Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Forward (+)

19528409 .. 19534015

Gene Structure 5607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1208000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2649 bp

ATGACTCTCATGCCCAGTCGTCAACTTTACCCTACGAGCTTGTTCGACTCGTTCCAGAGCTCCTTGTCGAAATTCAATAGCGCCCATATCCAGTTCTTCAGGTATGGCTCCTCAATTCCTTTCAAGAACCACACTTTCTATACCACCCACTGCATTATCAGCTCTCCTTTAAACCCTGACCCAAACCCAATGAGGAAATCGAATTTTGTTGGGAGAAATCGACCCGTTTATCAGTGTAAACTTAAGAGGAATTTGTGTAGTAGTAGTTGGATTAATAAATGGAATGAATCCCACAAGCATAATCGACCAAAACCGCCTCGGGCCGTGTTGGATTATCAGAGTAGTGAAGGTGGGAATGGTTCAGGAAATGGTGGTGGTAGTACAATGGAGAAGATAGTGGAGAAATTGAAGAAGTTTGGGTACGTTGATGATAGTAATGACAGTAAAGGGGAAGTAAGGGGGAGAGTGATTGAGAAGGGTTCAGTGGAGGATATATTTTATGTTGAGGAAGGAATGCTGCCAAATTCGAGGGGTAGGTTCTCGGCTGATTCGCCATTGGGGGTAGAGAATGTGTTTGGAAGTGATGGGAAGGTAAAGTTTCCATGGGAAAAGCCTGCAGAGGAAGAGAAGCAGGAGGAGGGTTCGGTGAGGAGGAAGAGTAGGACTTCAGTAGCGGAATTGACACTTCCAGAGTCTGAGTTGAGGAGGCTGAGGAATTTGACATTTCAGAAGAAGCACAAAACTAGGATTGGAGGTGCTGGTGTTACCCAAGCCGTAGTGGACATGATCCACGAGAGATGGAAGACTTCGGAGATTGTGAGATTGAAAGTTGAAGGTCCACCGGCTCTTAACATGAAGAGAATGCATGAGATATTGGAGCGGAAAACTGGTGGTTTGGTGGTCTGGAGGTCGGGCACATCTCTTTCTTTATACAGAGGTGTGAGCTATGAGGTTCCTTCAGTGCAACTAAACAAGCGGATATACAAGAAAAATGACAGCTCTTCGGCATCTTTACCAACTGTTGCTGATAAATCTGTGGGAGACTTTGTTGAGATTGCTTCTTATGGTAATGTAAATACACCCCAAGAAAAGCTGGAGAGTACTTTCTTGGAGAAGAAAGACACAGAACAATTGCCAGAAGTGAAGTATGAAGATGAAGTAGACGAACTTTTAGATAGTTTAGGCCCCAGATTCAAAGATTGGCCCGGATGTGATCCATTACCTGTAGATGCAGATATGCTTCCAGGGATAGTTCCTGGTTACGAACCACCCTTCAGAGTACTTCCATATGGTGTGCGATCTTCCCTTGGTTTACAAGAGGCAACATCTTTGAGAAGGCTGGCGAGGGTTCTTCCACCACATTTTGCTTTAGGTCGAAGCAGACAGCTCCAGGGTCTAGCAGTGGCCATGGCTAAATTATGGGAACGAAGTTTGATTTCAAAGATTGCACTGAAACGTGGTGTCCAGCTGACTACTAGCGAGCGAATGGCTGAAGACATCAAGAGATTGACTGGGGGTGTGCTGCTATCTCGAAACAAGGACTTCTTGGTCTTCTATAGGGGGAAGAATTTTTTGTCTCCAGAGGTCACTGAAGCGTTACTGGAAAGGGAGAGATTGGCGAAATCCCTTCAAGATGAAGAGGAGCAGGCAAGGTTAAGAGCTTCAGCCATGGTCATACCAAATGTTGAACAAGCTCAACACTTTGGTACCGCGGGTACACTTGGGGAGACCTTGGATGCAGATGCTAAGTGGGGAAAGAGGATGGATAATCATCATAAGAAAAAAGTGATGCAAGAAGCAGACATATTAAGGCACTCCAATTTGTGCAGAAAGCTTGAACGAAAGCTTGCCTTTGCTGAAAGAAAGTTAATGAAAGCTGAACAAGCCTTATCTAAGGTAGAGGAGTGTTTGAAACCATCTATGCGGCAAGCTGACCCAGACAGCATTACTGATGAAGAGAGGTTTATGTTTCGTAAGCTTGGTTTACGGATGAAAGCTTTCTTACTTCTTGGTAGACGTGGAGTGTTTGATGGTACAGTGGAGAACATGCATTTACACTGGAAATACCGGGAATTGGTCAAGATAATGGTGAATGCTAAAAGTTTTGAGCAGGTAAAAAAAATTGCATTAGCACTAGAAGCTGAGAGCGGAGGTGTCTTGGTTTCAGTGGATAAAGTTTCCAAAAAGTTTGCCATAATTGTGTACCGGGGAAAGGACTATCACCGACCTTCTACATTGAGGCCAAAGAATCTCTTGACAAAAAGGAAAGCATTGGCACGCTCTATTGAGATTCAACGGCAGGAGGCTCTTCTAAAACATATTTCAGTGGTGCAGAGTAAAGTGGACACACTTAGATCCGAAATAGAACAAATGGATGCTGTGAAAGAGCATGGAGATGAAGTATTGTACGACAAATTAGATTCTTCATATCCGACTGATGATGATGATGATTCCGAGGAAGAAGATGTTTATCTTGAAACATATAGCGCAGAAAATGATGGTGAAGATGAAGGCAATTACTCAACTCACGATCCTCACCTGGAATCCATTTTTCCTTTTAATATCCAGAATGAGGATTCTCAAACGGAATTGGAAGTTCCTCGACAACATTTGTATGCTGTGCCAGAGGGTTCACTAGACAATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

883

Amino Acids

100.13

Weight (kDa)

8.47

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	229 - 312	1.2e-19	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	439 - 520	3.9e-12	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	649 - 736	1.3e-18	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1547
Acc36I	ACCTGC	1 cut(s)	2101
Acc65I	GGTACC	1 cut(s)	1706
AccB1I	GGYRCC	1 cut(s)	1706
AccBSI	CCGCTC	2 cut(s)	880, 2148
AccI	GTMKAC	2 cut(s)	1161, 2014
AccII	CGCG	1 cut(s)	1712
AciI	CCGC	8 cut(s)	314, 674, 880, 976, 1710, 1712, 1924, 2148
AclWI	GGATC	4 cut(s)	781, 1208, 2349, 2525
AcoI	YGGCCR	1 cut(s)	1404
AcsI	RAATTY	6 cut(s)	71, 202, 250, 523, 715, 1567
AcuI	CTGAAG	7 cut(s)	82, 651, 942, 1258, 1512, 1611, 1647
AfaI	GTAC	9 cut(s)	382, 422, 1102, 1281, 1708, 1717, 2035, 2204, 2408
AfiI	CCNNNNNNNGG	3 cut(s)	2074, 2212, 2572
AflII	CTTAAG	1 cut(s)	242
AjiI	CACGTC	1 cut(s)	2018
AjnI	CCWGG	4 cut(s)	1243, 1255, 1389, 2538
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	3 cut(s)	1035, 1581, 1721
AlwI	GGATC	4 cut(s)	781, 1208, 2349, 2525
AlwNI	CAGNNNCTG	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	5 cut(s)	321, 1183, 1202, 1404, 2240
ApeKI	GCWGC	2 cut(s)	517, 1522
ApoI	RAATTY	6 cut(s)	71, 202, 250, 523, 715, 1567
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	1997
Asp718I	GGTACC	1 cut(s)	1706
AspLEI	GCGC	2 cut(s)	83, 2489
AspS9I	GGNCC	4 cut(s)	321, 836, 1184, 1203
AsuC2I	CCSGG	3 cut(s)	1206, 2069, 2207
AsuHPI	GGTGA	5 cut(s)	658, 2101, 2213, 2513, 2528
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	836
BaeGI	GKGCMC	1 cut(s)	917
BaeI	ACNNNNGTAYC	2 cut(s)	1690, 1723
BalI	TGGCCA	1 cut(s)	1406
BanI	GGYRCC	1 cut(s)	1706
BanII	GRGCYC	1 cut(s)	62
BarI	GAAGNNNNNNTAC	2 cut(s)	404, 436
