Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015707

Physical Location & Seq

Genomic Coordinates Forward (+)

42496754 .. 42497740

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACCTCTAAACTTGACATGCACGACATTACTGGTTATATTAGATTGGATAGAACTATTGCAGCAAATAAACAAAGTTATTTGATGGATTTTGCAGTGTCAGATTTGCTGCAAAGACCATCTAACATCTCAGTTCTGTACTGGCCACTTCTATTTTGGAAATATTTGGTTGATTACTTTCTAAAATTGCATATGTTGGCTCATTATTTTTCCTGTGACAGTGAAGAGAATCTGACAGTTGCTCTCAGTAGAATGGGAGTTAACTGTCGTGCTCTTGGCGATGTAATGAATGTTTGGAATAAGCATTATCAGTTGGCATGCACCGTAACGTTTGAAGCTGTCCAGGGGACATCATGCGAAGCTGGGATTAACCATCCAAATCAATACTTCTCTGACAGCCAAATAATTATGAAGTCAATGGTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_lrg

Protein Analysis

142

Amino Acids

16.4

Weight (kDa)

6.27

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_lrg	PF04104	69 - 130	9.7e-11	Eukaryotic and archaeal DNA primase, large subunit C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015707)

Species	Orthologous Gene IDs
malus_domestica	MD16G1122100.v1.1
pyrus_communis	pycom16g10460
rosa_chinensis	RchiOBHm_Chr4g0417231 RchiOBHm_Chr4g0417241 RchiOBHm_Chr4g0417251 RchiOBHm_Chr4g0417261
rosa_laevigata	RLG00000007921
rosa_multiflora	Rmu_sc0000646.1_g000011 Rmu_sc0002370.1_g000020
rosa_samantha	Rh4AG209800 Rh4CG220900 Rh4DG207500 Rh4DG207600 Rh4DG207700
rosa_wichuraiana	Rw4G017730 Rw4G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	143
AfaI	GTAC	2 cut(s)	140, 423
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	2 cut(s)	338, 362
AluI	AGCT	2 cut(s)	338, 362
Alw21I	GWGCWC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	62, 109
BalI	TGGCCA	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	74, 96
BccI	CCATC	3 cut(s)	79, 127, 381
BciT130I	CCWGG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	63, 110
BlsI	GCNGC	2 cut(s)	64, 111
Bme1390I	CCNGG	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	37, 146
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	144, 259
BseNI	ACTGG	2 cut(s)	37, 146
BseXI	GCAGC	2 cut(s)	74, 96
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	2 cut(s)	143, 258
BsrI	ACTGG	2 cut(s)	37, 146
BssECI	CCNNGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	221, 238, 266, 325
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	2 cut(s)	130, 245
BstF5I	GGATG	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	2 cut(s)	22, 321
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	74, 96
BsuRI	GGCC	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	102, 226
Cac8I	GCNNGC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	139, 422
CviAII	CATG	3 cut(s)	19, 318, 354
CviJI	RGCY	5 cut(s)	145, 200, 338, 362, 399
CviKI_1	RGCY	5 cut(s)	145, 200, 338, 362, 399
CviQI	GTAC	2 cut(s)	139, 422
DdeI	CTNAG	2 cut(s)	130, 245
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	3 cut(s)	22, 321, 357
FaiI	YATR	7 cut(s)	20, 39, 192, 194, 319, 355, 410
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	3 cut(s)	18, 317, 353
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	63, 110
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	2 cut(s)	63, 110
GluI	GCNGC	2 cut(s)	63, 110
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	145
Hin1II	CATG	3 cut(s)	22, 321, 357
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	229
HpaI	GTTAAC	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	103, 234, 394
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	4 cut(s)	221, 238, 266, 325
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	6 cut(s)	22, 62, 95, 112, 190, 321
HpyF3I	CTNAG	2 cut(s)	130, 245
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	3 cut(s)	22, 321, 357
KspAI	GTTAAC	1 cut(s)	262
LpnPI	CCDG	6 cut(s)	18, 127, 226, 329, 348, 356
Lsp1109I	GCAGC	2 cut(s)	74, 96
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	215, 325
MboII	GAAGA	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	2 cut(s)	185, 405
MluNI	TGGCCA	1 cut(s)	145
MnlI	CCTC	1 cut(s)	16
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	3 cut(s)	261, 369, 427
Msp20I	TGGCCA	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
NdeI	CATATG	1 cut(s)	192
NlaIII	CATG	3 cut(s)	22, 321, 357
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	2 cut(s)	22, 321
PaeI	GCATGC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	64, 111
Psp1406I	AACGTT	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	342
RsaI	GTAC	2 cut(s)	140, 423
RsaNI	GTAC	2 cut(s)	139, 422
SaqAI	TTAA	3 cut(s)	261, 369, 427
SatI	GCNGC	2 cut(s)	63, 110
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	4 cut(s)	8, 332, 340, 364
SphI	GCATGC	1 cut(s)	321
Sse9I	AATT	2 cut(s)	185, 405
SspI	AATATT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	4 cut(s)	221, 238, 266, 325
TaiI	ACGT	1 cut(s)	332
TasI	AATT	2 cut(s)	185, 405
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	3 cut(s)	261, 369, 427
Tru9I	TTAA	3 cut(s)	261, 369, 427
TscAI	CASTG	2 cut(s)	102, 226
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	62, 109
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	302, 425
TspRI	CASTG	2 cut(s)	102, 226
XceI	RCATGY	2 cut(s)	22, 321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.