RchiOBHm_Chr4g0427901

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007739
Physical Location & Seq
Forward (+)
53043646 .. 53051995
8350 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39681

Sequence Viewer

Length: 2235 bp
ATGGATTTTGGGGCCGACGACGACTGGAATTTCAGCGCGGAAGAGCTTGATTCCCTCGAGAGAGACGCTTTCCAGAAACTCTCTCAGCAACGCATCAACTCCGCTTCCACTTGTTCCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTTCATTCAATCGCCACCACGCACACCAGTCTTTACCCACCACCACCACCACCAACAGCAATGCCTTCGAAAGCTTCATTCCGAATTCATTTCCTAACCAGGTGCCGCCGCCTTTGTCTCCTGGAGCCAGAGTATTACCTTCTTCTCTAGACGTTAAAGTAAACCCTGTTGAACGGAAGCTCACTGTCAAATTTTTTCTTCATGCTACTGGAAACATTGCTGCAAAATTTTCCTATGACCAGGTGTTGGTAGCTGCTTTCCGCAAGATCCCCAAAGCCACATGGAATGCAAAAGAAAGGTTATGGATGTTCCCTGTGTCTTCTTTGTCATCGGCAGAAAAAGTTCTTCATGAAGTATCAGGAGTCAATGTTGAGATAGAGAACTTAGATCCCTTAGTCCACCGGGCCATTGCTGCTGTGTCTGTTGTTCCAGATATTCGAGACCTGTATGACAGGATACCTAGCTTTATCGAATCAAAGCTCTTGGGATTTCAGCGAGAAGGCGTAAGGTTTATCTTGCAGCATGGAGGGCGTGCATTCCTTGCTGATGAAATGGGACTGGGGAAGACTTTGCAGGCTATTGCTGTGGCTTCCTGCATTCGTGACTCATGGCCTGTTCTTATACTCACACCATCTTCATTGCGTCTGCAATGGGCCTCTATGATTCAACAATGGATGAACATTCCTCCATCAGATATTAGTGTTGTTTTGTCTCAATGTGGGGGTTCAAACAGAGCTGGATATACATTAGTATCCTCAAGTTCCAAAGGGACCATTCATCTTGATGGCCTATTTAACATAATCTCTTATGACATAGTCCCTAAACTACAGAATCTGCTGATGGCTTCAGATTTTAAGATTGTGATTGCAGATGAGTCGCACTTTTTGAAAAATGCTCAAGCAAAAAGGACAACTGCTTCCCTGCCTGTCATCAAGAAGGCTCAATATGCAATACTGTTAAGTGGAACTCCTGCATTGTCCCGACCGATCGAACTATTTACGCAGCTGGAAGCCTTGTATCCTGATGTATACAAAAATGTTCATGAATATGGCAAACGATATTGCAAGGGTGGAACATTTGGAATGTATCAAGGTGCAAGTAACCATGAAGAATTGCATAATTTGTTGAAGGCAACGGTGATGATTCGGAGACTCAAAAATGATGTACTCTCTGAACTTCCTGTGAAGCGCAGACAACAGGTCTTCCTAGATTTGGCTGAAAAGGACATGAAACAAATCAATGCTTTATTTCGTGAGTTGGAGGTGGTAAAGCTGAAAATTAAGGCCTGCAAATCAAAAGAAGAAGTTGATTCACTTAAATTTATGGAGAAGAATCTTATCAATAAGATTTATACTGATTCAGCGGAGGCCAAGATCCCAGCAGTTCTGGATTACCTGGGAACTGTCATCGAGGCTGGTTGCAAGTTTCTAGTATTTGCACATCATCAATCCATGATCGATGCAATATATCAGTTTCTTCTGAAGAAGAAAGTGAGTTGTATTCGAATTGATGGCAGTATACCTACAGTAGAGAGGCAAGCATATGTTACGCAGTTTCAAGAAAAAGATTCTGTCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTGGGATTAACTTTAACAGCTGCAAGCACTGTAATATTTGCAGAATTGTCGTGGACTCCTGGTGACCTAATTCAAGCTGAAGATCGTGCTCACAGAATTGGCCAGGTGTCCTCGGTCAATGTATACTACCTTCTAGCGAACGACACAGTTGATGACATCATATGGGATGTTGTTCAGAGCAAGTTGGAAAATCTGGGACAGATGCTGGATGGCCATGAGAATTCGTTGGAAGTTTCAGCCAGCCAGCCGCGAAATAGCCCTGCAAAGCTGAAAAATAGCCCTGCCAAGCCGAAATATAGCCCTGCCAAGCCGAAATATAGCCCTGCAAAGCAGAAAACACTGGATTCTTTCTTGAAAGTTTCAACCAACCAGTCAAACATCAGCCCAGGAAAGCAAAAAACACTTGATTCCTTCTTGAAGCGTTGCAACAACAGTGAAGACCATGAAATTGAGCCCAAATTTAAATACCCAAGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

744

Amino Acids

