Rw4G024100

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007739
Physical Location & Seq
Forward (+)
49979025 .. 49986802
7778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024100.1

Sequence Viewer

Length: 2241 bp
ATGGATTTTGGGGCCGACGACGACTGGAATTTCAGCGCGGAAGAGCTTGATTCCCTCGAAAGAGACGCTTTCCAGAAACTCTCTCAGCAACGCATCAACTCCGCTTCCACTTGTTCCTGTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTTCATTCAATCGCCACCACCCACACCAGTCGTCTTTACCCACCACCAGCAATGCCTTCGAAAGCTTCATTCCGATTTCTCTTCCTAACCAGGTGCCGCCGCCGCCTTTGTCTCCTGGAGCCAGAGTACTACCTTATTCTCTAGACGTTAAAGTAAACCCTGAAGTTGAACGGAAGCTCGCTGTCAAATTTTTTCTTCACGCTACTGGAAACATTGCTGCAAAATTTTCCTATGACCAGGCGTTGGTAGCTGCTTTCCGTAAGATCCCCAAAGCCACATGGAATGCAAAAGAAAGGTTATGGATGTTCCCTGTGTCTTCTTTGTCATCGGCAGAAAAAGTTCTTCATGAAGTATCAGGAGTCAATGTTGAGATAGAGAACTTAGATCCCTTAGTCCACCGGGCCATTGCTGCTGTGTCTGTTGTTCCAGATATTCGAGACCTGTATGACAGGATACCTAGCTTTATTGAATCAAAGCTCTTGGGATTTCAGCGAGAAGGTGTAAGGTTTATCTTGCAGCATGGAGGGCGTGCATTCCTTGCTGATGAAATGGGACTGGGGAAGACTTTACAGGCTATTGCTGTGGCTTCCTGCATTCGTGACTCATGGCCTGTTCTTATACTCACACCATCTTCATTGCGTCTGCAATGGGCCTCTATGATTCAACAATGGATGAACATTCCTCCATCAGATATTAGTGTTGTTTTGTCTCAATGTGGGGGTTCAAACAGAGCTGGATATACATTAGTATCCTCAAGTTCCAAAGGGACCATTCATCTTGATGGCCTATTTAACATAATCTCTTATGACATAGTCCCTAAACTACAGAATCTGCTGATGGCATCAGATTTTAAGATTGTGATTGCAGATGAGTCGCACTTTTTGAAAAATGCTCAAGCAAAAAGGACAACTGCTTCCCTGCCTGTCATCAAGAAGGCTCAATATGCAATACTGTTAAGTGGAACTCCTGCATTGTCCCGACCGATCGAACTATTTACGCAGCTGGAAGCCTTGTATCCTGATGTATACAAAAATGTTCATGAATATGGCAAACGATATTGCAAGGGTGGAACATTTGGAATGTATCAAGGTGCAAGTAACCATGAAGAATTGCATAATTTGTTGAAGGCAACAGTGATGATTCGGAGACTCAAAAATGATGTACTCTCTGAACTTCCTGTGAAGCGCAGACAACAGGTCTTCCTAGATTTGGCTGAAAAGGACATGAAACAAATCAATGCTTTATTTCGTGAGTTGGAGGTGGTAAAGCTGAAAATTAAGGCCTGCAAATCAAAAGAAGAAGTTGATTCACTTAAATTTAATGAGAAGAATCTTATCAATAAGATTTATACTGATTCAGCGGAGGCCAAGATCCCAGCAGTGCTGGATTACCTGGGAACTGTCATCGAGGCTGGTTGCAAGTTTCTAGTATTTGCACATCATCAATCCATGATCGATGCAATATATCAGTTTCTTCTGAAGAAGAAAGTGAGTTGTATTCGAATTGATGGCAGTATACCTACAGTAGAGAGGCAAGCATATGTTACACAGTTTCAAGAAAAAGATTCTGTCAAGGCAGCAGTGCTATCTATCAAAGCCGGAGGTGTGGGATTAACTTTAACAGCTGCAAGCACTGTAATATTTGCAGAATTGTCATGGACTCCTGGTGACCTAATTCAAGCTGAAGATCGTGCTCACAGAATTGGCCAGGTGTCCTCGGTCAATGTATACTACCTTCTAGCGAACGACACAGTTGATGACATCATATGGGATGTTGTTCAGAGCAAGTTGGAAAATCTGGGACAGATGCTGGATGGCCATGAGAATTCGTTGGAAGTTTCAGCCAGCCAGCCGCGAAATAGCCCTGCAAAGCCGAAAAATAGCCCTGCCAAGCTGAAATATAGCCCTGCCAAGCCGAAATATAGCCCTGCAAAGCAGAAAACACTGGATTCTTTCTTGAAAGTTTCAACCAACCAGTCAAACATCAGCCCAGGAAAGCAAAAAACACTTGATTCCTTCTTGAAGCGTTGCAACAACAGTGAAGACCATGAAATTGAGCCCAAATTTAAATACCCAAGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000733 GO:0003674 GO:0003676 