BauI	CACGAG	1 cut(s)	791
BbsI	GAAGAC	3 cut(s)	809, 1500, 1543
Bbv12I	GWGCWC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	2 cut(s)	504, 1509
BccI	CCATC	6 cut(s)	578, 792, 1756, 1924, 2024, 2492
BceAI	ACGGC	3 cut(s)	308, 758, 2312
BciT130I	CCWGG	4 cut(s)	1245, 1257, 1391, 2540
BcnI	CCSGG	3 cut(s)	1206, 2069, 2207
BcoDI	GTCTC	3 cut(s)	1035, 1581, 1721
BfaI	CTAG	5 cut(s)	744, 1397, 1476, 2135, 2636
BfmI	CTRYAG	3 cut(s)	615, 1224, 1555
BfoI	RGCGCY	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	2101
BisI	GCNGC	3 cut(s)	518, 1523, 1925
BlsI	GCNGC	3 cut(s)	519, 1524, 1926
BmcAI	AGTACT	2 cut(s)	1102, 1281
Bme1390I	CCNGG	7 cut(s)	1206, 1245, 1257, 1391, 2069, 2207, 2540
Bme18I	GGWCC	1 cut(s)	836
BmeT110I	CYCGRG	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	2018
BmgT120I	GGNCC	4 cut(s)	321, 836, 1184, 1203
BmiI	GGNNCC	4 cut(s)	109, 954, 1186, 1708
BmrFI	CCNGG	7 cut(s)	1206, 1245, 1257, 1391, 2069, 2207, 2540
BmrI	ACTGGG	2 cut(s)	9, 1521
BmsI	GCATC	6 cut(s)	1016, 1219, 1726, 1732, 1779, 2365
BmuI	ACTGGG	2 cut(s)	9, 1521
BpiI	GAAGAC	3 cut(s)	809, 1500, 1543
BpmI	CTGGAG	4 cut(s)	925, 1115, 1373, 1563
Bpu10I	CCTNAGC	1 cut(s)	710
BpuMI	CCSGG	3 cut(s)	1206, 2069, 2207
BsaBI	GATNNNNATC	2 cut(s)	1770, 2469
BsaI	GGTCTC	1 cut(s)	1721
BsaXI	ACNNNNNCTCC	6 cut(s)	643, 673, 1032, 1062, 2385, 2415
Bsc4I	CCNNNNNNNGG	3 cut(s)	2074, 2212, 2572
Bse118I	RCCGGY	1 cut(s)	841
Bse1I	ACTGG	6 cut(s)	15, 91, 892, 1516, 1605, 2063
Bse8I	GATNNNNATC	2 cut(s)	1770, 2469
BseBI	CCWGG	4 cut(s)	1245, 1257, 1391, 2540
BseGI	GGATG	5 cut(s)	1214, 1741, 1767, 1995, 2380
BseJI	GATNNNNATC	2 cut(s)	1770, 2469
BseLI	CCNNNNNNNGG	3 cut(s)	2074, 2212, 2572
BseMII	CTCAG	3 cut(s)	687, 701, 2133
BseNI	ACTGG	6 cut(s)	15, 91, 892, 1516, 1605, 2063
BseRI	GAGGAG	6 cut(s)	100, 650, 664, 718, 1655, 1916
BseSI	GKGCMC	1 cut(s)	917
BseXI	GCAGC	2 cut(s)	504, 1509
BsgI	GTGCAG	2 cut(s)	1846, 2351
Bsh1236I	CGCG	1 cut(s)	1712
BshFI	GGCC	5 cut(s)	323, 1185, 1204, 1406, 2242
BshNI	GGYRCC	1 cut(s)	1706
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	842, 1206, 2068, 2206
BslI	CCNNNNNNNGG	3 cut(s)	2074, 2212, 2572
BsmAI	GTCTC	3 cut(s)	1035, 1581, 1721
BsmI	GAATGC	3 cut(s)	519, 867, 2098
BsnI	GGCC	5 cut(s)	323, 1185, 1204, 1406, 2242
Bso31I	GGTCTC	1 cut(s)	1721
BsoBI	CYCGRG	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	62, 917