82.73

Weight (kDa)

8.92

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 213 - 489 4.8e-34 SNF2-related domain
Helicase_C PF00271 511 - 619 3.4e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 394
AccI GTMKAC 3 cut(s) 1176, 1666, 1878
AccII CGCG 2 cut(s) 38, 2005
AciI CCGC 7 cut(s) 38, 102, 254, 257, 409, 1511, 2003
AclWI GGATC 3 cut(s) 409, 530, 1516
AcoI YGGCCR 2 cut(s) 1855, 1966
AcsI RAATTY 7 cut(s) 28, 232, 338, 374, 1466, 1975, 2213
AcuI CTGAAG 3 cut(s) 978, 1649, 1854
AfaI GTAC 1 cut(s) 1314
AfiI CCNNNNNNNGG 2 cut(s) 394, 1360
AhdI GACNNNNNGTC 1 cut(s) 1346
AjnI CCWGG 7 cut(s) 246, 268, 387, 1542, 1813, 1857, 2140
Alw21I GWGCWC 1 cut(s) 1846
Alw26I GTCTC 5 cut(s) 57, 270, 582, 864, 1291
AlwI GGATC 3 cut(s) 409, 530, 1516
AlwNI CAGNNNCTG 2 cut(s) 982, 1960
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 9 cut(s) 12, 552, 758, 801, 934, 1431, 1515, 1855, 1966
ApeKI GCWGC 7 cut(s) 368, 401, 560, 667, 1150, 1727, 1775
ApoI RAATTY 7 cut(s) 28, 232, 338, 374, 1466, 1975, 2213
Asp700I GAANNNNTTC 1 cut(s) 489
AspLEI GCGC 2 cut(s) 38, 1338
AspS9I GGNCC 4 cut(s) 12, 552, 801, 918
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 2 cut(s) 1297, 1829
AsuII TTCGAA 2 cut(s) 216, 1651
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 918
BaeI ACNNNNGTAYC 2 cut(s) 882, 915
BalI TGGCCA 2 cut(s) 1857, 1968
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 2211
BarI GAAGNNNNNNTAC 2 cut(s) 1869, 1901
BbsI GAAGAC 4 cut(s) 459, 719, 1342, 2199
Bbv12I GWGCWC 1 cut(s) 1846
BbvI GCAGC 7 cut(s) 355, 388, 547, 679, 1162, 1739, 1762
BccI CCATC 6 cut(s) 787, 844, 926, 982, 1652, 1958
BcgI CGANNNNNNTGC 6 cut(s) 196, 230, 1005, 1039, 1785, 1819
BciT130I CCWGG 7 cut(s) 248, 270, 389, 1544, 1815, 1859, 2142
BciVI GTATCC 3 cut(s) 597, 910, 1176
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 5 cut(s) 57, 270, 582, 864, 1291
BfaI CTAG 5 cut(s) 296, 609, 1355, 1577, 1889
BfmI CTRYAG 2 cut(s) 974, 1671
BfuI GTATCC 3 cut(s) 597, 910, 1176
Bme1390I CCNGG 8 cut(s) 248, 270, 389, 551, 1544, 1815, 1859, 2142
Bme18I GGWCC 1 cut(s) 918
BmeRI GACNNNNNGTC 1 cut(s) 1346
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 4 cut(s) 12, 552, 801, 918
BmiI GGNNCC 4 cut(s) 13, 252, 274, 919
BmrFI CCNGG 8 cut(s) 248, 270, 389, 551, 1544, 1815, 1859, 2142
BmrI ACTGGG 1 cut(s) 716
BmsI GCATC 3 cut(s) 102, 1597, 1947
BmuI ACTGGG 1 cut(s) 716
BpiI GAAGAC 4 cut(s) 459, 719, 1342, 2199
BpmI CTGGAG 2 cut(s) 291, 1770
Bpu14I TTCGAA 2 cut(s) 216, 1651
BpuEI CTTGAG 2 cut(s) 889, 1029
BpuMI CCSGG 1 cut(s) 551
Bsa29I ATCGAT 1 cut(s) 1605