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0031297 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031593 GO:0031974 GO:0031981 GO:0032392 GO:0033554 GO:0034641 GO:0034645 GO:0036292 GO:0036310 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048478 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070530 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0097159 GO:0097617 GO:0140030 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

746

Amino Acids

82.87

Weight (kDa)

8.86

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 215 - 486 6.1e-34 SNF2-related domain
Helicase_C PF00271 513 - 621 3.5e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 400
AccI GTMKAC 3 cut(s) 1182, 1672, 1884
AccII CGCG 2 cut(s) 38, 2011
AciI CCGC 7 cut(s) 38, 102, 254, 257, 260, 1517, 2009
AclWI GGATC 3 cut(s) 415, 536, 1522
AcoI YGGCCR 2 cut(s) 1861, 1972
AcsI RAATTY 6 cut(s) 28, 344, 380, 1472, 1981, 2219
AcuI CTGAAG 3 cut(s) 339, 1655, 1860
AfaI GTAC 2 cut(s) 285, 1320
AfiI CCNNNNNNNGG 2 cut(s) 400, 1366
AhdI GACNNNNNGTC 1 cut(s) 1352
AjnI CCWGG 7 cut(s) 246, 271, 393, 1548, 1819, 1863, 2146
Alw21I GWGCWC 1 cut(s) 1852
Alw26I GTCTC 5 cut(s) 57, 273, 588, 870, 1297
AlwI GGATC 3 cut(s) 415, 536, 1522
AlwNI CAGNNNCTG 2 cut(s) 988, 1966
AoxI GGCC 9 cut(s) 12, 558, 764, 807, 940, 1437, 1521, 1861, 1972
ApeKI GCWGC 7 cut(s) 374, 407, 566, 673, 1156, 1733, 1781
ApoI RAATTY 6 cut(s) 28, 344, 380, 1472, 1981, 2219
Asp700I GAANNNNTTC 1 cut(s) 495
AspLEI GCGC 2 cut(s) 38, 1344
AspS9I GGNCC 4 cut(s) 12, 558, 807, 924
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 1835
AsuII TTCGAA 2 cut(s) 216, 1657
AvaII GGWCC 1 cut(s) 924
BaeI ACNNNNGTAYC 2 cut(s) 888, 921
BalI TGGCCA 2 cut(s) 1863, 1974
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 2217
BarI GAAGNNNNNNTAC 2 cut(s) 1875, 1907
BbsI GAAGAC 4 cut(s) 465, 725, 1348, 2205
Bbv12I GWGCWC 1 cut(s) 1852
BbvI GCAGC 7 cut(s) 361, 394, 553, 685, 1168, 1745, 1768
BccI CCATC 6 cut(s) 793, 850, 932, 988, 1658, 1964
BcgI CGANNNNNNTGC 4 cut(s) 196, 230, 1011, 1045
BciT130I CCWGG 7 cut(s) 248, 273, 395, 1550, 1821, 1865, 2148
BciVI GTATCC 3 cut(s) 603, 916, 1182
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 5 cut(s) 57, 273, 588, 870, 1297
BfaI CTAG 5 cut(s) 299, 615, 1361, 1583, 1895
BfmI CTRYAG 2 cut(s) 980, 1677
BfuI GTATCC 3 cut(s) 603, 916, 1182
BmcAI AGTACT 1 cut(s) 285
Bme1390I CCNGG 8 cut(s) 248, 273, 395, 557, 1550, 1821, 1865, 2148
Bme18I GGWCC 1 cut(s) 924
BmeRI GACNNNNNGTC 1 cut(s) 1352
BmgT120I GGNCC 4 cut(s) 12, 558, 807, 924
BmiI GGNNCC 4 cut(s) 13, 252, 277, 925
