Rorug04G0219800

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007739
Physical Location & Seq
Reverse (-)
37926123 .. 37937276
11154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0219800.1

Sequence Viewer

Length: 1233 bp
ATGACGAAGTTAAGGAAGCTGAACCGAACTGCGGCTCATCGCAAATCTATGCTGAGGACGATGGTATCGCAATTCGTGAAGCACGGGTGCATTGAAACCACTGTTGCCAAGGCAAAAGAGTTTGCCATTGCTTTTTGCACTCTGATTGGTTTGGTTGCTTTCCACGTGGCTCTATTTGCTTGCTCAAGAAGGATCGAGAGAGCCAGACAGGTCAAGAAGGATCGAGAGCGTGCAGGGGTATTGTTCGGTTTTGCTGTGAGAAGGAGGAGGATCTGCGTTTTGGATAACTCTGTCGGTTTCGATTTTGTAGGGGTATTGTTTGTGCTTCAGTTTATTTCAGTGATTGATTGGAGGAGGTTCGAGGTTGCTGATAACTTGCTTCATGAAGCCACTAGGAATCTAGAAAGTTTGATATTTTTCCCCCAGACCCTTAGAAGCAAGATATTCAAGGGAGGCTTGACAAAGAAGTTCTTTGCTTTGCTCAACTCACCAGCATTGCTGTGCCACTGCTTTCTCTTTGGCTTTTTACCTGATTGCCCAGACAGGTGTACGTACGAAGAACGATCGAGACTTCGAGAGAGTTCAAGTATATATGACAAATCTGCTCTGGCTTTTCTTCAAGAAAGGTCTGCCCATAAAGATTTACTTCGTTCTTTTCTTAAAGCCTTAGTCTTTTTCATGTTGGTCATTGCGATTTTGACTTCTATACATCAATTTGGAACCACTGCTTACCAAGAAAGGATTAGACAAACTTCACTTGCGGGAAGCTCAACTTCAAGTTCGGCACTTGGATGTAATATTATACATGTTGAAGGAGCCAACATCTCCACTGTTTTTCCACTCCGAGAAGCCTCTCCATCAACATCACGATCACTCAAAAGCTTGAGGTTCGAAAATTTGGTGAGATCGCAAAACAACCTATGTCAGAAGATGACTGCATTAATCTTAGCAGAAGCAATAATCAAAAACGAATATACATCACTACTTGGAGATGAGGCAAAGGGTTGGTTGGATACCACATATCTGTCCCAATCTGGCAATTTTCGTATCTCAAGAAGAAATAAGGGAACAACATTTGTTCTGCAAGAGAGAGCTGAACTTAGGCAAAGACTATTGTCAATCATGTCCACTGGTACAAGAGTTAAAGAGGTAATCGAGGAGTTTATTTCCTTATATCAAAGTATAGGTGAATTGGAACTCCAAGAAGGGGAATGGGAAATGGTTTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

410

Amino Acids

46.63

Weight (kDa)

9.73

Isoelectric Point (pI)

