Rorug04G0220400

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007739
Physical Location & Seq
Reverse (-)
38001294 .. 38002307
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0220400.1

Sequence Viewer

Length: 1014 bp
ATGTTGTTGAGGAGAGGAATCAAATTCGCTTCAGCAGCATTTCCACATTTCATTTCCAAGGCTCCTAATTTTCGCTGTAAAGCCACCACCACGGTTCCCATTTTCGATCATTCGGCATACTACTCTAGTGGCTTTCGCCTCTCTCCTTTGTTCCCCTCCCAACCCAAACCTCAGTCGGATAGTTATGATATTGAGCTTGTTGACGATGATGCATGGCGGGTTTCCTCAGGTTTGGCGCTTGCGGATCAGGGGACTGCATTGGAGGAACAAAGTTGCTTATCGGATGAAGCGGTTGATGAACCTGTTGATAGTTGCTCTCTACCTCTTGAGGGTGACCCGGATTTCGATGACATTGACAACATGAGAGTTCGGGGTAAACTGTTCTATAAAATCGACCGCGGTTCCAAAGAGTTTGAAGAGTATAGTTTCGACTTCCATCGTAGGAACAAGTCTTCTAAGAAGAAGGATGATCCAAAGGAGAAGAAACAGAAGGTTACTAGTTTGAAGGAAAGCAAAAGAGACAACCCAATTCCCAAGTTTTCCTCAAGAAGTGAGAAACAGTGTAGAGTTGTGGACAACTCTCGGCTAGGTGAAATGGGCGCTACTTGTGTTGAGAAGAAGAAGCTGAGAACTCCGACGTATAATCAGCTCACTGGTCCTTTCCACGAGCCGTTTTGCCTTGATGTTTACATATCCAAGGCTTCAGTTCGTGCCTGCATTGTTCACAGGTTCACCAGTAAGGTTGTTGCCGTGGCACATTCCATATCGAAGGACATGAAGTTTGACCTTGGTTCAACTAGGAATGCAGCTGCTTGTGCTGCTGTTGGGGAAGTTCTGGCTCAGAGGGCATTGGGCGATGACATCCATGATGTGATTTACACACCAAGGAAAGGGGAAAGATTGGAGGGCAAGCTTCAAATTGTGGTTCAGTCTCTAATTGATAACGGCATTAATGTGAAGGTGAAGATCAAACAAAGGGCGCGGAAGAAACCAACTTCCTTTTCTGCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

337

Amino Acids

37.75

Weight (kDa)