Bsp143I	GATC	5 cut(s)	786, 1213, 1298, 2354, 2530
Bsp19I	CCATGG	3 cut(s)	602, 1407, 1668
BspACI	CCGC	8 cut(s)	314, 674, 880, 976, 1710, 1712, 1924, 2148
BspANI	GGCC	5 cut(s)	323, 1185, 1204, 1406, 2242
BspCNI	CTCAG	3 cut(s)	688, 702, 2134
BspFNI	CGCG	1 cut(s)	1712
BspLI	GGNNCC	4 cut(s)	109, 954, 1186, 1708
BspMAI	CTGCAG	1 cut(s)	619
BspMI	ACCTGC	1 cut(s)	2101
BspPI	GGATC	4 cut(s)	781, 1208, 2349, 2525
BspQI	GCTCTTC	2 cut(s)	1006, 2313
BspT107I	GGYRCC	1 cut(s)	1706
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	1721
BsrBI	CCGCTC	2 cut(s)	880, 2148
BsrFI	RCCGGY	1 cut(s)	841
BsrI	ACTGG	6 cut(s)	15, 91, 892, 1516, 1605, 2063
BssAI	RCCGGY	1 cut(s)	841
BssMI	GATC	5 cut(s)	786, 1213, 1298, 2354, 2530
BssSI	CACGAG	1 cut(s)	791
BssT1I	CCWWGG	5 cut(s)	602, 1306, 1407, 1668, 1731
Bst2BI	CACGAG	1 cut(s)	791
Bst2UI	CCWGG	4 cut(s)	1245, 1257, 1391, 2540
Bst4CI	ACNGT	3 cut(s)	443, 1021, 2038
Bst6I	CTCTTC	7 cut(s)	618, 650, 851, 1006, 1632, 1950, 2313
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	7 cut(s)	615, 1341, 1481, 1647, 1848, 1929, 2278
BstDEI	CTNAG	6 cut(s)	696, 710, 1746, 1893, 2142, 2351
BstDSI	CCRYGG	4 cut(s)	602, 1407, 1668, 1710
BstF5I	GGATG	5 cut(s)	1214, 1741, 1767, 1995, 2380
BstFNI	CGCG	1 cut(s)	1712
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 2489
BstKTI	GATC	5 cut(s)	789, 1216, 1301, 2357, 2533
BstMAI	GTCTC	3 cut(s)	1035, 1581, 1721
BstMBI	GATC	5 cut(s)	786, 1213, 1298, 2354, 2530
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 1883, 2138
BstNI	CCWGG	4 cut(s)	1245, 1257, 1391, 2540
BstNSI	RCATGY	1 cut(s)	2050
BstSCI	CCNGG	7 cut(s)	1204, 1243, 1255, 1389, 2067, 2205, 2538
BstSFI	CTRYAG	3 cut(s)	615, 1224, 1555
BstSLI	GKGCMC	1 cut(s)	917
BstUI	CGCG	1 cut(s)	1712
BstV1I	GCAGC	2 cut(s)	504, 1509
BstV2I	GAAGAC	3 cut(s)	809, 1500, 1543
BstX2I	RGATCY	1 cut(s)	2354
BstYI	RGATCY	1 cut(s)	2354
BsuRI	GGCC	5 cut(s)	323, 1185, 1204, 1406, 2242
BtgI	CCRYGG	4 cut(s)	602, 1407, 1668, 1710
BtrI	CACGTC	1 cut(s)	2018
BtsCI	GGATG	5 cut(s)	1214, 1741, 1767, 1995, 2380
BtsI	GCAGTG	2 cut(s)	148, 1407
BveI	ACCTGC	1 cut(s)	2101
Cac8I	GCNNGC	7 cut(s)	615, 1341, 1481, 1647, 1848, 1929, 2278
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	2 cut(s)	83, 2489
Cfr10I	RCCGGY	1 cut(s)	841
Cfr13I	GGNCC	4 cut(s)	321, 836, 1184, 1203
Cfr42I	CCGCGG	1 cut(s)	1713