BmrFI CCNGG 8 cut(s) 248, 273, 395, 557, 1550, 1821, 1865, 2148
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 4 cut(s) 102, 1007, 1603, 1953
BmuI ACTGGG 1 cut(s) 722
BpiI GAAGAC 4 cut(s) 465, 725, 1348, 2205
BpmI CTGGAG 1 cut(s) 294
Bpu14I TTCGAA 2 cut(s) 216, 1657
BpuEI CTTGAG 2 cut(s) 895, 1035
BpuMI CCSGG 1 cut(s) 557
Bsa29I ATCGAT 1 cut(s) 1611
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 4 cut(s) 1549, 1872, 2146, 2231
BsaXI ACNNNNNCTCC 4 cut(s) 267, 297, 507, 537
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 1366
Bse1I ACTGG 6 cut(s) 29, 184, 367, 717, 2106, 2131
Bse3DI GCAATG 5 cut(s) 214, 369, 561, 791, 809
BseBI CCWGG 7 cut(s) 248, 273, 395, 1550, 1821, 1865, 2148
BseCI ATCGAT 1 cut(s) 1611
BseDI CCNNGG 4 cut(s) 1549, 1872, 2146, 2231
BseGI GGATG 4 cut(s) 465, 834, 1933, 1975
BseLI CCNNNNNNNGG 2 cut(s) 400, 1366
BseMI GCAATG 5 cut(s) 214, 369, 561, 791, 809
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 6 cut(s) 29, 184, 367, 717, 2106, 2131
BseXI GCAGC 7 cut(s) 361, 394, 553, 685, 1168, 1745, 1768
BseYI CCCAGC 1 cut(s) 1531
Bsh1236I CGCG 2 cut(s) 38, 2011
Bsh1285I CGRYCG 2 cut(s) 1139, 1143
BshFI GGCC 9 cut(s) 14, 560, 766, 809, 942, 1439, 1523, 1863, 1974
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 1611
BsiEI CGRYCG 2 cut(s) 1139, 1143
BsiHKAI GWGCWC 1 cut(s) 1852
BsiSI CCGG 2 cut(s) 556, 1755
BslFI GGGAC 5 cut(s) 723, 937, 956, 1117, 1971
BslI CCNNNNNNNGG 2 cut(s) 400, 1366
BsmAI GTCTC 5 cut(s) 57, 273, 588, 870, 1297
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 5 cut(s) 723, 937, 956, 1117, 1971
BsmI GAATGC 3 cut(s) 445, 689, 750
BsnI GGCC 9 cut(s) 14, 560, 766, 809, 942, 1439, 1523, 1863, 1974
Bso31I GGTCTC 1 cut(s) 588
Bsp119I TTCGAA 2 cut(s) 216, 1657
Bsp1286I GDGCHC 2 cut(s) 1852, 2217
Bsp143I GATC 6 cut(s) 420, 541, 1140, 1527, 1608, 1843
BspACI CCGC 7 cut(s) 38, 102, 254, 257, 260, 1517, 2009
BspANI GGCC 9 cut(s) 14, 560, 766, 809, 942, 1439, 1523, 1863, 1974
BspCNI CTCAG 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 1611
BspFNI CGCG 2 cut(s) 38, 2011
BspHI TCATGA 2 cut(s) 502, 1195
BspLI GGNNCC 4 cut(s) 13, 252, 277, 925
BspPI GGATC 3 cut(s) 415, 536, 1522
BspQI GCTCTTC 1 cut(s) 36
BspT104I TTCGAA 2 cut(s) 216, 1657
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 588
BsrDI GCAATG 5 cut(s) 214, 369, 561, 791, 809
BsrI ACTGG 6 cut(s) 29, 184, 367, 717, 2106, 2131
BssECI CCNNGG 4 cut(s) 1549, 1872, 2146, 2231
BssMI GATC 6 cut(s) 420, 541, 1140, 1527, 1608, 1843
BssNAI GTATAC 3 cut(s) 1183, 1673, 1885
BssT1I CCWWGG 1 cut(s) 2231
Bst1107I GTATAC 3 cut(s) 1183, 1673, 1885