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 4 cut(s) 1543, 1866, 2140, 2225
BsaXI ACNNNNNCTCC 4 cut(s) 264, 294, 501, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 1360
Bse1I ACTGG 6 cut(s) 29, 175, 361, 711, 2100, 2125
Bse3DI GCAATG 5 cut(s) 214, 363, 555, 785, 803
BseBI CCWGG 7 cut(s) 248, 270, 389, 1544, 1815, 1859, 2142
BseCI ATCGAT 1 cut(s) 1605
BseDI CCNNGG 4 cut(s) 1543, 1866, 2140, 2225
BseGI GGATG 4 cut(s) 459, 828, 1927, 1969
BseLI CCNNNNNNNGG 2 cut(s) 394, 1360
BseMI GCAATG 5 cut(s) 214, 363, 555, 785, 803
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 6 cut(s) 29, 175, 361, 711, 2100, 2125
BseXI GCAGC 7 cut(s) 355, 388, 547, 679, 1162, 1739, 1762
BseYI CCCAGC 1 cut(s) 1525
Bsh1236I CGCG 2 cut(s) 38, 2005
Bsh1285I CGRYCG 2 cut(s) 1133, 1137
BshFI GGCC 9 cut(s) 14, 554, 760, 803, 936, 1433, 1517, 1857, 1968
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 1605
BsiEI CGRYCG 2 cut(s) 1133, 1137
BsiHKAI GWGCWC 1 cut(s) 1846
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 550
BslFI GGGAC 5 cut(s) 717, 931, 950, 1111, 1965
BslI CCNNNNNNNGG 2 cut(s) 394, 1360
BsmAI GTCTC 5 cut(s) 57, 270, 582, 864, 1291
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 5 cut(s) 717, 931, 950, 1111, 1965
BsmI GAATGC 3 cut(s) 439, 683, 744
BsnI GGCC 9 cut(s) 14, 554, 760, 803, 936, 1433, 1517, 1857, 1968
Bso31I GGTCTC 1 cut(s) 582
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 2 cut(s) 216, 1651
Bsp1286I GDGCHC 2 cut(s) 1846, 2211
Bsp143I GATC 6 cut(s) 414, 535, 1134, 1521, 1602, 1837
BspACI CCGC 7 cut(s) 38, 102, 254, 257, 409, 1511, 2003
BspANI GGCC 9 cut(s) 14, 554, 760, 803, 936, 1433, 1517, 1857, 1968
BspCNI CTCAG 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 1605
BspFNI CGCG 2 cut(s) 38, 2005
BspHI TCATGA 2 cut(s) 496, 1189
BspLI GGNNCC 4 cut(s) 13, 252, 274, 919
BspPI GGATC 3 cut(s) 409, 530, 1516
BspQI GCTCTTC 1 cut(s) 36
BspT104I TTCGAA 2 cut(s) 216, 1651
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 582
BsrDI GCAATG 5 cut(s) 214, 363, 555, 785, 803
BsrI ACTGG 6 cut(s) 29, 175, 361, 711, 2100, 2125
BssECI CCNNGG 4 cut(s) 1543, 1866, 2140, 2225
BssMI GATC 6 cut(s) 414, 535, 1134, 1521, 1602, 1837
BssNAI GTATAC 3 cut(s) 1177, 1667, 1879
BssT1I CCWWGG 1 cut(s) 2225
Bst1107I GTATAC 3 cut(s) 1177, 1667, 1879
Bst2UI CCWGG 7 cut(s) 248, 270, 389, 1544, 1815, 1859, 2142
Bst4CI ACNGT 8 cut(s) 334, 1104, 1285, 1552, 1675, 1786, 1903, 2189
Bst6I CTCTTC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 689
BstBI TTCGAA 2 cut(s) 216, 1651
BstC8I GCNNGC 7 cut(s) 681, 723, 1435, 1686, 1780, 1996, 2000
