pycom16g11830

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
8235927 .. 8242354
6428 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11830.5

Sequence Viewer

Length: 1557 bp
ATGGCGTTGGAGGACGACGACTGGGATTTGAGCGCCGAAGAATTCGACTCTCTCGAAAGAGACGCGTTTCAGAAACTCGCTCAGCAACGCGTCAACTCCGCTTCCACTTGTTCTTCCTCCTCCTCATCGTATCCTTCATACGATCACCGCCAGGTGGATCGATCTTTCCTTGCCACGAACAATTACAACAGCAACAGCAGCTTCCAGAGTTCCCCTGCGAAACCCGTTTCGAATTCTCTTCCGAACAAGGTAGCAGCTTTGCCAACCGGAACTAGAGTATTACGTCCATCAGTCCCATGTAAAGTAAACCTGGAGAAAGTTCTTCATGAGACATCTGGTGTTAATGTTGAGGTAGAGAACTTAGATCCCTTAGTTCACCGTGCTATTGCTGCTGCCTCTGTTGTTCCAGACCTTCGAGACCAATATGATAGGATACCTAGTTGTATAGAATCGAAGCTCTTGCCATTTCAGCGAGAAGGTGTTAGGTTTATCTTGCAGCACGGGGGGCGTGCTCTCCTTGCAGATGAAATGGGATTGGGAAAGACTATACAGGCTATTGCTGTTGCATCTTGTGTTTGTGACTCTTGGCCAGTTCTTATAATCACACCATCTTCCTTGCGTTTACAATGGGCCTCTGTTGTTTTGTCTCAATGCAGTGGGTCAAACAAAAGTGGGTTTACAACTGTATCCCCAAACGTCAAAGGGACGATTCACCTTGATGGCCTATTTAACATCATCTCCTATGATGTAGTCCCTAAAATACAGAATCTACTAATGGCATCAGAGTTTAAGGTTGTGATTGCAGATGAGTCACACTTTTTGAAAAATGCTCAAGCAAAAAGGACAAGTGCTTGCCTTCCTGTCATAAAGAGGGCTCAATACGCAATATTGCTGAGTGGTACTCCTGCTTTGTCCCGACCGATTGAACTATTTAAGCAGCTTGAAGCCTTGTATCCTGATGTATACAAAAGTGTTCACGAATATGGTAATCGATATTGCAAGGGTGGAACGTTTGGATTGTATCAAGGTGCATGTAACCATGAAGAATTGCATAATTTGATGAAGGCAACAGTGATGATTCGCAGACTAAAAAATGATGTTCTTTCTGAGCTTCCTGTGAAGCGTAGGCAACAGGTCTTTTTGGATTTGGCTGAAAAGGACATGAAACAAATCAATGCTTTATTCAGGGAGTTGGAAGTGGTAAAAGGGAAAATTAAGGCCTGCCAATCCAAAGAAGAGGTTGATTCACTCAAGTTTACTGAGAAGAATCTTATTAATAAGATATATACTGATTCTGCTGAGGCTAAGATCCCCGCAGTTTTGGATTACCTGGGAACTGTCATTGAGGCAGGCTGCAAGTTTCTAGTATTTGCACACCATCAGTCCATGATTGATTCGATATATCAGTTTCTTCTGGTAAGAAAAAGAAAGTGGGTTGCATTCGAATTGATGGAAGTATCCCTACTGTGGCAAGGCAAGCTTATGTTACAGAATTTCAAGAAAAAGATTCTGTCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

58.05

Weight (kDa)

8.66

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AccI GTMKAC 1 cut(s) 963
AccII CGCG 2 cut(s) 65, 90
AciI CCGC 3 cut(s) 99, 148, 1314
AclI AACGTT 1 cut(s) 1010
AclWI GGATC 3 cut(s) 165, 359, 1303
AcoI YGGCCR 1 cut(s) 587
AcsI RAATTY 3 cut(s) 41, 232, 1492
AfaI GTAC 1 cut(s) 901
AfiI CCNNNNNNNGG 2 cut(s) 154, 1467
AflIII ACRYGT 2 cut(s) 63, 88
AgsI TTSAA 4 cut(s) 823, 926, 944, 1498
AjnI CCWGG 3 cut(s) 150, 309, 1329
AluBI AGCT 7 cut(s) 201, 257, 457, 940, 1111, 1480, 1540
AluI AGCT 7 cut(s) 201, 257, 457, 940, 1111, 1480, 1540
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 4 cut(s) 54, 323, 411, 651
AlwI GGATC 3 cut(s) 165, 359, 1303