Bst2UI CCWGG 7 cut(s) 248, 273, 395, 1550, 1821, 1865, 2148
Bst4CI ACNGT 8 cut(s) 1110, 1291, 1558, 1681, 1707, 1792, 1909, 2195
Bst6I CTCTTC 2 cut(s) 36, 243
BstAPI GCANNNNNTGC 1 cut(s) 695
BstBI TTCGAA 2 cut(s) 216, 1657
BstC8I GCNNGC 7 cut(s) 336, 687, 1441, 1692, 1786, 2002, 2006
BstDEI CTNAG 3 cut(s) 84, 538, 547
BstEII GGTNACC 1 cut(s) 1823
BstF5I GGATG 4 cut(s) 465, 834, 1933, 1975
BstFNI CGCG 2 cut(s) 38, 2011
BstHHI GCGC 2 cut(s) 38, 1344
BstKTI GATC 6 cut(s) 423, 544, 1143, 1530, 1611, 1846
BstMAI GTCTC 5 cut(s) 57, 273, 588, 870, 1297
BstMBI GATC 6 cut(s) 420, 541, 1140, 1527, 1608, 1843
BstMCI CGRYCG 2 cut(s) 1139, 1143
BstMWI GCNNNNNNNGC 6 cut(s) 259, 404, 566, 682, 695, 1100
BstNI CCWGG 7 cut(s) 248, 273, 395, 1550, 1821, 1865, 2148
BstPI GGTNACC 1 cut(s) 1823
BstSCI CCNGG 8 cut(s) 246, 271, 393, 555, 1548, 1819, 1863, 2146
BstSFI CTRYAG 2 cut(s) 980, 1677
BstUI CGCG 2 cut(s) 38, 2011
BstV1I GCAGC 7 cut(s) 361, 394, 553, 685, 1168, 1745, 1768
BstV2I GAAGAC 4 cut(s) 465, 725, 1348, 2205
BstX2I RGATCY 3 cut(s) 420, 541, 1527
BstYI RGATCY 3 cut(s) 420, 541, 1527
BstZ17I GTATAC 3 cut(s) 1183, 1673, 1885
Bsu15I ATCGAT 1 cut(s) 1611
BsuI GTATCC 3 cut(s) 603, 916, 1182
BsuRI GGCC 9 cut(s) 14, 560, 766, 809, 942, 1439, 1523, 1863, 1974
BsuTUI ATCGAT 1 cut(s) 1611
BtsCI GGATG 4 cut(s) 465, 834, 1933, 1975
BtsI GCAGTG 2 cut(s) 1542, 1743
BtsIMutI CAGTG 6 cut(s) 1296, 1542, 1743, 1788, 2099, 2200
Cac8I GCNNGC 7 cut(s) 336, 687, 1441, 1692, 1786, 2002, 2006
CaiI CAGNNNCTG 2 cut(s) 988, 1966
CciI TCATGA 2 cut(s) 502, 1195
CfoI GCGC 2 cut(s) 38, 1344
Cfr13I GGNCC 4 cut(s) 12, 558, 807, 924
ClaI ATCGAT 1 cut(s) 1611
CseI GACGC 2 cut(s) 74, 785
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 2 cut(s) 284, 1319
CviQI GTAC 2 cut(s) 284, 1319
DdeI CTNAG 3 cut(s) 84, 538, 547
DpnI GATC 6 cut(s) 422, 543, 1142, 1529, 1610, 1845
DpnII GATC 6 cut(s) 420, 541, 1140, 1527, 1608, 1843
DraI TTTAAA 1 cut(s) 2224
DriI GACNNNNNGTC 1 cut(s) 1352
EaeI YGGCCR 2 cut(s) 1861, 1972
Eam1104I CTCTTC 2 cut(s) 36, 243
Eam1105I GACNNNNNGTC 1 cut(s) 1352
EarI CTCTTC 2 cut(s) 36, 243
Eco130I CCWWGG 1 cut(s) 2231
Eco147I AGGCCT 1 cut(s) 1439
Eco24I GRGCYC 1 cut(s) 2217
Eco31I GGTCTC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 924
Eco57I CTGAAG 3 cut(s) 339, 1655, 1860
Eco91I GGTNACC 1 cut(s) 1823
EcoO65I GGTNACC 1 cut(s) 1823
EcoRI GAATTC 1 cut(s) 1981
EcoRII CCWGG 7 cut(s) 246, 271, 393, 1548, 1819, 1863, 2146
EcoT14I CCWWGG 1 cut(s) 2231
EcoT38I GRGCYC 1 cut(s) 2217
ErhI CCWWGG 1 cut(s) 2231
Esp3I CGTCTC 1 cut(s) 57
