MD16G1134000.v1.1

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0007739
Physical Location & Seq
Forward (+)
10286449 .. 10294470
8022 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1134000.v1.1.491

Sequence Viewer

Length: 2190 bp
ATGGCTTTGGAGGACGACGACTGGGATTTGAGCGCCGAAGAATTCGACTCTCTCGAAAGAGACGCGTTCCAGAAACTCGCTCAGCAACGCGTCAACTCCGCTTCCACTTGTTCTTCCTCCTCCTCATCTTATCCTTCATACGATCACCGCCAGGTGCACCAGTCTTTCCTTGCCACGAACAATTACAACAGCAACTGCAGCTTCCAGAGTTCCCCTGCGAAACCCGTTTCGAATTCTCTTCCGAACAAGGTAGCACCTTTGTCAACCGGAACTAGAGTATTACCTCCATCAGTCCCATGTAAAGTAAACCTGGAATATGAACGACTAAAAGAGCTACCGAAGATCACTGTTAAATTTTTTCTTCATGCTAGCGGAAACATTGCTGCAAAATTTCCTTATGACCAGGGGGTAGTAGGTGCTGTTCGCAAAATCCCCAAAGCCACATGGTATGCAAAAGAAAGGTTATGGATGTTTCCTATACCTTCTTTGTCATCTGCAGAGAAAGTTCTTCATGAGACATCTAGTGTTAATGTTGAGATAGAGAACTTAGATCCCTTAGTCCACCGTGCTATTGCTGCTGCCTCTGTTGTTCCAGACCTTCGAGACCAATATGATAGGATACCTAGTTGTATTGAATCAAAGCTCTTGCCATTTCAGCGAGAAGGTGTTAGGTTTATTTTGCAGCACGGGGGGCGTGCTCTCCTCGCAGATGAAATGGGATTGGGAAAGACTTTACAGGCTATTGCTGTTGCATCTTGTGTTCGTGACTCTTGGCCTGTTCTTATAATCACACCGTCTTCCTTGCGTTTGCAATGGGCCTCTATGATTCAACAATGGATGGACATCCCTTCATCAGATATACTTGTTGTTTTGTCTCAATGTGGTGGGTCAAACAAAAGCGGGTTTACAATTGTATCCTCAAACGTCAAAGGGACCATTCATCTTGATGGCCTATTTAACATCATCTCCTATGATGTAGTCCCTAAAATACAGAATCTACTATTGGCATCAGAGTTTAAGGTTGTGATTGCAGATGAGTCACACTTTTTGAAAAATGCTCAAGCAAAAAGAACAAGTGCCTGCCTTCCTGTCATAAAGAGGGCTCAATACGCAATATTGTTGAGTGGTACTCCTGCTTTGTCCCGACCGATTGAACTATTTAAGCAGCTTGAAGCCTTGTATCCTGATGTATACAAAAGTGTTCACGAATATGGTAATCGATATTGCAAGGGAGGAACGTTTGGATTGTATCAAGGTGCATGTAACCATGAAGAATTGCATAATTTGATGAAGGCAACAGTGATGATTCGCAGACTAAAAAATGATGTTCTTTCTGAGCTTCCTGTGAAGCGTAGGCAACAGGTCTTTTTGGATTTGGCTGAAAAGGACATGAAACAAATCAATGCTTTATTCCGGGAGTTGGAAGTGGTAAAAGGGAAAATTAAGGCCTGCCAATCCAAAGAAGAGGTTGATTCACTTAAGTTTACTGAGAAGAATCTTATTAATAAGATTTATACTGATTCTGCTGAGGCTAAGATCCCTGCAGTTTTGGATTACCTGGGAACTGTCATTGAGGCAGGCTGCAAGTTTCTAGTATTTGCACACCATCAGTCCATGATTGATTCGATATATCAGTTTCTTCTGAAAAAGAAAGTGGGTTGCATTCGAATTGATGGAAGTATCCCTACTGTTGCGAGGCAAGCTTATGTTACAGAATTTCAAGAAAAAGATTCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGATTAACTTTGACAGCTGCAAGCACTGTTATTTTTGCAGAATTGTCATGGACTCCTGGCGACCTAATTCAAGCTGAAGATCGTGCTCATAGAATAGGCCAGGTGGCTTCGGTCAATATATATTACCTTCTGGCAAACGATACAGTTGATGACATCATATGGGATGTTGTTCAGAGCAAGTTGGAAAATCTGGGACAGATGCTCGATGGCCAGGAGAATACTATGGAAGTTGCAGCCAGCCAGACCCGAATCACCCCTGCAAGCCAGCCGCGAAGCAGCCCTGCAAAGCAAAAACTTGCATTCAGCCAACCGGGAAGCAGTCCATCAAAGCAGAAAACACTCGACTCTTACATGAAGCGTTGCAACAGCAGGGAAGACCCCAAAAGTCAGCCTAAGTTCAAAACCCAAAGGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

