Rroxscaffold_5G00369560

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007739
Physical Location & Seq
Forward (+)
51381970 .. 51390206
8237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369560.1

Sequence Viewer

Length: 2052 bp
ATGGATTTTGGGGCCGACGACGACGACGACTGGAACTTCAGCGCGGAAGAGCTTGATTCCCTCGAAAGAGACGCTTTCCAGAAACTCTCTCAGCAGCGCATCAACTCCGCTTCCACTTGTTCCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTTCATTCAATCGCCACCACCCACACCAGTCGTCTTTACCTACCACCACCACCACCACCAGCAATGCCTTCGAAAGCTTCATTCCGATTTCTCTTCCTAACCAGGTGCCGCTGCCGCCTTTGTCTCCTGGAGCCAGAGTATTACCTTCTTCTCTAGACGTTAAAGCGTTGGTAGCTGCTTTCCGCAAGATCCCCAAAGCCGCATGGAATGCAAAAGAAAGGTTATGGATGTTCCCTGTGTCTTCTTTGTCATCGGCAGAAAAAGTTCTTCATGAAGTTTCAGCAGTCAATGTTGAGATAGAGAACTTAGATCCCTTAGTCCACCGGGCCATTGCTGCAGTGTCTGTTGTTCCAGATATTCGAGACCTGTATGACAGGATACCTAGCTTTATTGAATCAAAGCTCTTGGGATTTCAGCGAGAAGGTGTAAGGTATCTTGTTAGTCTGGAGTTTGTTCCTGATTTAATGTTTATCTTGCAGCATGGAGGGCGTGCATTCCTTGCTGATGAAATGGGACTGGGGAAGACTTTACAGGCAAGACAGCCAAATAAGAATACTAATGATGTAGGACTACATAAGGCTATTGCTGTGGCTTCCTGCATTCGTGACTCATGGCCTGTTCTTATACTCACACCATCTTCATTGCGTCTGCAATGGGCCTCTGTTGTTTTGTCTCAATGTGGGGGTTCAAACAGAGCTGGATATACATTAGTATCCTCAAGTTCCAAAGGGACCATTCATCTTGATGGCCTATTTAACATAATCTCTTATGACATAGTCCCTAAACTACAGAATCTGCTAATGGCATCAGATTTTAAGATTGTGATTGCAGATGAGTCGCACTTTTTGAAAAATGCTCAAGCAAAAAGGACAACTGCTTCCCTGCCTGTCATCAAGAAAGCTCAATATGCAATACTGTTAAGTGGAACTCCTGCATTGTCCCGACCGATCGAACTATTTACACAGGGAACATTTGGAATGTATCAAGGTGCAAGTAACCATGAAGAATTGCATAATTTGTTGAAGGCAACAGTGATGATTCGGAGACTCAAAAATGATGTACTCTCTGAACTTCCTGTGAAGCGCAGACAACAGGTCTTCCTAGATTTGGCTGAAAAGGACATGAAACAAATCAATGCTTTATTTCGTGAGTTGGAGGTGGTAAAGCTGAAAATTAAGGCCTGCAAATCAAAAGAAGTTGATTCACTTAAATTTATGGAGAAGAATCTTATCAATAAGATTTATACTGATTCAGCGGAGGCCAAGATCCCAGCAGTTCTGGATTACCTGGGAACTGTCATTGAGGCTGGTTGCAAGTTTCTAGTATTTGCACATCATCAATCCATGATCGATGCAATATATCAGTTTCTTCTGAAGAAGAAAGTGAGTTGTATTCGAATTGATGGCAGTATACCTACAGTAGAGAGGCAAGCATATGTTACGCAGTTTCAAGAAAAAGATTCTGTCAAGGCAGCAGTGCTATCTATCAAAGCCGGAGGTGTGGGATTAACTTTAACAGCTGCAAGCACTGTAATATTTGCAGAATTGTCGTGGACTCCTGGTGACCTAATTCAAGCTGAAGATCGTGCTCACAGAATTGGCCAGGTGTCCTCGGTGAATGTATACTACCTTCTAGCGAACGACACAGTTGATGACATCATATGGGATGTTGTTCAGAGCAAGTTGGAAAATCTGGGACAGATGCTGGATGGCCATGAGAATTCGTTGGAAGTTTCACCCAGCCAGCCGCGAAATAGCCCTGCAAAGCCGAAAAATAGCCCTGCCAAGCCGAAAAATAGCCCTGCAAAGCAGAAAACACTGGATTCTTTCTTGAAAGTTTCAACCAACCAGTCAAACATCAGCCCAGGAAAGCAAAAACACTTGATTCCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

683

Amino Acids

75.25

Weight (kDa)

8.68

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 190 - 372 3.9e-15 SNF2-related domain