BstDEI CTNAG 3 cut(s) 84, 532, 541
BstEII GGTNACC 1 cut(s) 1817
BstF5I GGATG 4 cut(s) 459, 828, 1927, 1969
BstFNI CGCG 2 cut(s) 38, 2005
BstHHI GCGC 2 cut(s) 38, 1338
BstKTI GATC 6 cut(s) 417, 538, 1137, 1524, 1605, 1840
BstMAI GTCTC 5 cut(s) 57, 270, 582, 864, 1291
BstMBI GATC 6 cut(s) 414, 535, 1134, 1521, 1602, 1837
BstMCI CGRYCG 2 cut(s) 1133, 1137
BstMWI GCNNNNNNNGC 4 cut(s) 560, 676, 689, 1094
BstNI CCWGG 7 cut(s) 248, 270, 389, 1544, 1815, 1859, 2142
BstPI GGTNACC 1 cut(s) 1817
BstSCI CCNGG 8 cut(s) 246, 268, 387, 549, 1542, 1813, 1857, 2140
BstSFI CTRYAG 2 cut(s) 974, 1671
BstUI CGCG 2 cut(s) 38, 2005
BstV1I GCAGC 7 cut(s) 355, 388, 547, 679, 1162, 1739, 1762
BstV2I GAAGAC 4 cut(s) 459, 719, 1342, 2199
BstX2I RGATCY 3 cut(s) 414, 535, 1521
BstYI RGATCY 3 cut(s) 414, 535, 1521
BstZ17I GTATAC 3 cut(s) 1177, 1667, 1879
Bsu15I ATCGAT 1 cut(s) 1605
BsuI GTATCC 3 cut(s) 597, 910, 1176
BsuRI GGCC 9 cut(s) 14, 554, 760, 803, 936, 1433, 1517, 1857, 1968
BsuTUI ATCGAT 1 cut(s) 1605
BtsCI GGATG 4 cut(s) 459, 828, 1927, 1969
BtsI GCAGTG 1 cut(s) 1737
BtsIMutI CAGTG 5 cut(s) 330, 1737, 1782, 2093, 2194
Cac8I GCNNGC 7 cut(s) 681, 723, 1435, 1686, 1780, 1996, 2000
CaiI CAGNNNCTG 2 cut(s) 982, 1960
CciI TCATGA 2 cut(s) 496, 1189
CfoI GCGC 2 cut(s) 38, 1338
Cfr13I GGNCC 4 cut(s) 12, 552, 801, 918
ClaI ATCGAT 1 cut(s) 1605
CseI GACGC 2 cut(s) 74, 779
CsiI ACCWGGT 2 cut(s) 246, 387
Csp6I GTAC 1 cut(s) 1313
CviQI GTAC 1 cut(s) 1313
DdeI CTNAG 3 cut(s) 84, 532, 541
DpnI GATC 6 cut(s) 416, 537, 1136, 1523, 1604, 1839
DpnII GATC 6 cut(s) 414, 535, 1134, 1521, 1602, 1837
DraI TTTAAA 1 cut(s) 2218
DriI GACNNNNNGTC 1 cut(s) 1346
EaeI YGGCCR 2 cut(s) 1855, 1966
Eam1104I CTCTTC 1 cut(s) 36
Eam1105I GACNNNNNGTC 1 cut(s) 1346
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 2225
Eco147I AGGCCT 1 cut(s) 1433
Eco24I GRGCYC 1 cut(s) 2211
Eco31I GGTCTC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 918
Eco57I CTGAAG 3 cut(s) 978, 1649, 1854
Eco88I CYCGRG 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 1817
EcoO65I GGTNACC 1 cut(s) 1817
EcoRI GAATTC 2 cut(s) 232, 1975
EcoRII CCWGG 7 cut(s) 246, 268, 387, 1542, 1813, 1857, 2140
EcoT14I CCWWGG 1 cut(s) 2225
EcoT38I GRGCYC 1 cut(s) 2211
ErhI CCWWGG 1 cut(s) 2225
Esp3I CGTCTC 1 cut(s) 57
FaqI GGGAC 5 cut(s) 717, 931, 950, 1111, 1965
FauNDI CATATG 2 cut(s) 1690, 1916
FblI GTMKAC 3 cut(s) 1176, 1666, 1878
FokI GGATG 4 cut(s) 466, 835, 1934, 1976
FriOI GRGCYC 1 cut(s) 2211
FspBI CTAG 5 cut(s) 296, 609, 1355, 1577, 1889
GlaI GCGC 2 cut(s) 37, 1337
GsaI CCCAGC 1 cut(s) 1529
GsuI CTGGAG 2 cut(s) 291, 1770