730

Amino Acids

80.98

Weight (kDa)

8.71

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 218 - 487 1.9e-34 SNF2-related domain
Helicase_C PF00271 516 - 624 4e-18 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 785
AccI GTMKAC 1 cut(s) 1191
AccII CGCG 3 cut(s) 65, 90, 2044
AciI CCGC 5 cut(s) 99, 148, 372, 900, 2042
AclI AACGTT 1 cut(s) 1238
AclWI GGATC 2 cut(s) 545, 1531
AcoI YGGCCR 1 cut(s) 1981
AcsI RAATTY 5 cut(s) 41, 232, 353, 389, 1715
AcuI CTGAAG 1 cut(s) 1869
AfaI GTAC 1 cut(s) 1129
AfiI CCNNNNNNNGG 1 cut(s) 1420
AflII CTTAAG 1 cut(s) 1478
AflIII ACRYGT 2 cut(s) 63, 88
AgsI TTSAA 8 cut(s) 635, 830, 1051, 1154, 1172, 1721, 1844, 2173
AjnI CCWGG 7 cut(s) 150, 309, 402, 1557, 1828, 1872, 1983
AjuI GAANNNNNNNTTGG 2 cut(s) 986, 1018
AluBI AGCT 9 cut(s) 201, 334, 643, 1168, 1339, 1703, 1763, 1790, 1847
AluI AGCT 9 cut(s) 201, 334, 643, 1168, 1339, 1703, 1763, 1790, 1847
Alw21I GWGCWC 3 cut(s) 159, 700, 1861
Alw26I GTCTC 4 cut(s) 54, 509, 597, 879
Alw44I GTGCAC 1 cut(s) 155
AlwI GGATC 2 cut(s) 545, 1531
AlwNI CAGNNNCTG 1 cut(s) 195
AoxI GGCC 7 cut(s) 773, 816, 949, 1446, 1870, 1981, 2183
ApaLI GTGCAC 1 cut(s) 155
ApoI RAATTY 5 cut(s) 41, 232, 353, 389, 1715
AseI ATTAAT 1 cut(s) 1503
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 3 cut(s) 816, 933, 2184
AsuC2I CCSGG 2 cut(s) 1415, 2085
AsuHPI GGTGA 2 cut(s) 137, 2017
AsuII TTCGAA 2 cut(s) 230, 1666
AsuNHI GCTAGC 1 cut(s) 368
AvaII GGWCC 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 159
BaeI ACNNNNGTAYC 2 cut(s) 897, 930
BalI TGGCCA 1 cut(s) 1983
BanII GRGCYC 1 cut(s) 1105
BarI GAAGNNNNNNTAC 2 cut(s) 1669, 1701
BbsI GAAGAC 2 cut(s) 789, 2154
Bbv12I GWGCWC 3 cut(s) 159, 700, 1861
BbvCI CCTCAGC 1 cut(s) 1527
BccI CCATC 7 cut(s) 295, 832, 941, 1614, 1667, 1973, 2104
BciT130I CCWGG 7 cut(s) 152, 311, 404, 1559, 1830, 1874, 1985
BciVI GTATCC 4 cut(s) 612, 925, 1191, 1691
BcnI CCSGG 2 cut(s) 1415, 2085
BcoDI GTCTC 4 cut(s) 54, 509, 597, 879
BfaI CTAG 5 cut(s) 273, 369, 522, 624, 1592
BfmI CTRYAG 3 cut(s) 196, 495, 1542
BfoI RGCGCY 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 1478
BfuI GTATCC 4 cut(s) 612, 925, 1191, 1691
BlpI GCTNAGC 1 cut(s) 81
Bme1390I CCNGG 9 cut(s) 152, 311, 404, 1415, 1559, 1830, 1874, 1985, 2085