Helicase_C PF00271 478 - 586 3e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccI GTMKAC 2 cut(s) 1567, 1779
AccII CGCG 2 cut(s) 44, 1906
AciI CCGC 8 cut(s) 44, 108, 266, 272, 340, 357, 1412, 1904
AclWI GGATC 3 cut(s) 340, 461, 1417
AcoI YGGCCR 2 cut(s) 1756, 1867
AcsI RAATTY 2 cut(s) 1367, 1876
AcuI CTGAAG 3 cut(s) 22, 1550, 1755
AfaI GTAC 1 cut(s) 1218
AfiI CCNNNNNNNGG 1 cut(s) 1264
AgsI TTSAA 9 cut(s) 166, 551, 846, 1006, 1180, 1607, 1730, 1990, 1998
AhdI GACNNNNNGTC 1 cut(s) 1250
AjnI CCWGG 6 cut(s) 258, 283, 1443, 1714, 1758, 2020
Alw21I GWGCWC 1 cut(s) 1747
Alw26I GTCTC 5 cut(s) 63, 285, 513, 834, 1195
AlwI GGATC 3 cut(s) 340, 461, 1417
AlwNI CAGNNNCTG 3 cut(s) 500, 952, 1861
AoxI GGCC 9 cut(s) 12, 483, 770, 813, 904, 1335, 1416, 1756, 1867
ApeKI GCWGC 7 cut(s) 94, 268, 332, 491, 634, 1628, 1676
ApoI RAATTY 2 cut(s) 1367, 1876
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 3 cut(s) 44, 99, 1242
AspS9I GGNCC 4 cut(s) 12, 483, 813, 888
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 1730, 1783, 1884
AsuII TTCGAA 2 cut(s) 228, 1552
AvaII GGWCC 1 cut(s) 888
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BalI TGGCCA 2 cut(s) 1758, 1869
BanI GGYRCC 1 cut(s) 262
BarI GAAGNNNNNNTAC 2 cut(s) 1770, 1802
BbsI GAAGAC 3 cut(s) 390, 686, 1246
Bbv12I GWGCWC 1 cut(s) 1747
BbvI GCAGC 7 cut(s) 106, 255, 319, 478, 646, 1640, 1663
BccI CCATC 4 cut(s) 799, 896, 1553, 1859
BcgI CGANNNNNNTGC 6 cut(s) 208, 242, 975, 1009, 1686, 1720
BciT130I CCWGG 6 cut(s) 260, 285, 1445, 1716, 1760, 2022
BciVI GTATCC 2 cut(s) 528, 880
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 5 cut(s) 63, 285, 513, 834, 1195
BfaI CTAG 5 cut(s) 311, 540, 1259, 1478, 1790
BfmI CTRYAG 3 cut(s) 492, 944, 1572
BfuI GTATCC 2 cut(s) 528, 880
Bme1390I CCNGG 7 cut(s) 260, 285, 482, 1445, 1716, 1760, 2022
Bme18I GGWCC 1 cut(s) 888
BmeRI GACNNNNNGTC 1 cut(s) 1250
BmgT120I GGNCC 4 cut(s) 12, 483, 813, 888
BmiI GGNNCC 4 cut(s) 13, 264, 289, 889
BmrFI CCNGG 7 cut(s) 260, 285, 482, 1445, 1716, 1760, 2022
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 4 cut(s) 108, 971, 1498, 1848
BmuI ACTGGG 1 cut(s) 683
BpiI GAAGAC 3 cut(s) 390, 686, 1246
BpmI CTGGAG 2 cut(s) 306, 623
Bpu14I TTCGAA 2 cut(s) 228, 1552
BpuEI CTTGAG 2 cut(s) 859, 999
BpuMI CCSGG 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 1506
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 3 cut(s) 1444, 1767, 2020
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 1264
Bse1I ACTGG 5 cut(s) 35, 184, 678, 1980, 2005