HaeIII GGCC 9 cut(s) 14, 554, 760, 803, 936, 1433, 1517, 1857, 1968
HapII CCGG 1 cut(s) 550
HgaI GACGC 2 cut(s) 74, 779
HhaI GCGC 2 cut(s) 38, 1338
Hin6I GCGC 2 cut(s) 36, 1336
HinP1I GCGC 2 cut(s) 36, 1336
HindIII AAGCTT 1 cut(s) 220
HpaII CCGG 1 cut(s) 550
HphI GGTGA 2 cut(s) 1297, 1829
Hpy166II GTNNAC 6 cut(s) 310, 547, 1177, 1667, 1809, 1879
Hpy188I TCNGA 7 cut(s) 231, 841, 997, 1296, 1321, 1629, 1932
Hpy8I GTNNAC 6 cut(s) 310, 547, 1177, 1667, 1809, 1879
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 7 cut(s) 223, 297, 641, 1078, 1270, 1895, 2176
HpyCH4III ACNGT 8 cut(s) 334, 1104, 1285, 1552, 1675, 1786, 1903, 2189
HpyCH4IV ACGT 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 560, 676, 689, 1094
HpyF3I CTNAG 3 cut(s) 84, 532, 541
HpySE526I ACGT 1 cut(s) 300
HspAI GCGC 2 cut(s) 36, 1336
Kzo9I GATC 6 cut(s) 414, 535, 1134, 1521, 1602, 1837
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 7 cut(s) 355, 388, 547, 679, 1162, 1739, 1762
LweI GCATC 3 cut(s) 102, 1597, 1947
MabI ACCWGGT 2 cut(s) 246, 387
MaeI CTAG 5 cut(s) 296, 609, 1355, 1577, 1889
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 4 cut(s) 749, 1247, 1693, 1817
MalI GATC 6 cut(s) 416, 537, 1136, 1523, 1604, 1839
MboI GATC 6 cut(s) 414, 535, 1134, 1521, 1602, 1837
MflI RGATCY 3 cut(s) 414, 535, 1521
MhlI GDGCHC 2 cut(s) 1846, 2211
MlsI TGGCCA 2 cut(s) 1857, 1968
MluNI TGGCCA 2 cut(s) 1857, 1968
MlyI GAGTC 5 cut(s) 519, 746, 1031, 1293, 1804
MmeI TCCRAC 3 cut(s) 1386, 1920, 1962
Mox20I TGGCCA 2 cut(s) 1857, 1968
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 2 cut(s) 1857, 1968
MseI TTAA 9 cut(s) 303, 942, 1002, 1106, 1428, 1464, 1763, 1769, 2217
MslI CAYNNNNRTG 2 cut(s) 930, 1194
Msp20I TGGCCA 2 cut(s) 1857, 1968
MspA1I CMGCKG 3 cut(s) 1153, 1511, 1775
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 8 cut(s) 248, 270, 389, 551, 1544, 1815, 1859, 2142
Mva1269I GAATGC 3 cut(s) 439, 683, 744
MvaI CCWGG 7 cut(s) 248, 270, 389, 1544, 1815, 1859, 2142
MvnI CGCG 2 cut(s) 38, 2005
MwoI GCNNNNNNNGC 4 cut(s) 560, 676, 689, 1094
NciI CCSGG 1 cut(s) 551
NdeI CATATG 2 cut(s) 1690, 1916
NdeII GATC 6 cut(s) 414, 535, 1134, 1521, 1602, 1837
NlaIV GGNNCC 4 cut(s) 13, 252, 274, 919
NmuCI GTSAC 2 cut(s) 749, 1817
NspV TTCGAA 2 cut(s) 216, 1651
PaeR7I CTCGAG 1 cut(s) 56
PagI TCATGA 2 cut(s) 496, 1189
PceI AGGCCT 1 cut(s) 1433
PciSI GCTCTTC 1 cut(s) 36
PctI GAATGC 3 cut(s) 439, 683, 744
PdmI GAANNNNTTC 1 cut(s) 489
PflFI GACNNNGTC 1 cut(s) 962
PflMI CCANNNNNTGG 1 cut(s) 394
PfoI TCCNGGA 1 cut(s) 268
Ple19I CGATCG 1 cut(s) 1137
PleI GAGTC 5 cut(s) 518, 746, 1030, 1293, 1804