57.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 326 - 361 5.9e-07 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 32, 761
AclWI GGATC 3 cut(s) 200, 228, 278
AcsI RAATTY 1 cut(s) 895
AcuI CTGAAG 1 cut(s) 311
AcvI CACGTG 1 cut(s) 166
AfaI GTAC 3 cut(s) 550, 554, 1135
AfiI CCNNNNNNNGG 2 cut(s) 31, 1207
AflIII ACRYGT 1 cut(s) 805
AgsI TTSAA 6 cut(s) 95, 448, 585, 620, 777, 812
AluBI AGCT 4 cut(s) 19, 768, 882, 1094
AluI AGCT 4 cut(s) 19, 768, 882, 1094
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 3 cut(s) 200, 228, 278
ApoI RAATTY 1 cut(s) 895
AseI ATTAAT 1 cut(s) 941
AsuHPI GGTGA 3 cut(s) 480, 913, 1199
AsuII TTCGAA 1 cut(s) 891
BaeI ACNNNNGTAYC 4 cut(s) 48, 81, 1125, 1158
BbrPI CACGTG 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 55, 865
BciVI GTATCC 1 cut(s) 1006
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 2 cut(s) 393, 401
BfuI GTATCC 1 cut(s) 1006
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 721, 817
BoxI GACNNNNGTC 1 cut(s) 1114
Bpu10I CCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 891
BpuEI CTTGAG 3 cut(s) 169, 904, 1036
BsaAI YACGTR 2 cut(s) 166, 552
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 1207
Bse1I ACTGG 1 cut(s) 1135
Bse3DI GCAATG 3 cut(s) 126, 494, 687
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 797
BseLI CCNNNNNNNGG 2 cut(s) 31, 1207
BseMI GCAATG 3 cut(s) 126, 494, 687
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 1135
BseRI GAGGAG 3 cut(s) 280, 367, 1172
BsgI GTGCAG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 566
BsiEI CGRYCG 1 cut(s) 566
BsiWI CGTACG 1 cut(s) 552
BslFI GGGAC 1 cut(s) 1012
BslI CCNNNNNNNGG 2 cut(s) 31, 1207
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 1012
Bsp119I TTCGAA 1 cut(s) 891
Bsp143I GATC 6 cut(s) 192, 220, 270, 563, 869, 905
BspACI CCGC 2 cut(s) 32, 761
BspCNI CTCAG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 721, 817
BspPI GGATC 3 cut(s) 200, 228, 278
BspT104I TTCGAA 1 cut(s) 891
BsrDI GCAATG 3 cut(s) 126, 494, 687
BsrI ACTGG 1 cut(s) 1135
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 6 cut(s) 192, 220, 270, 563, 869, 905
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 103, 832
BstBAI YACGTR 2 cut(s) 166, 552
BstBI TTCGAA 1 cut(s) 891
BstC8I GCNNGC 2 cut(s) 181, 231
BstDEI CTNAG 5 cut(s) 53, 431, 667, 946, 1100
BstF5I GGATG 1 cut(s) 797
BstKTI GATC 6 cut(s) 195, 223, 273, 566, 872, 908
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 6 cut(s) 192, 220, 270, 563, 869, 905
BstMCI CGRYCG 1 cut(s) 566
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 809
BstPAI GACNNNNGTC 1 cut(s) 1114
BstSNI TACGTA 1 cut(s) 552
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuI GTATCC 1 cut(s) 1006
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 797
BtsI GCAGTG 2 cut(s) 505, 723
BtsIMutI CAGTG 6 cut(s) 99, 345, 505, 723, 828, 1128
Cac8I GCNNGC 2 cut(s) 181, 231
CciI TCATGA 1 cut(s) 382
Csp6I GTAC 3 cut(s) 549, 553, 1134
CviAII CATG 4 cut(s) 383, 679, 806, 1123
CviQI GTAC 3 cut(s) 549, 553, 1134
DdeI CTNAG 5 cut(s) 53, 431, 667, 946, 1100
DpnI GATC 6 cut(s) 194, 222, 272, 565, 871, 907
DpnII GATC 6 cut(s) 192, 220, 270, 563, 869, 905
Eco105I TACGTA 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 311