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 5 cut(s) 723, 937, 956, 1117, 1971
FauNDI CATATG 2 cut(s) 1696, 1922
FblI GTMKAC 3 cut(s) 1182, 1672, 1884
FokI GGATG 4 cut(s) 472, 841, 1940, 1982
FriOI GRGCYC 1 cut(s) 2217
FspBI CTAG 5 cut(s) 299, 615, 1361, 1583, 1895
GlaI GCGC 2 cut(s) 37, 1343
GsaI CCCAGC 1 cut(s) 1535
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 9 cut(s) 14, 560, 766, 809, 942, 1439, 1523, 1863, 1974
HapII CCGG 2 cut(s) 556, 1755
HgaI GACGC 2 cut(s) 74, 785
HhaI GCGC 2 cut(s) 38, 1344
Hin6I GCGC 2 cut(s) 36, 1342
HinP1I GCGC 2 cut(s) 36, 1342
HindIII AAGCTT 1 cut(s) 220
HpaII CCGG 2 cut(s) 556, 1755
HphI GGTGA 1 cut(s) 1835
Hpy166II GTNNAC 5 cut(s) 313, 553, 1183, 1673, 1885
Hpy188I TCNGA 7 cut(s) 231, 847, 1003, 1302, 1327, 1635, 1938
Hpy8I GTNNAC 5 cut(s) 313, 553, 1183, 1673, 1885
Hpy99I CGWCG 2 cut(s) 20, 23
HpyAV CCTTC 6 cut(s) 223, 647, 1084, 1276, 1901, 2182
HpyCH4III ACNGT 8 cut(s) 1110, 1291, 1558, 1681, 1707, 1792, 1909, 2195
HpyCH4IV ACGT 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 6 cut(s) 259, 404, 566, 682, 695, 1100
HpyF3I CTNAG 3 cut(s) 84, 538, 547
HpySE526I ACGT 1 cut(s) 303
HspAI GCGC 2 cut(s) 36, 1342
Kzo9I GATC 6 cut(s) 420, 541, 1140, 1527, 1608, 1843
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 7 cut(s) 361, 394, 553, 685, 1168, 1745, 1768
LweI GCATC 4 cut(s) 102, 1007, 1603, 1953
MabI ACCWGGT 1 cut(s) 246
MaeI CTAG 5 cut(s) 299, 615, 1361, 1583, 1895
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 4 cut(s) 755, 1253, 1699, 1823
MalI GATC 6 cut(s) 422, 543, 1142, 1529, 1610, 1845
MboI GATC 6 cut(s) 420, 541, 1140, 1527, 1608, 1843
MflI RGATCY 3 cut(s) 420, 541, 1527
MhlI GDGCHC 2 cut(s) 1852, 2217
MlsI TGGCCA 2 cut(s) 1863, 1974
MluNI TGGCCA 2 cut(s) 1863, 1974
MlyI GAGTC 5 cut(s) 525, 752, 1037, 1299, 1810
MmeI TCCRAC 3 cut(s) 1392, 1926, 1968
Mox20I TGGCCA 2 cut(s) 1863, 1974
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 2 cut(s) 1863, 1974
MslI CAYNNNNRTG 2 cut(s) 936, 1200
Msp20I TGGCCA 2 cut(s) 1863, 1974
MspA1I CMGCKG 3 cut(s) 1159, 1517, 1781
MspI CCGG 2 cut(s) 556, 1755
MspR9I CCNGG 8 cut(s) 248, 273, 395, 557, 1550, 1821, 1865, 2148
Mva1269I GAATGC 3 cut(s) 445, 689, 750
MvaI CCWGG 7 cut(s) 248, 273, 395, 1550, 1821, 1865, 2148
MvnI CGCG 2 cut(s) 38, 2011
MwoI GCNNNNNNNGC 6 cut(s) 259, 404, 566, 682, 695, 1100
NciI CCSGG 1 cut(s) 557
NdeI CATATG 2 cut(s) 1696, 1922
NdeII GATC 6 cut(s) 420, 541, 1140, 1527, 1608, 1843
NlaIV GGNNCC 4 cut(s) 13, 252, 277, 925
NmuCI GTSAC 2 cut(s) 755, 1823
NspV TTCGAA 2 cut(s) 216, 1657
PagI TCATGA 2 cut(s) 502, 1195