PpsI GAGTC 5 cut(s) 518, 746, 1030, 1293, 1804
Psp6I CCWGG 7 cut(s) 246, 268, 387, 1542, 1813, 1857, 2140
PspEI GGTNACC 1 cut(s) 1817
PspFI CCCAGC 1 cut(s) 1525
PspGI CCWGG 7 cut(s) 246, 268, 387, 1542, 1813, 1857, 2140
PspN4I GGNNCC 4 cut(s) 13, 252, 274, 919
PspPI GGNCC 4 cut(s) 12, 552, 801, 918
PstNI CAGNNNCTG 2 cut(s) 982, 1960
PsuI RGATCY 3 cut(s) 414, 535, 1521
PsyI GACNNNGTC 1 cut(s) 962
PvuI CGATCG 1 cut(s) 1137
PvuII CAGCTG 2 cut(s) 1153, 1775
RsaI GTAC 1 cut(s) 1314
RsaNI GTAC 1 cut(s) 1313
RseI CAYNNNNRTG 2 cut(s) 930, 1194
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 9 cut(s) 303, 942, 1002, 1106, 1428, 1464, 1763, 1769, 2217
Sau3AI GATC 6 cut(s) 414, 535, 1134, 1521, 1602, 1837
Sau96I GGNCC 4 cut(s) 12, 552, 801, 918
SchI GAGTC 5 cut(s) 519, 746, 1031, 1293, 1804
ScrFI CCNGG 8 cut(s) 248, 270, 389, 551, 1544, 1815, 1859, 2142
SduI GDGCHC 2 cut(s) 1846, 2211
SexAI ACCWGGT 2 cut(s) 246, 387
SfaNI GCATC 3 cut(s) 102, 1597, 1947
SfcI CTRYAG 2 cut(s) 974, 1671
Sfr274I CTCGAG 1 cut(s) 56
SfuI TTCGAA 2 cut(s) 216, 1651
SinI GGWCC 1 cut(s) 918
SlaI CTCGAG 1 cut(s) 56
SmiI ATTTAAAT 1 cut(s) 2218
SmiMI CAYNNNNRTG 2 cut(s) 930, 1194
SmlI CTYRAG 3 cut(s) 56, 904, 1044
SmoI CTYRAG 3 cut(s) 56, 904, 1044
SseBI AGGCCT 1 cut(s) 1433
SsiI CCGC 7 cut(s) 38, 102, 254, 257, 409, 1511, 2003
SspI AATATT 1 cut(s) 1791
SspMI CTAG 5 cut(s) 296, 609, 1355, 1577, 1889
StuI AGGCCT 1 cut(s) 1433
StyD4I CCNGG 8 cut(s) 246, 268, 387, 549, 1542, 1813, 1857, 2140
StyI CCWWGG 1 cut(s) 2225
SwaI ATTTAAAT 1 cut(s) 2218
TaaI ACNGT 8 cut(s) 334, 1104, 1285, 1552, 1675, 1786, 1903, 2189
TaiI ACGT 1 cut(s) 303
TaqI TCGA 8 cut(s) 57, 216, 586, 618, 1137, 1557, 1605, 1651
TaqII GACCGA 2 cut(s) 1147, 1858
TatI WGTACW 1 cut(s) 1312
TauI GCSGC 3 cut(s) 256, 259, 2005
Tru1I TTAA 9 cut(s) 303, 942, 1002, 1106, 1428, 1464, 1763, 1769, 2217
Tru9I TTAA 9 cut(s) 303, 942, 1002, 1106, 1428, 1464, 1763, 1769, 2217
TscAI CASTG 5 cut(s) 337, 1737, 1789, 2100, 2194
TseFI GTSAC 2 cut(s) 749, 1817
TseI GCWGC 7 cut(s) 368, 401, 560, 667, 1150, 1727, 1775
Tsp45I GTSAC 2 cut(s) 749, 1817
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 5 cut(s) 337, 1737, 1789, 2100, 2194
Tth111I GACNNNGTC 1 cut(s) 962
Van91I CCANNNNNTGG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 918
XapI RAATTY 7 cut(s) 28, 232, 338, 374, 1466, 1975, 2213
XbaI TCTAGA 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 3 cut(s) 1176, 1666, 1878
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 5 cut(s) 296, 609, 1355, 1577, 1889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.