Bse3DI GCAATG 4 cut(s) 226, 486, 797, 815
BseBI CCWGG 6 cut(s) 260, 285, 1445, 1716, 1760, 2022
BseCI ATCGAT 1 cut(s) 1506
BseDI CCNNGG 3 cut(s) 1444, 1767, 2020
BseGI GGATG 3 cut(s) 390, 1828, 1870
BseLI CCNNNNNNNGG 1 cut(s) 1264
BseMI GCAATG 4 cut(s) 226, 486, 797, 815
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 5 cut(s) 35, 184, 678, 1980, 2005
BseXI GCAGC 7 cut(s) 106, 255, 319, 478, 646, 1640, 1663
BseYI CCCAGC 2 cut(s) 1426, 1895
Bsh1236I CGCG 2 cut(s) 44, 1906
Bsh1285I CGRYCG 2 cut(s) 1103, 1107
BshFI GGCC 9 cut(s) 14, 485, 772, 815, 906, 1337, 1418, 1758, 1869
BshNI GGYRCC 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 1506
BsiEI CGRYCG 2 cut(s) 1103, 1107
BsiHKAI GWGCWC 1 cut(s) 1747
BsiSI CCGG 2 cut(s) 481, 1650
BslFI GGGAC 5 cut(s) 684, 901, 920, 1081, 1866
BslI CCNNNNNNNGG 1 cut(s) 1264
BsmAI GTCTC 5 cut(s) 63, 285, 513, 834, 1195
BsmBI CGTCTC 1 cut(s) 63
BsmFI GGGAC 5 cut(s) 684, 901, 920, 1081, 1866
BsmI GAATGC 3 cut(s) 370, 650, 756
BsnI GGCC 9 cut(s) 14, 485, 772, 815, 906, 1337, 1418, 1758, 1869
Bso31I GGTCTC 1 cut(s) 513
Bsp119I TTCGAA 2 cut(s) 228, 1552
Bsp1286I GDGCHC 1 cut(s) 1747
Bsp143I GATC 6 cut(s) 345, 466, 1104, 1422, 1503, 1738
BspACI CCGC 8 cut(s) 44, 108, 266, 272, 340, 357, 1412, 1904
BspANI GGCC 9 cut(s) 14, 485, 772, 815, 906, 1337, 1418, 1758, 1869
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 1506
BspFNI CGCG 2 cut(s) 44, 1906
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 4 cut(s) 13, 264, 289, 889
BspMAI CTGCAG 1 cut(s) 496
BspPI GGATC 3 cut(s) 340, 461, 1417
BspQI GCTCTTC 1 cut(s) 42
BspT104I TTCGAA 2 cut(s) 228, 1552
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 513
BsrDI GCAATG 4 cut(s) 226, 486, 797, 815
BsrI ACTGG 5 cut(s) 35, 184, 678, 1980, 2005
BssECI CCNNGG 3 cut(s) 1444, 1767, 2020
BssMI GATC 6 cut(s) 345, 466, 1104, 1422, 1503, 1738
BssNAI GTATAC 2 cut(s) 1568, 1780
Bst1107I GTATAC 2 cut(s) 1568, 1780
Bst2UI CCWGG 6 cut(s) 260, 285, 1445, 1716, 1760, 2022
Bst4CI ACNGT 6 cut(s) 1074, 1189, 1453, 1576, 1687, 1804
Bst6I CTCTTC 2 cut(s) 42, 255
BstAPI GCANNNNNTGC 2 cut(s) 365, 656
BstBI TTCGAA 2 cut(s) 228, 1552
BstC8I GCNNGC 5 cut(s) 648, 1339, 1587, 1681, 1901
BstDEI CTNAG 3 cut(s) 90, 463, 472
BstEII GGTNACC 1 cut(s) 1718
BstF5I GGATG 3 cut(s) 390, 1828, 1870
BstFNI CGCG 2 cut(s) 44, 1906
BstHHI GCGC 3 cut(s) 44, 99, 1242
BstKTI GATC 6 cut(s) 348, 469, 1107, 1425, 1506, 1741
BstMAI GTCTC 5 cut(s) 63, 285, 513, 834, 1195
BstMBI GATC 6 cut(s) 345, 466, 1104, 1422, 1503, 1738
BstMCI CGRYCG 2 cut(s) 1103, 1107