Bme18I GGWCC 1 cut(s) 933
BmgT120I GGNCC 3 cut(s) 816, 933, 2184
BmiI GGNNCC 1 cut(s) 934
BmrFI CCNGG 9 cut(s) 152, 311, 404, 1415, 1559, 1830, 1874, 1985, 2085
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 3 cut(s) 761, 1016, 1962
BmtI GCTAGC 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 2 cut(s) 789, 2154
BplI GAGNNNNNCTC 2 cut(s) 1114, 1146
BpmI CTGGAG 1 cut(s) 1785
Bpu10I CCTNAGC 1 cut(s) 1527
Bpu1102I GCTNAGC 1 cut(s) 81
Bpu14I TTCGAA 2 cut(s) 230, 1666
BpuEI CTTGAG 1 cut(s) 1044
BpuMI CCSGG 2 cut(s) 1415, 2085
Bsa29I ATCGAT 1 cut(s) 1219
BsaBI GATNNNNATC 1 cut(s) 842
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 2 cut(s) 403, 1558
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 950, 980
Bsc4I CCNNNNNNNGG 1 cut(s) 1420
Bse1I ACTGG 2 cut(s) 26, 160
Bse3DI GCAATG 2 cut(s) 378, 818
Bse8I GATNNNNATC 1 cut(s) 842
BseBI CCWGG 7 cut(s) 152, 311, 404, 1559, 1830, 1874, 1985
BseCI ATCGAT 1 cut(s) 1219
BseDI CCNNGG 2 cut(s) 403, 1558
BseGI GGATG 4 cut(s) 474, 843, 843, 1942
BseJI GATNNNNATC 1 cut(s) 842
BseLI CCNNNNNNNGG 1 cut(s) 1420
BseMI GCAATG 2 cut(s) 378, 818
BseMII CTCAG 4 cut(s) 95, 1326, 1479, 1518
BseNI ACTGG 2 cut(s) 26, 160
BseRI GAGGAG 3 cut(s) 109, 112, 692
BseSI GKGCMC 1 cut(s) 159
Bsh1236I CGCG 3 cut(s) 65, 90, 2044
Bsh1285I CGRYCG 1 cut(s) 1148
BshFI GGCC 7 cut(s) 775, 818, 951, 1448, 1872, 1983, 2185
BshVI ATCGAT 1 cut(s) 1219
BsiEI CGRYCG 1 cut(s) 1148
BsiHKAI GWGCWC 3 cut(s) 159, 700, 1861
BsiSI CCGG 3 cut(s) 267, 1414, 2084
BslFI GGGAC 5 cut(s) 278, 946, 965, 1126, 1980
BslI CCNNNNNNNGG 1 cut(s) 1420
BsmAI GTCTC 4 cut(s) 54, 509, 597, 879
BsmBI CGTCTC 1 cut(s) 54
BsmFI GGGAC 5 cut(s) 278, 946, 965, 1126, 1980
BsmI GAATGC 2 cut(s) 1662, 2072
BsnI GGCC 7 cut(s) 775, 818, 951, 1448, 1872, 1983, 2185
Bso31I GGTCTC 1 cut(s) 597
Bsp119I TTCGAA 2 cut(s) 230, 1666
Bsp1286I GDGCHC 4 cut(s) 159, 700, 1105, 1861
Bsp143I GATC 5 cut(s) 142, 342, 550, 1536, 1852
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 5 cut(s) 99, 148, 372, 900, 2042
BspANI GGCC 7 cut(s) 775, 818, 951, 1448, 1872, 1983, 2185
BspCNI CTCAG 4 cut(s) 94, 1327, 1480, 1519
BspDI ATCGAT 1 cut(s) 1219
BspFNI CGCG 3 cut(s) 65, 90, 2044
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 934
BspMAI CTGCAG 3 cut(s) 200, 499, 1546
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 2 cut(s) 545, 1531
BspT104I TTCGAA 2 cut(s) 230, 1666