9.1

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 226 - 318 1.7e-08 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 399, 982
AciI CCGC 6 cut(s) 217, 242, 290, 397, 399, 982
AclWI GGATC 2 cut(s) 252, 464
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 15, 687
AfiI CCNNNNNNNGG 2 cut(s) 329, 890
AgsI TTSAA 4 cut(s) 416, 505, 795, 917
AhlI ACTAGT 1 cut(s) 497
AjuI GAANNNNNNNTTGG 1 cut(s) 985
AluBI AGCT 5 cut(s) 196, 625, 649, 809, 913
AluI AGCT 5 cut(s) 196, 625, 649, 809, 913
Alw26I GTCTC 2 cut(s) 513, 936
AlwI GGATC 2 cut(s) 252, 464
ApeKI GCWGC 5 cut(s) 35, 806, 809, 818, 1007
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 4 cut(s) 326, 358, 764, 796
AseI ATTAAT 1 cut(s) 951
AspLEI GCGC 3 cut(s) 238, 602, 982
AspS9I GGNCC 1 cut(s) 656
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 4 cut(s) 344, 602, 724, 973
AvaII GGWCC 1 cut(s) 656
AxyI CCTNAGG 1 cut(s) 226
BauI CACGAG 1 cut(s) 665
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 4 cut(s) 47, 796, 805, 818
BccI CCATC 1 cut(s) 444
BceAI ACGGC 3 cut(s) 655, 734, 961
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 513, 936
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 5 cut(s) 126, 498, 587, 798, 1012
BfmI CTRYAG 1 cut(s) 1005
BfoI RGCGCY 2 cut(s) 239, 603
BisI GCNGC 5 cut(s) 36, 807, 810, 819, 1008
BlsI GCNGC 5 cut(s) 37, 808, 811, 820, 1009
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 3 cut(s) 63, 96, 403
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 347, 529
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 7 cut(s) 57, 90, 397, 696, 750, 787, 884
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 890
Bse1I ACTGG 2 cut(s) 658, 735
Bse21I CCTNAGG 1 cut(s) 226
BseDI CCNNGG 7 cut(s) 57, 90, 397, 696, 750, 787, 884
BseGI GGATG 3 cut(s) 289, 472, 861
BseLI CCNNNNNNNGG 2 cut(s) 329, 890
BseMII CTCAG 4 cut(s) 185, 240, 617, 854
BseNI ACTGG 2 cut(s) 658, 735
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 4 cut(s) 47, 796, 805, 818
Bsh1236I CGCG 2 cut(s) 399, 982
Bsh1285I CGRYCG 1 cut(s) 397
BsiEI CGRYCG 1 cut(s) 397
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 329, 890
BsmAI GTCTC 2 cut(s) 513, 936
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 808
Bsp143I GATC 4 cut(s) 106, 244, 469, 966
BspACI CCGC 6 cut(s) 217, 242, 290, 397, 399, 982
BspCNI CTCAG 4 cut(s) 184, 239, 618, 853
BspFNI CGCG 2 cut(s) 399, 982
BspLI GGNNCC 3 cut(s) 63, 96, 403
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 2 cut(s) 252, 464
BsrI ACTGG 2 cut(s) 658, 735
BssECI CCNNGG 7 cut(s) 57, 90, 397, 696, 750, 787, 884
BssMI GATC 4 cut(s) 106, 244, 469, 966
BssSI CACGAG 1 cut(s) 665
BssT1I CCWWGG 4 cut(s) 57, 696, 787, 884
Bst2BI CACGAG 1 cut(s) 665
Bst4CI ACNGT 3 cut(s) 94, 381, 561
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 3 cut(s) 240, 715, 911
BstDEI CTNAG 5 cut(s) 171, 226, 456, 626, 840
BstDSI CCRYGG 3 cut(s) 90, 397, 750
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 3 cut(s) 289, 472, 861
BstFNI CGCG 2 cut(s) 399, 982
BstH2I RGCGCY 2 cut(s) 239, 603
BstHHI GCGC 3 cut(s) 238, 602, 982
BstKTI GATC 4 cut(s) 109, 247, 472, 969
BstMAI GTCTC 2 cut(s) 513, 936
BstMBI GATC 4 cut(s) 106, 244, 469, 966
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 4 cut(s) 35, 815, 818, 845
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 1005
BstUI CGCG 2 cut(s) 399, 982
BstV1I GCAGC 4 cut(s) 47, 796, 805, 818
BstV2I GAAGAC 1 cut(s) 444
Bsu36I CCTNAGG 1 cut(s) 226
BtgI CCRYGG 3 cut(s) 90, 397, 750
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 3 cut(s) 289, 472, 861
BtsIMutI CAGTG 2 cut(s) 566, 651
Cac8I GCNNGC 3 cut(s) 240, 715, 911
CfoI GCGC 3 cut(s) 238, 602, 982
Cfr13I GGNCC 1 cut(s) 656
Cfr42I CCGCGG 1 cut(s) 400
CviAII CATG 4 cut(s) 213, 361, 775, 866
DdeI CTNAG 5 cut(s) 171, 226, 456, 626, 840
DpnI GATC 4 cut(s) 108, 246, 471, 968
DpnII GATC 4 cut(s) 106, 244, 469, 966
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 4 cut(s) 57, 696, 787, 884
Eco47I GGWCC 1 cut(s) 656
Eco57I CTGAAG 2 cut(s) 15, 687
Eco81I CCTNAGG 1 cut(s) 226