Csp6I	GTAC	9 cut(s)	381, 421, 1101, 1280, 1707, 1716, 2034, 2203, 2407
CviAII	CATG	9 cut(s)	10, 603, 784, 853, 866, 1408, 1669, 2047, 2390
CviQI	GTAC	9 cut(s)	381, 421, 1101, 1280, 1707, 1716, 2034, 2203, 2407
DdeI	CTNAG	6 cut(s)	696, 710, 1746, 1893, 2142, 2351
DpnI	GATC	5 cut(s)	788, 1215, 1300, 2356, 2532
DpnII	GATC	5 cut(s)	786, 1213, 1298, 2354, 2530
DraI	TTTAAA	1 cut(s)	171
DrdI	GACNNNNNNGTC	1 cut(s)	1547
DseDI	GACNNNNNNGTC	1 cut(s)	1547
EaeI	YGGCCR	1 cut(s)	1404
Eam1104I	CTCTTC	7 cut(s)	618, 650, 851, 1006, 1632, 1950, 2313
EarI	CTCTTC	7 cut(s)	618, 650, 851, 1006, 1632, 1950, 2313
Ecl136II	GAGCTC	1 cut(s)	60
Eco130I	CCWWGG	5 cut(s)	602, 1306, 1407, 1668, 1731
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	1721
Eco47I	GGWCC	1 cut(s)	836
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	7 cut(s)	82, 651, 942, 1258, 1512, 1611, 1647
Eco88I	CYCGRG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	1184
EcoRII	CCWGG	4 cut(s)	1243, 1255, 1389, 2538
EcoT14I	CCWWGG	5 cut(s)	602, 1306, 1407, 1668, 1731
EcoT22I	ATGCAT	2 cut(s)	867, 2052
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	5 cut(s)	602, 1306, 1407, 1668, 1731
FaeI	CATG	9 cut(s)	13, 606, 787, 856, 869, 1411, 1672, 2050, 2393
FalI	AAGNNNNNCTT	6 cut(s)	1529, 1561, 1835, 1867, 2237, 2269
FatI	CATG	9 cut(s)	9, 602, 783, 852, 865, 1407, 1668, 2046, 2389
FauI	CCCGC	1 cut(s)	1705
FauNDI	CATATG	1 cut(s)	1288
FblI	GTMKAC	2 cut(s)	1161, 2014
Fnu4HI	GCNGC	3 cut(s)	518, 1523, 1925
FokI	GGATG	5 cut(s)	1221, 1748, 1774, 2002, 2387
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	518, 1523, 1925
FspBI	CTAG	5 cut(s)	744, 1397, 1476, 2135, 2636
GlaI	GCGC	2 cut(s)	82, 2488
GluI	GCNGC	3 cut(s)	518, 1523, 1925
GsuI	CTGGAG	4 cut(s)	925, 1115, 1373, 1563
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	5 cut(s)	323, 1185, 1204, 1406, 2242
HapII	CCGG	4 cut(s)	842, 1206, 2068, 2206
HhaI	GCGC	2 cut(s)	83, 2489
Hin1II	CATG	9 cut(s)	13, 606, 787, 856, 869, 1411, 1672, 2050, 2393
Hin6I	GCGC	2 cut(s)	81, 2487
HinP1I	GCGC	2 cut(s)	81, 2487
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	4 cut(s)	1832, 1844, 1976, 1995
HpaII	CCGG	4 cut(s)	842, 1206, 2068, 2206
HphI	GGTGA	5 cut(s)	658, 2101, 2213, 2513, 2528
Hpy188I	TCNGA	8 cut(s)	339, 697, 729, 811, 1277, 2359, 2433, 2455
HpyCH4III	ACNGT	3 cut(s)	443, 1021, 2038