BstMWI GCNNNNNNNGC 7 cut(s) 271, 329, 365, 491, 643, 656, 1064
BstNI CCWGG 6 cut(s) 260, 285, 1445, 1716, 1760, 2022
BstPI GGTNACC 1 cut(s) 1718
BstSCI CCNGG 7 cut(s) 258, 283, 480, 1443, 1714, 1758, 2020
BstSFI CTRYAG 3 cut(s) 492, 944, 1572
BstUI CGCG 2 cut(s) 44, 1906
BstV1I GCAGC 7 cut(s) 106, 255, 319, 478, 646, 1640, 1663
BstV2I GAAGAC 3 cut(s) 390, 686, 1246
BstX2I RGATCY 3 cut(s) 345, 466, 1422
BstYI RGATCY 3 cut(s) 345, 466, 1422
BstZ17I GTATAC 2 cut(s) 1568, 1780
Bsu15I ATCGAT 1 cut(s) 1506
BsuI GTATCC 2 cut(s) 528, 880
BsuRI GGCC 9 cut(s) 14, 485, 772, 815, 906, 1337, 1418, 1758, 1869
BsuTUI ATCGAT 1 cut(s) 1506
BtsCI GGATG 3 cut(s) 390, 1828, 1870
BtsI GCAGTG 2 cut(s) 501, 1638
BtsIMutI CAGTG 5 cut(s) 501, 1194, 1638, 1683, 1973
Cac8I GCNNGC 5 cut(s) 648, 1339, 1587, 1681, 1901
CaiI CAGNNNCTG 3 cut(s) 500, 952, 1861
CciI TCATGA 1 cut(s) 427
CfoI GCGC 3 cut(s) 44, 99, 1242
Cfr13I GGNCC 4 cut(s) 12, 483, 813, 888
ClaI ATCGAT 1 cut(s) 1506
CseI GACGC 2 cut(s) 80, 791
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 1217
CviAII CATG 8 cut(s) 360, 428, 638, 768, 1157, 1279, 1501, 1871
CviQI GTAC 1 cut(s) 1217
DdeI CTNAG 3 cut(s) 90, 463, 472
DpnI GATC 6 cut(s) 347, 468, 1106, 1424, 1505, 1740
DpnII GATC 6 cut(s) 345, 466, 1104, 1422, 1503, 1738
DriI GACNNNNNGTC 1 cut(s) 1250
EaeI YGGCCR 2 cut(s) 1756, 1867
Eam1104I CTCTTC 2 cut(s) 42, 255
Eam1105I GACNNNNNGTC 1 cut(s) 1250
EarI CTCTTC 2 cut(s) 42, 255
Eco147I AGGCCT 1 cut(s) 1337
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 1 cut(s) 888
Eco57I CTGAAG 3 cut(s) 22, 1550, 1755
Eco91I GGTNACC 1 cut(s) 1718
EcoO65I GGTNACC 1 cut(s) 1718
EcoRI GAATTC 1 cut(s) 1876
EcoRII CCWGG 6 cut(s) 258, 283, 1443, 1714, 1758, 2020
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 8 cut(s) 363, 431, 641, 771, 1160, 1282, 1504, 1874
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 5 cut(s) 684, 901, 920, 1081, 1866
FatI CATG 8 cut(s) 359, 427, 637, 767, 1156, 1278, 1500, 1870
FauNDI CATATG 2 cut(s) 1591, 1817
FblI GTMKAC 2 cut(s) 1567, 1779
FokI GGATG 3 cut(s) 397, 1835, 1877
FspBI CTAG 5 cut(s) 311, 540, 1259, 1478, 1790
GlaI GCGC 3 cut(s) 43, 98, 1241
GsaI CCCAGC 2 cut(s) 1430, 1899
GsuI CTGGAG 2 cut(s) 306, 623
HaeIII GGCC 9 cut(s) 14, 485, 772, 815, 906, 1337, 1418, 1758, 1869
HapII CCGG 2 cut(s) 481, 1650
HgaI GACGC 2 cut(s) 80, 791
HhaI GCGC 3 cut(s) 44, 99, 1242
Hin1II CATG 8 cut(s) 363, 431, 641, 771, 1160, 1282, 1504, 1874
Hin6I GCGC 3 cut(s) 42, 97, 1240
HinP1I GCGC 3 cut(s) 42, 97, 1240