BspTI CTTAAG 1 cut(s) 1478
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 2 cut(s) 378, 818
BsrI ACTGG 2 cut(s) 26, 160
BssECI CCNNGG 2 cut(s) 403, 1558
BssMI GATC 5 cut(s) 142, 342, 550, 1536, 1852
BssNAI GTATAC 1 cut(s) 1192
Bst1107I GTATAC 1 cut(s) 1192
Bst2UI CCWGG 7 cut(s) 152, 311, 404, 1559, 1830, 1874, 1985
Bst4CI ACNGT 8 cut(s) 349, 566, 795, 1300, 1567, 1690, 1801, 1918
Bst6I CTCTTC 2 cut(s) 243, 1458
BstAFI CTTAAG 1 cut(s) 1478
BstBI TTCGAA 2 cut(s) 230, 1666
BstDEI CTNAG 8 cut(s) 81, 547, 556, 1335, 1488, 1527, 1533, 2166
BstF5I GGATG 4 cut(s) 474, 843, 843, 1942
BstFNI CGCG 3 cut(s) 65, 90, 2044
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 5 cut(s) 145, 345, 553, 1539, 1855
BstMAI GTCTC 4 cut(s) 54, 509, 597, 879
BstMBI GATC 5 cut(s) 142, 342, 550, 1536, 1852
BstMCI CGRYCG 1 cut(s) 1148
BstMWI GCNNNNNNNGC 7 cut(s) 198, 575, 655, 691, 704, 1109, 1700
BstNI CCWGG 7 cut(s) 152, 311, 404, 1559, 1830, 1874, 1985
BstNSI RCATGY 1 cut(s) 1263
BstSCI CCNGG 9 cut(s) 150, 309, 402, 1413, 1557, 1828, 1872, 1983, 2083
BstSFI CTRYAG 3 cut(s) 196, 495, 1542
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 3 cut(s) 65, 90, 2044
BstV2I GAAGAC 2 cut(s) 789, 2154
BstX2I RGATCY 2 cut(s) 550, 1536
BstYI RGATCY 2 cut(s) 550, 1536
BstZ17I GTATAC 1 cut(s) 1192
Bsu15I ATCGAT 1 cut(s) 1219
BsuI GTATCC 4 cut(s) 612, 925, 1191, 1691
BsuRI GGCC 7 cut(s) 775, 818, 951, 1448, 1872, 1983, 2185
BsuTUI ATCGAT 1 cut(s) 1219
BtsCI GGATG 4 cut(s) 474, 843, 843, 1942
BtsI GCAGTG 1 cut(s) 1752
BtsIMutI CAGTG 4 cut(s) 345, 1305, 1752, 1797
CaiI CAGNNNCTG 1 cut(s) 195
CciI TCATGA 1 cut(s) 511
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 3 cut(s) 816, 933, 2184
ClaI ATCGAT 1 cut(s) 1219
CseI GACGC 2 cut(s) 71, 79
Csp6I GTAC 1 cut(s) 1128
CviQI GTAC 1 cut(s) 1128
DdeI CTNAG 8 cut(s) 81, 547, 556, 1335, 1488, 1527, 1533, 2166
DpnI GATC 5 cut(s) 144, 344, 552, 1538, 1854
DpnII GATC 5 cut(s) 142, 342, 550, 1536, 1852
EaeI YGGCCR 1 cut(s) 1981
Eam1104I CTCTTC 2 cut(s) 243, 1458
EarI CTCTTC 2 cut(s) 243, 1458
Eco147I AGGCCT 1 cut(s) 1448
Eco24I GRGCYC 1 cut(s) 1105
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 933
Eco57I CTGAAG 1 cut(s) 1869
EcoO109I RGGNCCY 1 cut(s) 2184
EcoRI GAATTC 2 cut(s) 41, 232
EcoRII CCWGG 7 cut(s) 150, 309, 402, 1557, 1828, 1872, 1983
EcoT38I GRGCYC 1 cut(s) 1105
Esp3I CGTCTC 1 cut(s) 54