AoxI GGCC 4 cut(s) 587, 630, 721, 1218
ApeKI GCWGC 8 cut(s) 198, 254, 389, 392, 496, 937, 1353, 1519
ApoI RAATTY 3 cut(s) 41, 232, 1492
AseI ATTAAT 1 cut(s) 1275
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 630
AsuHPI GGTGA 3 cut(s) 137, 368, 704
AsuII TTCGAA 2 cut(s) 230, 1443
BaeI ACNNNNGTAYC 2 cut(s) 669, 702
BalI TGGCCA 1 cut(s) 589
BanII GRGCYC 1 cut(s) 877
BarI GAAGNNNNNNTAC 2 cut(s) 1446, 1478
Bbv12I GWGCWC 1 cut(s) 514
BbvCI CCTCAGC 1 cut(s) 1299
BbvI GCAGC 8 cut(s) 210, 266, 376, 379, 508, 949, 1340, 1531
BccI CCATC 5 cut(s) 295, 616, 713, 1386, 1444
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 3 cut(s) 152, 311, 1331
BciVI GTATCC 5 cut(s) 141, 426, 697, 963, 1468
BcoDI GTCTC 4 cut(s) 54, 323, 411, 651
BfaI CTAG 3 cut(s) 273, 438, 1364
BfoI RGCGCY 1 cut(s) 36
BfuI GTATCC 5 cut(s) 141, 426, 697, 963, 1468
BisI GCNGC 8 cut(s) 199, 255, 390, 393, 497, 938, 1354, 1520
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 8 cut(s) 200, 256, 391, 394, 498, 939, 1355, 1521
Bme1390I CCNGG 3 cut(s) 152, 311, 1331
BmgT120I GGNCC 1 cut(s) 630
BmrFI CCNGG 3 cut(s) 152, 311, 1331
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 575, 788
BmuI ACTGGG 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 886, 918
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 1299
Bpu1102I GCTNAGC 1 cut(s) 81
Bpu14I TTCGAA 2 cut(s) 230, 1443
BpuEI CTTGAG 2 cut(s) 816, 1235
Bsa29I ATCGAT 2 cut(s) 160, 991
BsaI GGTCTC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 1330
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 1467
Bse1I ACTGG 2 cut(s) 26, 590
BseBI CCWGG 3 cut(s) 152, 311, 1331
BseCI ATCGAT 2 cut(s) 160, 991
BseDI CCNNGG 1 cut(s) 1330
BseLI CCNNNNNNNGG 2 cut(s) 154, 1467
BseMII CTCAG 5 cut(s) 95, 884, 1098, 1251, 1290
BseNI ACTGG 2 cut(s) 26, 590
BseRI GAGGAG 2 cut(s) 109, 112
BseXI GCAGC 8 cut(s) 210, 266, 376, 379, 508, 949, 1340, 1531
Bsh1236I CGCG 2 cut(s) 65, 90
Bsh1285I CGRYCG 1 cut(s) 920
BshFI GGCC 4 cut(s) 589, 632, 723, 1220
BshVI ATCGAT 2 cut(s) 160, 991
BsiEI CGRYCG 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 514
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 4 cut(s) 278, 718, 737, 898
BslI CCNNNNNNNGG 2 cut(s) 154, 1467
BsmAI GTCTC 4 cut(s) 54, 323, 411, 651
BsmBI CGTCTC 1 cut(s) 54
BsmFI GGGAC 4 cut(s) 278, 718, 737, 898
BsmI GAATGC 1 cut(s) 1439
BsnI GGCC 4 cut(s) 589, 632, 723, 1220
Bso31I GGTCTC 1 cut(s) 411
Bsp119I TTCGAA 2 cut(s) 230, 1443