HindIII AAGCTT 1 cut(s) 232
HpaII CCGG 2 cut(s) 481, 1650
HphI GGTGA 3 cut(s) 1730, 1783, 1884
Hpy166II GTNNAC 4 cut(s) 478, 1568, 1710, 1780
Hpy188I TCNGA 6 cut(s) 243, 967, 1200, 1225, 1530, 1833
Hpy8I GTNNAC 4 cut(s) 478, 1568, 1710, 1780
Hpy99I CGWCG 4 cut(s) 20, 23, 26, 29
HpyAV CCTTC 5 cut(s) 235, 312, 572, 1174, 1796
HpyCH4III ACNGT 6 cut(s) 1074, 1189, 1453, 1576, 1687, 1804
HpyCH4IV ACGT 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 7 cut(s) 271, 329, 365, 491, 643, 656, 1064
HpyF3I CTNAG 3 cut(s) 90, 463, 472
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 8 cut(s) 363, 431, 641, 771, 1160, 1282, 1504, 1874
HspAI GCGC 3 cut(s) 42, 97, 1240
Kzo9I GATC 6 cut(s) 345, 466, 1104, 1422, 1503, 1738
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 7 cut(s) 106, 255, 319, 478, 646, 1640, 1663
LweI GCATC 4 cut(s) 108, 971, 1498, 1848
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 5 cut(s) 311, 540, 1259, 1478, 1790
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 4 cut(s) 761, 1151, 1594, 1718
MalI GATC 6 cut(s) 347, 468, 1106, 1424, 1505, 1740
MboI GATC 6 cut(s) 345, 466, 1104, 1422, 1503, 1738
MflI RGATCY 3 cut(s) 345, 466, 1422
MhlI GDGCHC 1 cut(s) 1747
MlsI TGGCCA 2 cut(s) 1758, 1869
MluCI AATT 9 cut(s) 1163, 1171, 1329, 1367, 1554, 1700, 1725, 1752, 1876
MluNI TGGCCA 2 cut(s) 1758, 1869
MlyI GAGTC 4 cut(s) 758, 1001, 1197, 1705
MmeI TCCRAC 3 cut(s) 1290, 1821, 1863
Mox20I TGGCCA 2 cut(s) 1758, 1869
MroXI GAANNNNTTC 1 cut(s) 420
MscI TGGCCA 2 cut(s) 1758, 1869
MseI TTAA 9 cut(s) 318, 620, 912, 972, 1076, 1332, 1365, 1664, 1670
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 2 cut(s) 1758, 1869
MspA1I CMGCKG 3 cut(s) 268, 1412, 1676
MspI CCGG 2 cut(s) 481, 1650
MspR9I CCNGG 7 cut(s) 260, 285, 482, 1445, 1716, 1760, 2022
Mva1269I GAATGC 3 cut(s) 370, 650, 756
MvaI CCWGG 6 cut(s) 260, 285, 1445, 1716, 1760, 2022
MvnI CGCG 2 cut(s) 44, 1906
MwoI GCNNNNNNNGC 7 cut(s) 271, 329, 365, 491, 643, 656, 1064
NciI CCSGG 1 cut(s) 482
NdeI CATATG 2 cut(s) 1591, 1817
NdeII GATC 6 cut(s) 345, 466, 1104, 1422, 1503, 1738
NlaIII CATG 8 cut(s) 363, 431, 641, 771, 1160, 1282, 1504, 1874
NlaIV GGNNCC 4 cut(s) 13, 264, 289, 889
NmuCI GTSAC 2 cut(s) 761, 1718
NspV TTCGAA 2 cut(s) 228, 1552
PagI TCATGA 1 cut(s) 427
PceI AGGCCT 1 cut(s) 1337
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 3 cut(s) 370, 650, 756
PdmI GAANNNNTTC 1 cut(s) 420
PflFI GACNNNGTC 1 cut(s) 932
PfoI TCCNGGA 1 cut(s) 283
Ple19I CGATCG 1 cut(s) 1107