HpyCH4IV	ACGT	3 cut(s)	423, 1456, 2017
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 1883, 2138
HpyF3I	CTNAG	6 cut(s)	696, 710, 1746, 1893, 2142, 2351
HpySE526I	ACGT	3 cut(s)	423, 1456, 2017
Hsp92II	CATG	9 cut(s)	13, 606, 787, 856, 869, 1411, 1672, 2050, 2393
HspAI	GCGC	2 cut(s)	81, 2487
KpnI	GGTACC	1 cut(s)	1710
KspI	CCGCGG	1 cut(s)	1713
Kzo9I	GATC	5 cut(s)	786, 1213, 1298, 2354, 2530
LguI	GCTCTTC	2 cut(s)	1006, 2313
LmnI	GCTCC	5 cut(s)	65, 113, 877, 1392, 1642
Lsp1109I	GCAGC	2 cut(s)	504, 1509
LweI	GCATC	6 cut(s)	1016, 1219, 1726, 1732, 1779, 2365
MaeI	CTAG	5 cut(s)	744, 1397, 1476, 2135, 2636
MaeII	ACGT	3 cut(s)	423, 1456, 2017
MaeIII	GTNAC	4 cut(s)	763, 1259, 1585, 1596
MalI	GATC	5 cut(s)	788, 1215, 1300, 2356, 2532
MbiI	CCGCTC	2 cut(s)	880, 2148
MboI	GATC	5 cut(s)	786, 1213, 1298, 2354, 2530
MfeI	CAATTG	1 cut(s)	1130
MflI	RGATCY	1 cut(s)	2354
MhlI	GDGCHC	2 cut(s)	62, 917
MlsI	TGGCCA	1 cut(s)	1406
MluNI	TGGCCA	1 cut(s)	1406
MlyI	GAGTC	2 cut(s)	41, 701
MmeI	TCCRAC	3 cut(s)	248, 309, 2456
Mox20I	TGGCCA	1 cut(s)	1406
Mph1103I	ATGCAT	2 cut(s)	867, 2052
MroXI	GAANNNNTTC	1 cut(s)	1997
MscI	TGGCCA	1 cut(s)	1406
MseI	TTAA	8 cut(s)	170, 243, 273, 849, 1655, 1808, 1868, 2559
MslI	CAYNNNNRTG	3 cut(s)	2198, 2394, 2613
Msp20I	TGGCCA	1 cut(s)	1406
MspA1I	CMGCKG	2 cut(s)	1468, 1712
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	4 cut(s)	842, 1206, 2068, 2206
MspR9I	CCNGG	7 cut(s)	1206, 1245, 1257, 1391, 2069, 2207, 2540
MunI	CAATTG	1 cut(s)	1130
Mva1269I	GAATGC	3 cut(s)	519, 867, 2098
MvaI	CCWGG	4 cut(s)	1245, 1257, 1391, 2540
MvnI	CGCG	1 cut(s)	1712
MwoI	GCNNNNNNNGC	3 cut(s)	159, 1883, 2138
NciI	CCSGG	3 cut(s)	1206, 2069, 2207
NcoI	CCATGG	3 cut(s)	602, 1407, 1668
NdeI	CATATG	1 cut(s)	1288
NdeII	GATC	5 cut(s)	786, 1213, 1298, 2354, 2530
NlaIII	CATG	9 cut(s)	13, 606, 787, 856, 869, 1411, 1672, 2050, 2393
NlaIV	GGNNCC	4 cut(s)	109, 954, 1186, 1708
NmeAIII	GCCGAG	1 cut(s)	521
NmuCI	GTSAC	1 cut(s)	1585
NsiI	ATGCAT	2 cut(s)	867, 2052
NspI	RCATGY	1 cut(s)	2050
PciSI	GCTCTTC	2 cut(s)	1006, 2313
PctI	GAATGC	3 cut(s)	519, 867, 2098
PdmI	GAANNNNTTC	1 cut(s)	1997
PfeI	GAWTC	9 cut(s)	287, 548, 1191, 2248, 2290, 2420, 2450, 2543, 2576
PkrI	GCNGC	3 cut(s)	519, 1524, 1926
PleI	GAGTC	2 cut(s)	41, 700
PpsI	GAGTC	2 cut(s)	41, 700
PshBI	ATTAAT	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	4 cut(s)	1243, 1255, 1389, 2538