Bsp1286I GDGCHC 2 cut(s) 514, 877
Bsp143I GATC 5 cut(s) 142, 157, 161, 364, 1308
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 3 cut(s) 99, 148, 1314
BspANI GGCC 4 cut(s) 589, 632, 723, 1220
BspCNI CTCAG 5 cut(s) 94, 885, 1099, 1252, 1291
BspDI ATCGAT 2 cut(s) 160, 991
BspFNI CGCG 2 cut(s) 65, 90
BspHI TCATGA 1 cut(s) 325
BspPI GGATC 3 cut(s) 165, 359, 1303
BspT104I TTCGAA 2 cut(s) 230, 1443
BspTNI GGTCTC 1 cut(s) 411
BsrI ACTGG 2 cut(s) 26, 590
BssECI CCNNGG 1 cut(s) 1330
BssMI GATC 5 cut(s) 142, 157, 161, 364, 1308
BssNAI GTATAC 1 cut(s) 964
Bst1107I GTATAC 1 cut(s) 964
Bst2UI CCWGG 3 cut(s) 152, 311, 1331
Bst4CI ACNGT 5 cut(s) 380, 685, 1072, 1339, 1467
Bst6I CTCTTC 2 cut(s) 243, 1230
BstBI TTCGAA 2 cut(s) 230, 1443
BstC8I GCNNGC 5 cut(s) 510, 853, 1222, 1351, 1478
BstDEI CTNAG 8 cut(s) 81, 361, 370, 893, 1107, 1260, 1299, 1305
BstFNI CGCG 2 cut(s) 65, 90
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 5 cut(s) 145, 160, 164, 367, 1311
BstMAI GTCTC 4 cut(s) 54, 323, 411, 651
BstMBI GATC 5 cut(s) 142, 157, 161, 364, 1308
BstMCI CGRYCG 1 cut(s) 920
BstMWI GCNNNNNNNGC 7 cut(s) 198, 389, 469, 505, 518, 881, 1477
BstNI CCWGG 3 cut(s) 152, 311, 1331
BstNSI RCATGY 1 cut(s) 1035
BstSCI CCNGG 3 cut(s) 150, 309, 1329
BstUI CGCG 2 cut(s) 65, 90
BstV1I GCAGC 8 cut(s) 210, 266, 376, 379, 508, 949, 1340, 1531
BstX2I RGATCY 2 cut(s) 364, 1308
BstYI RGATCY 2 cut(s) 364, 1308
BstZ17I GTATAC 1 cut(s) 964
Bsu15I ATCGAT 2 cut(s) 160, 991
BsuI GTATCC 5 cut(s) 141, 426, 697, 963, 1468
BsuRI GGCC 4 cut(s) 589, 632, 723, 1220
BsuTUI ATCGAT 2 cut(s) 160, 991
BtsI GCAGTG 2 cut(s) 661, 1529
BtsIMutI CAGTG 3 cut(s) 661, 1077, 1529
Cac8I GCNNGC 5 cut(s) 510, 853, 1222, 1351, 1478
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 630
ClaI ATCGAT 2 cut(s) 160, 991
CseI GACGC 2 cut(s) 71, 79
Csp6I GTAC 1 cut(s) 900
CviAII CATG 6 cut(s) 297, 326, 1032, 1040, 1162, 1387
CviQI GTAC 1 cut(s) 900
DdeI CTNAG 8 cut(s) 81, 361, 370, 893, 1107, 1260, 1299, 1305
DpnI GATC 5 cut(s) 144, 159, 163, 366, 1310
DpnII GATC 5 cut(s) 142, 157, 161, 364, 1308
EaeI YGGCCR 1 cut(s) 587
Eam1104I CTCTTC 2 cut(s) 243, 1230
EarI CTCTTC 2 cut(s) 243, 1230
Eco147I AGGCCT 1 cut(s) 1220
Eco24I GRGCYC 1 cut(s) 877
Eco31I GGTCTC 1 cut(s) 411
EcoRI GAATTC 2 cut(s) 41, 232
EcoRII CCWGG 3 cut(s) 150, 309, 1329
EcoT38I GRGCYC 1 cut(s) 877
Esp3I CGTCTC 1 cut(s) 54
FaeI CATG 6 cut(s) 300, 329, 1035, 1043, 1165, 1390
FalI AAGNNNNNCTT 2 cut(s) 1464, 1496