PleI GAGTC 4 cut(s) 758, 1000, 1197, 1705
PpsI GAGTC 4 cut(s) 758, 1000, 1197, 1705
Psp6I CCWGG 6 cut(s) 258, 283, 1443, 1714, 1758, 2020
PspEI GGTNACC 1 cut(s) 1718
PspFI CCCAGC 2 cut(s) 1426, 1895
PspGI CCWGG 6 cut(s) 258, 283, 1443, 1714, 1758, 2020
PspN4I GGNNCC 4 cut(s) 13, 264, 289, 889
PspPI GGNCC 4 cut(s) 12, 483, 813, 888
PstI CTGCAG 1 cut(s) 496
PstNI CAGNNNCTG 3 cut(s) 500, 952, 1861
PsuI RGATCY 3 cut(s) 345, 466, 1422
PsyI GACNNNGTC 1 cut(s) 932
PvuI CGATCG 1 cut(s) 1107
PvuII CAGCTG 1 cut(s) 1676
RsaI GTAC 1 cut(s) 1218
RsaNI GTAC 1 cut(s) 1217
RseI CAYNNNNRTG 1 cut(s) 900
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 9 cut(s) 318, 620, 912, 972, 1076, 1332, 1365, 1664, 1670
Sau3AI GATC 6 cut(s) 345, 466, 1104, 1422, 1503, 1738
Sau96I GGNCC 4 cut(s) 12, 483, 813, 888
SchI GAGTC 4 cut(s) 758, 1001, 1197, 1705
ScrFI CCNGG 7 cut(s) 260, 285, 482, 1445, 1716, 1760, 2022
SduI GDGCHC 1 cut(s) 1747
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 4 cut(s) 108, 971, 1498, 1848
SfcI CTRYAG 3 cut(s) 492, 944, 1572
SfuI TTCGAA 2 cut(s) 228, 1552
SinI GGWCC 1 cut(s) 888
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 2 cut(s) 874, 1014
SmoI CTYRAG 2 cut(s) 874, 1014
Sse9I AATT 9 cut(s) 1163, 1171, 1329, 1367, 1554, 1700, 1725, 1752, 1876
SseBI AGGCCT 1 cut(s) 1337
SsiI CCGC 8 cut(s) 44, 108, 266, 272, 340, 357, 1412, 1904
SspI AATATT 1 cut(s) 1692
SspMI CTAG 5 cut(s) 311, 540, 1259, 1478, 1790
StuI AGGCCT 1 cut(s) 1337
StyD4I CCNGG 7 cut(s) 258, 283, 480, 1443, 1714, 1758, 2020
TaaI ACNGT 6 cut(s) 1074, 1189, 1453, 1576, 1687, 1804
TaiI ACGT 1 cut(s) 318
TaqI TCGA 6 cut(s) 63, 228, 517, 1107, 1506, 1552
TaqII GACCGA 1 cut(s) 1117
TasI AATT 9 cut(s) 1163, 1171, 1329, 1367, 1554, 1700, 1725, 1752, 1876
TatI WGTACW 1 cut(s) 1216
TauI GCSGC 4 cut(s) 268, 274, 359, 1906
Tru1I TTAA 9 cut(s) 318, 620, 912, 972, 1076, 1332, 1365, 1664, 1670
Tru9I TTAA 9 cut(s) 318, 620, 912, 972, 1076, 1332, 1365, 1664, 1670
TscAI CASTG 5 cut(s) 501, 1194, 1638, 1690, 1980
TseFI GTSAC 2 cut(s) 761, 1718
TseI GCWGC 7 cut(s) 94, 268, 332, 491, 634, 1628, 1676
Tsp45I GTSAC 2 cut(s) 761, 1718
TspDTI ATGAA 9 cut(s) 150, 226, 416, 444, 678, 786, 884, 1173, 1295
TspRI CASTG 5 cut(s) 501, 1194, 1638, 1690, 1980
Tth111I GACNNNGTC 1 cut(s) 932
VpaK11BI GGWCC 1 cut(s) 888
XapI RAATTY 2 cut(s) 1367, 1876
XbaI TCTAGA 1 cut(s) 310
XmiI GTMKAC 2 cut(s) 1567, 1779
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 5 cut(s) 311, 540, 1259, 1478, 1790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.