Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015707

Physical Location & Seq

Genomic Coordinates Forward (+)

40170788 .. 40172707

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG207600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAAAGCCTGAAGCTCAAAGGTCACACATGGCAGAATTTGGTTTTGTTTGCCTACAAGAAAGTTGATATTTCAGAACTCGAGAGTGTAATGGACAAACTGACCCAGGTTGCGCGTTCCACGAGTCAATCTTTACCCACTGGTGGTTTCCCTTGTTGCCACACACATTTGCGCAGTCATCTGTCAAAAGCACTGATGTTGACTAACAGAAATTGGACATCAACTATAGTAGAACAAGAGAAAAATCGGTTGACTCCTATAGTAGAAACCCTATCCACAAGCTACCTGGGTCCGGACTATTCTCAGGCAGTTCATTACCTTGTTTTATCGTGGTCTATTAGCCATAGGTCCCAGTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_lrg

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

9.43

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015707)

Species	Orthologous Gene IDs
malus_domestica	MD16G1122100.v1.1
pyrus_communis	pycom16g10460
rosa_chinensis	RchiOBHm_Chr4g0417231 RchiOBHm_Chr4g0417241 RchiOBHm_Chr4g0417251 RchiOBHm_Chr4g0417261
rosa_laevigata	RLG00000007921
rosa_multiflora	Rmu_sc0000646.1_g000011 Rmu_sc0002370.1_g000020
rosa_samantha	Rh4AG209800 Rh4CG220900 Rh4DG207500 Rh4DG207600 Rh4DG207700
rosa_wichuraiana	Rw4G017730 Rw4G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	143, 292
AjnI	CCWGG	2 cut(s)	105, 285
AluBI	AGCT	2 cut(s)	16, 282
AluI	AGCT	2 cut(s)	16, 282
Ama87I	CYCGRG	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	2 cut(s)	115, 174
AspS9I	GGNCC	2 cut(s)	290, 348
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	290, 348
BauI	CACGAG	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	107, 287
BfmI	CTRYAG	2 cut(s)	225, 258
Bme1390I	CCNGG	2 cut(s)	107, 287
Bme18I	GGWCC	2 cut(s)	290, 348
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	290, 348
BmiI	GGNNCC	2 cut(s)	291, 350
BmrFI	CCNGG	2 cut(s)	107, 287
BmrI	ACTGGG	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	105, 286
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 292
Bse1I	ACTGG	2 cut(s)	145, 352
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	107, 287
BseDI	CCNNGG	2 cut(s)	105, 286
BseLI	CCNNNNNNNGG	2 cut(s)	143, 292
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	145, 352
Bsh1236I	CGCG	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	143, 292
BsmFI	GGGAC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	291, 350
BsrI	ACTGG	2 cut(s)	145, 352
BssECI	CCNNGG	2 cut(s)	105, 286
BssSI	CACGAG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	107, 287
BstDEI	CTNAG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	115, 174
BstNI	CCWGG	2 cut(s)	107, 287
BstSCI	CCNGG	2 cut(s)	105, 285
BstSFI	CTRYAG	2 cut(s)	225, 258
BstUI	CGCG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	138, 191
CfoI	GCGC	2 cut(s)	115, 174
Cfr13I	GGNCC	2 cut(s)	290, 348
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	4 cut(s)	9, 16, 282, 342
CviKI_1	RGCY	4 cut(s)	9, 16, 282, 342
DdeI	CTNAG	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	290, 348
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	105, 285
FaeI	CATG	1 cut(s)	33
FaiI	YATR	4 cut(s)	31, 227, 260, 345
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	29
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	2 cut(s)	114, 173
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	2 cut(s)	115, 174
Hin1II	CATG	1 cut(s)	33
Hin6I	GCGC	2 cut(s)	113, 172
HinP1I	GCGC	2 cut(s)	113, 172
HincII	GTYRAC	2 cut(s)	201, 252
HindII	GTYRAC	2 cut(s)	201, 252
HinfI	GANTC	2 cut(s)	124, 253
HpaII	CCGG	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	201, 252
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	82, 293
Hpy8I	GTNNAC	2 cut(s)	201, 252
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	33
HspAI	GCGC	2 cut(s)	113, 172
Kpn2I	TCCGGA	1 cut(s)	292
LpnPI	CCDG	8 cut(s)	23, 92, 119, 126, 272, 290, 299, 306
MaeIII	GTNAC	1 cut(s)	23
MluCI	AATT	2 cut(s)	37, 211
MlyI	GAGTC	2 cut(s)	133, 247
MroI	TCCGGA	1 cut(s)	292
MseI	TTAA	1 cut(s)	361
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	107, 287
MvaI	CCWGG	2 cut(s)	107, 287
MvnI	CGCG	1 cut(s)	115
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	2 cut(s)	291, 350
NmuCI	GTSAC	1 cut(s)	23
NsbI	TGCGCA	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	80
PleI	GAGTC	2 cut(s)	132, 247
PpsI	GAGTC	2 cut(s)	132, 247
PpuMI	RGGWCCY	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	105, 285
PspGI	CCWGG	2 cut(s)	105, 285
PspN4I	GGNNCC	2 cut(s)	291, 350
PspPI	GGNCC	2 cut(s)	290, 348
PspPPI	RGGWCCY	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	290, 348
SchI	GAGTC	2 cut(s)	133, 247
ScrFI	CCNGG	2 cut(s)	107, 287
SetI	ASST	7 cut(s)	18, 25, 111, 284, 288, 321, 350
SfcI	CTRYAG	2 cut(s)	225, 258
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	290, 348
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	37, 211
StyD4I	CCNGG	2 cut(s)	105, 285
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	37, 211
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TscAI	CASTG	2 cut(s)	145, 198
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	17, 302
TspRI	CASTG	2 cut(s)	145, 198
VpaK11BI	GGWCC	2 cut(s)	290, 348
XapI	RAATTY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.