FaqI GGGAC 4 cut(s) 278, 718, 737, 898
FatI CATG 6 cut(s) 296, 325, 1031, 1039, 1161, 1386
FauI CCCGC 1 cut(s) 1321
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 8 cut(s) 199, 255, 390, 393, 497, 938, 1354, 1520
FriOI GRGCYC 1 cut(s) 877
Fsp4HI GCNGC 8 cut(s) 199, 255, 390, 393, 497, 938, 1354, 1520
FspBI CTAG 3 cut(s) 273, 438, 1364
GlaI GCGC 1 cut(s) 34
GluI GCNGC 8 cut(s) 199, 255, 390, 393, 497, 938, 1354, 1520
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 4 cut(s) 589, 632, 723, 1220
HapII CCGG 1 cut(s) 267
HgaI GACGC 2 cut(s) 71, 79
HhaI GCGC 1 cut(s) 35
Hin1II CATG 6 cut(s) 300, 329, 1035, 1043, 1165, 1390
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 1478
HpaII CCGG 1 cut(s) 267
HphI GGTGA 3 cut(s) 137, 368, 704
Hpy166II GTNNAC 8 cut(s) 94, 307, 376, 623, 678, 964, 976, 1257
Hpy188I TCNGA 4 cut(s) 72, 243, 784, 1108
Hpy188III TCNNGA 9 cut(s) 53, 205, 326, 407, 416, 915, 956, 977, 1498
Hpy8I GTNNAC 8 cut(s) 94, 307, 376, 623, 678, 964, 976, 1257
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 5 cut(s) 144, 422, 470, 866, 1057
HpyCH4III ACNGT 5 cut(s) 380, 685, 1072, 1339, 1467
HpyCH4IV ACGT 3 cut(s) 283, 696, 1010
HpyF10VI GCNNNNNNNGC 7 cut(s) 198, 389, 469, 505, 518, 881, 1477
HpyF3I CTNAG 8 cut(s) 81, 361, 370, 893, 1107, 1260, 1299, 1305
HpySE526I ACGT 3 cut(s) 283, 696, 1010
Hsp92II CATG 6 cut(s) 300, 329, 1035, 1043, 1165, 1390
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 5 cut(s) 142, 157, 161, 364, 1308
Lsp1109I GCAGC 8 cut(s) 210, 266, 376, 379, 508, 949, 1340, 1531
LweI GCATC 2 cut(s) 575, 788
MaeI CTAG 3 cut(s) 273, 438, 1364
MaeII ACGT 3 cut(s) 283, 696, 1010
MaeIII GTNAC 4 cut(s) 578, 810, 1034, 1485
MalI GATC 5 cut(s) 144, 159, 163, 366, 1310
MboI GATC 5 cut(s) 142, 157, 161, 364, 1308
MboII GAAGA 9 cut(s) 50, 105, 230, 314, 603, 1055, 1247, 1276, 1403
MflI RGATCY 2 cut(s) 364, 1308
MhlI GDGCHC 2 cut(s) 514, 877
MlsI TGGCCA 1 cut(s) 589
MluCI AATT 8 cut(s) 41, 181, 232, 1046, 1054, 1212, 1445, 1492
MluI ACGCGT 2 cut(s) 63, 88
MluNI TGGCCA 1 cut(s) 589
MlyI GAGTC 3 cut(s) 41, 575, 818
MmeI TCCRAC 2 cut(s) 1173, 1530
Mox20I TGGCCA 1 cut(s) 589
MscI TGGCCA 1 cut(s) 589
MseI TTAA 8 cut(s) 342, 729, 789, 933, 1215, 1275, 1535, 1555
MslI CAYNNNNRTG 2 cut(s) 717, 981
Msp20I TGGCCA 1 cut(s) 589
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 3 cut(s) 152, 311, 1331
Mva1269I GAATGC 1 cut(s) 1439
MvaI CCWGG 3 cut(s) 152, 311, 1331
MvnI CGCG 2 cut(s) 65, 90