PceI AGGCCT 1 cut(s) 1439
PciSI GCTCTTC 1 cut(s) 36
PctI GAATGC 3 cut(s) 445, 689, 750
PdmI GAANNNNTTC 1 cut(s) 495
PflFI GACNNNGTC 1 cut(s) 968
PflMI CCANNNNNTGG 1 cut(s) 400
PfoI TCCNGGA 1 cut(s) 271
Ple19I CGATCG 1 cut(s) 1143
PleI GAGTC 5 cut(s) 524, 752, 1036, 1299, 1810
PpsI GAGTC 5 cut(s) 524, 752, 1036, 1299, 1810
Psp6I CCWGG 7 cut(s) 246, 271, 393, 1548, 1819, 1863, 2146
PspEI GGTNACC 1 cut(s) 1823
PspFI CCCAGC 1 cut(s) 1531
PspGI CCWGG 7 cut(s) 246, 271, 393, 1548, 1819, 1863, 2146
PspN4I GGNNCC 4 cut(s) 13, 252, 277, 925
PspPI GGNCC 4 cut(s) 12, 558, 807, 924
PstNI CAGNNNCTG 2 cut(s) 988, 1966
PsuI RGATCY 3 cut(s) 420, 541, 1527
PsyI GACNNNGTC 1 cut(s) 968
PvuI CGATCG 1 cut(s) 1143
PvuII CAGCTG 2 cut(s) 1159, 1781
RsaI GTAC 2 cut(s) 285, 1320
RsaNI GTAC 2 cut(s) 284, 1319
RseI CAYNNNNRTG 2 cut(s) 936, 1200
SapI GCTCTTC 1 cut(s) 36
Sau3AI GATC 6 cut(s) 420, 541, 1140, 1527, 1608, 1843
Sau96I GGNCC 4 cut(s) 12, 558, 807, 924
ScaI AGTACT 1 cut(s) 285
SchI GAGTC 5 cut(s) 525, 752, 1037, 1299, 1810
ScrFI CCNGG 8 cut(s) 248, 273, 395, 557, 1550, 1821, 1865, 2148
SduI GDGCHC 2 cut(s) 1852, 2217
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 4 cut(s) 102, 1007, 1603, 1953
SfcI CTRYAG 2 cut(s) 980, 1677
SfuI TTCGAA 2 cut(s) 216, 1657
SinI GGWCC 1 cut(s) 924
SmiI ATTTAAAT 1 cut(s) 2224
SmiMI CAYNNNNRTG 2 cut(s) 936, 1200
SmlI CTYRAG 2 cut(s) 910, 1050
SmoI CTYRAG 2 cut(s) 910, 1050
SseBI AGGCCT 1 cut(s) 1439
SsiI CCGC 7 cut(s) 38, 102, 254, 257, 260, 1517, 2009
SspI AATATT 1 cut(s) 1797
SspMI CTAG 5 cut(s) 299, 615, 1361, 1583, 1895
StuI AGGCCT 1 cut(s) 1439
StyD4I CCNGG 8 cut(s) 246, 271, 393, 555, 1548, 1819, 1863, 2146
StyI CCWWGG 1 cut(s) 2231
SwaI ATTTAAAT 1 cut(s) 2224
TaaI ACNGT 8 cut(s) 1110, 1291, 1558, 1681, 1707, 1792, 1909, 2195
TaiI ACGT 1 cut(s) 306
TaqI TCGA 7 cut(s) 57, 216, 592, 1143, 1563, 1611, 1657
TaqII GACCGA 2 cut(s) 1153, 1864
TatI WGTACW 2 cut(s) 283, 1318
TauI GCSGC 4 cut(s) 256, 259, 262, 2011
TscAI CASTG 6 cut(s) 1296, 1542, 1743, 1795, 2106, 2200
TseFI GTSAC 2 cut(s) 755, 1823
TseI GCWGC 7 cut(s) 374, 407, 566, 673, 1156, 1733, 1781
Tsp45I GTSAC 2 cut(s) 755, 1823
TspGWI ACGGA 2 cut(s) 343, 404
TspRI CASTG 6 cut(s) 1296, 1542, 1743, 1795, 2106, 2200
Tth111I GACNNNGTC 1 cut(s) 968
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 924
XapI RAATTY 6 cut(s) 28, 344, 380, 1472, 1981, 2219
XbaI TCTAGA 1 cut(s) 298
XmiI GTMKAC 3 cut(s) 1182, 1672, 1884
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 5 cut(s) 299, 615, 1361, 1583, 1895
ZrmI AGTACT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.