FaqI GGGAC 5 cut(s) 278, 946, 965, 1126, 1980
FauI CCCGC 1 cut(s) 893
FauNDI CATATG 1 cut(s) 1931
FblI GTMKAC 1 cut(s) 1191
FokI GGATG 4 cut(s) 481, 830, 850, 1949
FriOI GRGCYC 1 cut(s) 1105
FspBI CTAG 5 cut(s) 273, 369, 522, 624, 1592
GlaI GCGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 1785
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 7 cut(s) 775, 818, 951, 1448, 1872, 1983, 2185
HapII CCGG 3 cut(s) 267, 1414, 2084
HgaI GACGC 2 cut(s) 71, 79
HhaI GCGC 1 cut(s) 35
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 2 cut(s) 94, 264
HindII GTYRAC 2 cut(s) 94, 264
HindIII AAGCTT 1 cut(s) 1701
HpaII CCGG 3 cut(s) 267, 1414, 2084
HphI GGTGA 2 cut(s) 137, 2017
Hpy166II GTNNAC 9 cut(s) 94, 157, 264, 307, 562, 906, 1192, 1204, 1485
Hpy188I TCNGA 6 cut(s) 243, 856, 1012, 1336, 1644, 1947
Hpy8I GTNNAC 9 cut(s) 94, 157, 264, 307, 562, 906, 1192, 1204, 1485
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 8 cut(s) 144, 492, 608, 656, 858, 1094, 1285, 1910
HpyCH4III ACNGT 8 cut(s) 349, 566, 795, 1300, 1567, 1690, 1801, 1918
HpyCH4IV ACGT 2 cut(s) 924, 1238
HpyF10VI GCNNNNNNNGC 7 cut(s) 198, 575, 655, 691, 704, 1109, 1700
HpyF3I CTNAG 8 cut(s) 81, 547, 556, 1335, 1488, 1527, 1533, 2166
HpySE526I ACGT 2 cut(s) 924, 1238
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 5 cut(s) 142, 342, 550, 1536, 1852
LweI GCATC 3 cut(s) 761, 1016, 1962
MaeI CTAG 5 cut(s) 273, 369, 522, 624, 1592
MaeII ACGT 2 cut(s) 924, 1238
MaeIII GTNAC 4 cut(s) 764, 1038, 1262, 1708
MalI GATC 5 cut(s) 144, 344, 552, 1538, 1854
MboI GATC 5 cut(s) 142, 342, 550, 1536, 1852
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 2 cut(s) 550, 1536
MhlI GDGCHC 4 cut(s) 159, 700, 1105, 1861
MlsI TGGCCA 1 cut(s) 1983
MluI ACGCGT 2 cut(s) 63, 88
MluNI TGGCCA 1 cut(s) 1983
MlyI GAGTC 5 cut(s) 41, 761, 1046, 1819, 2111
MmeI TCCRAC 3 cut(s) 1401, 1753, 1935
Mox20I TGGCCA 1 cut(s) 1983
MscI TGGCCA 1 cut(s) 1983
MslI CAYNNNNRTG 2 cut(s) 945, 1209
Msp20I TGGCCA 1 cut(s) 1983
MspA1I CMGCKG 1 cut(s) 1790
MspCI CTTAAG 1 cut(s) 1478
MspI CCGG 3 cut(s) 267, 1414, 2084
MspR9I CCNGG 9 cut(s) 152, 311, 404, 1415, 1559, 1830, 1874, 1985, 2085
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 2 cut(s) 1662, 2072
MvaI CCWGG 7 cut(s) 152, 311, 404, 1559, 1830, 1874, 1985
MvnI CGCG 3 cut(s) 65, 90, 2044
MwoI GCNNNNNNNGC 7 cut(s) 198, 575, 655, 691, 704, 1109, 1700