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoT14I CCWWGG 4 cut(s) 57, 696, 787, 884
EcoT22I ATGCAT 1 cut(s) 214
ErhI CCWWGG 4 cut(s) 57, 696, 787, 884
FaeI CATG 4 cut(s) 216, 364, 778, 869
FaqI GGGAC 1 cut(s) 265
FatI CATG 4 cut(s) 212, 360, 774, 865
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 5 cut(s) 36, 807, 810, 819, 1008
FokI GGATG 3 cut(s) 296, 479, 848
Fsp4HI GCNGC 5 cut(s) 36, 807, 810, 819, 1008
FspBI CTAG 5 cut(s) 126, 498, 587, 798, 1012
GlaI GCGC 3 cut(s) 237, 601, 981
GluI GCNGC 5 cut(s) 36, 807, 810, 819, 1008
HaeII RGCGCY 2 cut(s) 239, 603
HapII CCGG 1 cut(s) 338
HhaI GCGC 3 cut(s) 238, 602, 982
Hin1II CATG 4 cut(s) 216, 364, 778, 869
Hin6I GCGC 3 cut(s) 236, 600, 980
HinP1I GCGC 3 cut(s) 236, 600, 980
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 338
HphI GGTGA 4 cut(s) 344, 602, 724, 973
Hpy166II GTNNAC 6 cut(s) 202, 377, 574, 688, 724, 732
Hpy188I TCNGA 4 cut(s) 178, 283, 636, 843
Hpy188III TCNNGA 2 cut(s) 326, 546
Hpy8I GTNNAC 6 cut(s) 202, 377, 574, 688, 724, 732
Hpy99I CGWCG 1 cut(s) 640
HpyAV CCTTC 5 cut(s) 457, 484, 499, 763, 952
HpyCH4III ACNGT 3 cut(s) 94, 381, 561
HpyCH4IV ACGT 1 cut(s) 638
HpyCH4V TGCA 5 cut(s) 212, 257, 717, 806, 1007
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 815, 818, 845
HpyF3I CTNAG 5 cut(s) 171, 226, 456, 626, 840
HpySE526I ACGT 1 cut(s) 638
Hsp92II CATG 4 cut(s) 216, 364, 778, 869
HspAI GCGC 3 cut(s) 236, 600, 980
KspI CCGCGG 1 cut(s) 400
Kzo9I GATC 4 cut(s) 106, 244, 469, 966
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 9 cut(s) 213, 233, 315, 351, 639, 712, 727, 748, 821
Lsp1109I GCAGC 4 cut(s) 47, 796, 805, 818
LweI GCATC 1 cut(s) 199
MaeI CTAG 5 cut(s) 126, 498, 587, 798, 1012
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 2 cut(s) 332, 493
MalI GATC 4 cut(s) 108, 246, 471, 968
MboI GATC 4 cut(s) 106, 244, 469, 966
MboII GAAGA 8 cut(s) 428, 444, 472, 493, 628, 631, 976, 997
MluCI AATT 5 cut(s) 23, 67, 528, 918, 936
MmeI TCCRAC 2 cut(s) 156, 659
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 1 cut(s) 951
MslI CAYNNNNRTG 1 cut(s) 953
MspA1I CMGCKG 2 cut(s) 399, 809
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 808
MvnI CGCG 2 cut(s) 399, 982
MwoI GCNNNNNNNGC 4 cut(s) 35, 815, 818, 845
NciI CCSGG 1 cut(s) 338
NdeII GATC 4 cut(s) 106, 244, 469, 966
NlaIII CATG 4 cut(s) 216, 364, 778, 869
NlaIV GGNNCC 3 cut(s) 63, 96, 403
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 214
PctI GAATGC 1 cut(s) 808
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 5 cut(s) 37, 808, 811, 820, 1009
PshBI ATTAAT 1 cut(s) 951
PspEI GGTNACC 1 cut(s) 332
PspN4I GGNNCC 3 cut(s) 63, 96, 403
PspPI GGNCC 1 cut(s) 656
PstI CTGCAG 1 cut(s) 1009
PvuII CAGCTG 1 cut(s) 809
RseI CAYNNNNRTG 1 cut(s) 953
SacII CCGCGG 1 cut(s) 400
SaqAI TTAA 1 cut(s) 951
SatI GCNGC 5 cut(s) 36, 807, 810, 819, 1008
Sau3AI GATC 4 cut(s) 106, 244, 469, 966
Sau96I GGNCC 1 cut(s) 656
ScrFI CCNGG 1 cut(s) 338
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 1005
Sfr303I CCGCGG 1 cut(s) 400
SgrBI CCGCGG 1 cut(s) 400
SinI GGWCC 1 cut(s) 656
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 2 cut(s) 326, 544
SmoI CTYRAG 2 cut(s) 326, 544
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 5 cut(s) 23, 67, 528, 918, 936
SsiI CCGC 6 cut(s) 217, 242, 290, 397, 399, 982
SspMI CTAG 5 cut(s) 126, 498, 587, 798, 1012
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 4 cut(s) 57, 696, 787, 884
TaaI ACNGT 3 cut(s) 94, 381, 561
TaiI ACGT 1 cut(s) 641
TaqI TCGA 5 cut(s) 105, 345, 393, 429, 767
TasI AATT 5 cut(s) 23, 67, 528, 918, 936
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 951
Tru9I TTAA 1 cut(s) 951
TscAI CASTG 2 cut(s) 566, 658
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 5 cut(s) 35, 806, 809, 818, 1007
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 4 cut(s) 40, 300, 312, 791
TspRI CASTG 2 cut(s) 566, 658
VpaK11BI GGWCC 1 cut(s) 656
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 1 cut(s) 23
XspI CTAG 5 cut(s) 126, 498, 587, 798, 1012
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.