PspGI	CCWGG	4 cut(s)	1243, 1255, 1389, 2538
PspN4I	GGNNCC	4 cut(s)	109, 954, 1186, 1708
PspPI	GGNCC	4 cut(s)	321, 836, 1184, 1203
PstI	CTGCAG	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	2354
PvuII	CAGCTG	1 cut(s)	1468
RsaI	GTAC	9 cut(s)	382, 422, 1102, 1281, 1708, 1717, 2035, 2204, 2408
RsaNI	GTAC	9 cut(s)	381, 421, 1101, 1280, 1707, 1716, 2034, 2203, 2407
RseI	CAYNNNNRTG	3 cut(s)	2198, 2394, 2613
SacI	GAGCTC	1 cut(s)	62
SacII	CCGCGG	1 cut(s)	1713
SapI	GCTCTTC	2 cut(s)	1006, 2313
SaqAI	TTAA	8 cut(s)	170, 243, 273, 849, 1655, 1808, 1868, 2559
SatI	GCNGC	3 cut(s)	518, 1523, 1925
Sau3AI	GATC	5 cut(s)	786, 1213, 1298, 2354, 2530
Sau96I	GGNCC	4 cut(s)	321, 836, 1184, 1203
ScaI	AGTACT	2 cut(s)	1102, 1281
SchI	GAGTC	2 cut(s)	41, 701
ScrFI	CCNGG	7 cut(s)	1206, 1245, 1257, 1391, 2069, 2207, 2540
SduI	GDGCHC	2 cut(s)	62, 917
SfaNI	GCATC	6 cut(s)	1016, 1219, 1726, 1732, 1779, 2365
SfcI	CTRYAG	3 cut(s)	615, 1224, 1555
Sfr303I	CCGCGG	1 cut(s)	1713
SgrBI	CCGCGG	1 cut(s)	1713
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	3 cut(s)	2198, 2394, 2613
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SsiI	CCGC	8 cut(s)	314, 674, 880, 976, 1710, 1712, 1924, 2148
SspMI	CTAG	5 cut(s)	744, 1397, 1476, 2135, 2636
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	7 cut(s)	1204, 1243, 1255, 1389, 2067, 2205, 2538
StyI	CCWWGG	5 cut(s)	602, 1306, 1407, 1668, 1731
TaaI	ACNGT	3 cut(s)	443, 1021, 2038
TaiI	ACGT	3 cut(s)	426, 1459, 2020
TaqI	TCGA	9 cut(s)	45, 68, 200, 220, 304, 527, 1375, 1531, 2602
TatI	WGTACW	3 cut(s)	380, 1100, 1279
TauI	GCSGC	1 cut(s)	1927
TfiI	GAWTC	9 cut(s)	287, 548, 1191, 2248, 2290, 2420, 2450, 2543, 2576
Tru1I	TTAA	8 cut(s)	170, 243, 273, 849, 1655, 1808, 1868, 2559
Tru9I	TTAA	8 cut(s)	170, 243, 273, 849, 1655, 1808, 1868, 2559
TseFI	GTSAC	1 cut(s)	1585
TseI	GCWGC	2 cut(s)	517, 1522
Tsp45I	GTSAC	1 cut(s)	1585
TspGWI	ACGGA	2 cut(s)	2002, 2600
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	836
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	6 cut(s)	71, 202, 250, 523, 715, 1567
XceI	RCATGY	1 cut(s)	2050
XmiI	GTMKAC	2 cut(s)	1161, 2014
XmnI	GAANNNNTTC	1 cut(s)	1997
XspI	CTAG	5 cut(s)	744, 1397, 1476, 2135, 2636
ZrmI	AGTACT	2 cut(s)	1102, 1281
Zsp2I	ATGCAT	2 cut(s)	867, 2052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.