MwoI GCNNNNNNNGC 7 cut(s) 198, 389, 469, 505, 518, 881, 1477
NdeII GATC 5 cut(s) 142, 157, 161, 364, 1308
NlaIII CATG 6 cut(s) 300, 329, 1035, 1043, 1165, 1390
NmuCI GTSAC 2 cut(s) 578, 810
NspI RCATGY 1 cut(s) 1035
NspV TTCGAA 2 cut(s) 230, 1443
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 1 cut(s) 1220
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 1439
PfeI GAWTC 9 cut(s) 449, 709, 766, 1078, 1244, 1267, 1292, 1394, 1507
PkrI GCNGC 8 cut(s) 200, 256, 391, 394, 498, 939, 1355, 1521
PleI GAGTC 3 cut(s) 41, 575, 817
PpsI GAGTC 3 cut(s) 41, 575, 817
PshBI ATTAAT 1 cut(s) 1275
PsiI TTATAA 1 cut(s) 599
Psp1406I AACGTT 1 cut(s) 1010
Psp6I CCWGG 3 cut(s) 150, 309, 1329
PspGI CCWGG 3 cut(s) 150, 309, 1329
PspPI GGNCC 1 cut(s) 630
PsuI RGATCY 2 cut(s) 364, 1308
RsaI GTAC 1 cut(s) 901
RsaNI GTAC 1 cut(s) 900
RseI CAYNNNNRTG 2 cut(s) 717, 981
SaqAI TTAA 8 cut(s) 342, 729, 789, 933, 1215, 1275, 1535, 1555
SatI GCNGC 8 cut(s) 199, 255, 390, 393, 497, 938, 1354, 1520
Sau3AI GATC 5 cut(s) 142, 157, 161, 364, 1308
Sau96I GGNCC 1 cut(s) 630
SchI GAGTC 3 cut(s) 41, 575, 818
ScrFI CCNGG 3 cut(s) 152, 311, 1331
SduI GDGCHC 2 cut(s) 514, 877
SfaNI GCATC 2 cut(s) 575, 788
SfuI TTCGAA 2 cut(s) 230, 1443
SmiMI CAYNNNNRTG 2 cut(s) 717, 981
SmlI CTYRAG 2 cut(s) 831, 1250
SmoI CTYRAG 2 cut(s) 831, 1250
Sse9I AATT 8 cut(s) 41, 181, 232, 1046, 1054, 1212, 1445, 1492
SseBI AGGCCT 1 cut(s) 1220
SsiI CCGC 3 cut(s) 99, 148, 1314
SspI AATATT 1 cut(s) 888
SspMI CTAG 3 cut(s) 273, 438, 1364
StuI AGGCCT 1 cut(s) 1220
StyD4I CCNGG 3 cut(s) 150, 309, 1329
TaaI ACNGT 5 cut(s) 380, 685, 1072, 1339, 1467
TaiI ACGT 3 cut(s) 286, 699, 1013
TaqI TCGA 9 cut(s) 45, 54, 160, 230, 415, 452, 991, 1397, 1443
TaqII GACCGA 1 cut(s) 934
TasI AATT 8 cut(s) 41, 181, 232, 1046, 1054, 1212, 1445, 1492
TfiI GAWTC 9 cut(s) 449, 709, 766, 1078, 1244, 1267, 1292, 1394, 1507
Tru1I TTAA 8 cut(s) 342, 729, 789, 933, 1215, 1275, 1535, 1555
Tru9I TTAA 8 cut(s) 342, 729, 789, 933, 1215, 1275, 1535, 1555
TscAI CASTG 3 cut(s) 661, 1077, 1529
TseFI GTSAC 2 cut(s) 578, 810
TseI GCWGC 8 cut(s) 198, 254, 389, 392, 496, 937, 1353, 1519
Tsp45I GTSAC 2 cut(s) 578, 810
TspDTI ATGAA 6 cut(s) 126, 314, 540, 1056, 1076, 1178
TspRI CASTG 3 cut(s) 661, 1077, 1529
VspI ATTAAT 1 cut(s) 1275
XapI RAATTY 3 cut(s) 41, 232, 1492
XceI RCATGY 1 cut(s) 1035
XmiI GTMKAC 1 cut(s) 963
XspI CTAG 3 cut(s) 273, 438, 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.