Eco72I CACGTG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 4 cut(s) 386, 682, 809, 1126
FalI AAGNNNNNCTT 8 cut(s) 440, 472, 455, 487, 630, 662, 757, 789
FaqI GGGAC 1 cut(s) 1012
FatI CATG 4 cut(s) 382, 678, 805, 1122
FauI CCCGC 1 cut(s) 754
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 804
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 393, 401
GluI GCNGC 1 cut(s) 33
Hin1II CATG 4 cut(s) 386, 682, 809, 1126
HindIII AAGCTT 1 cut(s) 880
HinfI GANTC 1 cut(s) 397
HphI GGTGA 3 cut(s) 480, 913, 1199
Hpy166II GTNNAC 2 cut(s) 549, 1128
Hpy188I TCNGA 3 cut(s) 144, 845, 927
Hpy8I GTNNAC 2 cut(s) 549, 1128
HpyAV CCTTC 5 cut(s) 183, 211, 255, 806, 1199
HpyCH4III ACNGT 2 cut(s) 103, 832
HpyCH4IV ACGT 2 cut(s) 165, 551
HpyCH4V TGCA 5 cut(s) 90, 138, 233, 938, 1084
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 5 cut(s) 53, 431, 667, 946, 1100
HpySE526I ACGT 2 cut(s) 165, 551
Hsp92II CATG 4 cut(s) 386, 682, 809, 1126
Kzo9I GATC 6 cut(s) 192, 220, 270, 563, 869, 905
LmnI GCTCC 1 cut(s) 815
MaeI CTAG 2 cut(s) 393, 401
MaeII ACGT 2 cut(s) 165, 551
MalI GATC 6 cut(s) 194, 222, 272, 565, 871, 907
MboI GATC 6 cut(s) 192, 220, 270, 563, 869, 905
MboII GAAGA 4 cut(s) 569, 608, 940, 1068
MflI RGATCY 1 cut(s) 270
MluCI AATT 5 cut(s) 71, 713, 895, 1039, 1190
MmeI TCCRAC 1 cut(s) 990
MseI TTAA 4 cut(s) 11, 660, 941, 1143
MslI CAYNNNNRTG 2 cut(s) 499, 790
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 6 cut(s) 192, 220, 270, 563, 869, 905
NlaIII CATG 4 cut(s) 386, 682, 809, 1126
NlaIV GGNNCC 2 cut(s) 721, 817
NspI RCATGY 1 cut(s) 809
NspV TTCGAA 1 cut(s) 891
PagI TCATGA 1 cut(s) 382
PciI ACATGT 1 cut(s) 805
PfeI GAWTC 1 cut(s) 397
Pfl23II CGTACG 1 cut(s) 552
PkrI GCNGC 1 cut(s) 34
Ple19I CGATCG 1 cut(s) 566
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
Ppu21I YACGTR 2 cut(s) 166, 552
PscI ACATGT 1 cut(s) 805
PshAI GACNNNNGTC 1 cut(s) 1114
PshBI ATTAAT 1 cut(s) 941
PspCI CACGTG 1 cut(s) 166
PspLI CGTACG 1 cut(s) 552
PspN4I GGNNCC 2 cut(s) 721, 817
PsuI RGATCY 1 cut(s) 270
PvuI CGATCG 1 cut(s) 566
RsaI GTAC 3 cut(s) 550, 554, 1135
RsaNI GTAC 3 cut(s) 549, 553, 1134
RseI CAYNNNNRTG 2 cut(s) 499, 790
SaqAI TTAA 4 cut(s) 11, 660, 941, 1143
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 6 cut(s) 192, 220, 270, 563, 869, 905
SfuI TTCGAA 1 cut(s) 891
SmiMI CAYNNNNRTG 2 cut(s) 499, 790
SmlI CTYRAG 3 cut(s) 184, 883, 1051
SmoI CTYRAG 3 cut(s) 184, 883, 1051
SnaBI TACGTA 1 cut(s) 552
Sse9I AATT 5 cut(s) 71, 713, 895, 1039, 1190
SsiI CCGC 2 cut(s) 32, 761
SspI AATATT 1 cut(s) 799
SspMI CTAG 2 cut(s) 393, 401
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 103, 832
TaiI ACGT 2 cut(s) 168, 554
TaqI TCGA 8 cut(s) 195, 223, 300, 360, 566, 574, 891, 1155
TasI AATT 5 cut(s) 71, 713, 895, 1039, 1190
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 4 cut(s) 11, 660, 941, 1143
Tru9I TTAA 4 cut(s) 11, 660, 941, 1143
TscAI CASTG 6 cut(s) 106, 345, 512, 730, 835, 1135
TspDTI ATGAA 3 cut(s) 371, 399, 667
TspRI CASTG 6 cut(s) 106, 345, 512, 730, 835, 1135
VspI ATTAAT 1 cut(s) 941
XapI RAATTY 1 cut(s) 895
XbaI TCTAGA 1 cut(s) 400
XceI RCATGY 1 cut(s) 809
XspI CTAG 2 cut(s) 393, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.