	1 cut(s)	314
PspXI	VCTCGAGB	1 cut(s)	116
PsrI	GAACNNNNNNTAC	2 cut(s)	819, 851
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	2 cut(s)	64, 722
SaqAI	TTAA	5 cut(s)	153, 407, 660, 804, 970
SatI	GCNGC	3 cut(s)	9, 736, 783
Sau3AI	GATC	2 cut(s)	665, 693
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	5 cut(s)	133, 311, 458, 683, 887
SduI	GDGCHC	1 cut(s)	817
SfaNI	GCATC	3 cut(s)	493, 592, 694
Sfr274I	CTCGAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	64, 722
SmlI	CTYRAG	2 cut(s)	116, 406
SmoI	CTYRAG	2 cut(s)	116, 406
SphI	GCATGC	3 cut(s)	263, 454, 864
Sse9I	AATT	6 cut(s)	73, 150, 389, 556, 574, 948
StyD4I	CCNGG	5 cut(s)	131, 309, 456, 681, 885
TaaI	ACNGT	3 cut(s)	26, 809, 868
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	1 cut(s)	117
TasI	AATT	6 cut(s)	73, 150, 389, 556, 574, 948
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	5 cut(s)	153, 407, 660, 804, 970
Tru9I	TTAA	5 cut(s)	153, 407, 660, 804, 970
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	2 cut(s)	20, 57
TseI	GCWGC	3 cut(s)	8, 735, 782
Tsp45I	GTSAC	2 cut(s)	20, 57
TspDTI	ATGAA	5 cut(s)	51, 235, 326, 845, 926
TspRI	CASTG	1 cut(s)	729
Van91I	CCANNNNNTGG	1 cut(s)	497
Vha464I	CTTAAG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	3 cut(s)	73, 389, 556
XceI	RCATGY	6 cut(s)	163, 263, 454, 550, 648, 864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.