NciI CCSGG 2 cut(s) 1415, 2085
NdeI CATATG 1 cut(s) 1931
NdeII GATC 5 cut(s) 142, 342, 550, 1536, 1852
NheI GCTAGC 1 cut(s) 368
NlaIV GGNNCC 1 cut(s) 934
NmuCI GTSAC 2 cut(s) 764, 1038
NspI RCATGY 1 cut(s) 1263
NspV TTCGAA 2 cut(s) 230, 1666
PagI TCATGA 1 cut(s) 511
PceI AGGCCT 1 cut(s) 1448
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 2 cut(s) 1662, 2072
PfoI TCCNGGA 1 cut(s) 1413
PleI GAGTC 5 cut(s) 41, 761, 1045, 1819, 2111
PpsI GAGTC 5 cut(s) 41, 761, 1045, 1819, 2111
PshBI ATTAAT 1 cut(s) 1503
PsiI TTATAA 1 cut(s) 785
Psp1406I AACGTT 1 cut(s) 1238
Psp6I CCWGG 7 cut(s) 150, 309, 402, 1557, 1828, 1872, 1983
PspGI CCWGG 7 cut(s) 150, 309, 402, 1557, 1828, 1872, 1983
PspN4I GGNNCC 1 cut(s) 934
PspPI GGNCC 3 cut(s) 816, 933, 2184
PsrI GAACNNNNNNTAC 2 cut(s) 405, 437
PstI CTGCAG 3 cut(s) 200, 499, 1546
PstNI CAGNNNCTG 1 cut(s) 195
PsuI RGATCY 2 cut(s) 550, 1536
PvuII CAGCTG 1 cut(s) 1790
RsaI GTAC 1 cut(s) 1129
RsaNI GTAC 1 cut(s) 1128
RseI CAYNNNNRTG 2 cut(s) 945, 1209
Sau3AI GATC 5 cut(s) 142, 342, 550, 1536, 1852
Sau96I GGNCC 3 cut(s) 816, 933, 2184
SchI GAGTC 5 cut(s) 41, 761, 1046, 1819, 2111
ScrFI CCNGG 9 cut(s) 152, 311, 404, 1415, 1559, 1830, 1874, 1985, 2085
SduI GDGCHC 4 cut(s) 159, 700, 1105, 1861
SfaNI GCATC 3 cut(s) 761, 1016, 1962
SfcI CTRYAG 3 cut(s) 196, 495, 1542
SfuI TTCGAA 2 cut(s) 230, 1666
SinI GGWCC 1 cut(s) 933
SmiMI CAYNNNNRTG 2 cut(s) 945, 1209
SmlI CTYRAG 2 cut(s) 1059, 1478
SmoI CTYRAG 2 cut(s) 1059, 1478
SseBI AGGCCT 1 cut(s) 1448
SsiI CCGC 5 cut(s) 99, 148, 372, 900, 2042
SspI AATATT 1 cut(s) 1116
SspMI CTAG 5 cut(s) 273, 369, 522, 624, 1592
StuI AGGCCT 1 cut(s) 1448
StyD4I CCNGG 9 cut(s) 150, 309, 402, 1413, 1557, 1828, 1872, 1983, 2083
TaaI ACNGT 8 cut(s) 349, 566, 795, 1300, 1567, 1690, 1801, 1918
TaiI ACGT 2 cut(s) 927, 1241
TaqI TCGA 9 cut(s) 45, 54, 230, 601, 1219, 1625, 1666, 1977, 2115
TaqII GACCGA 2 cut(s) 1162, 1873
TauI GCSGC 1 cut(s) 2044
TscAI CASTG 4 cut(s) 352, 1305, 1752, 1804
TseFI GTSAC 2 cut(s) 764, 1038
Tsp45I GTSAC 2 cut(s) 764, 1038
TspRI CASTG 4 cut(s) 352, 1305, 1752, 1804
Vha464I CTTAAG 1 cut(s) 1478
VneI GTGCAC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 933
VspI ATTAAT 1 cut(s) 1503
XapI RAATTY 5 cut(s) 41, 232, 353, 389, 1715
XceI RCATGY 1 cut(s) 1263
XmiI GTMKAC 1 cut(s) 1191
XspI CTAG 5 cut(s) 273, 369, 522, 624, 1592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.