Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Reverse (-)

38929281 .. 38930222

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGAGGATATATTTTATGTTGAGGAAGGAATGTTGTCGAATTCTAGAGGTGAGTTATCGGCAGAATCGCCACTAGGGGTGGAGAATGTGTTTGGAGATGATGGTGGTGGTGAGGTTTTGAATTTTGCTGTCTTCCCAGAACCAGAATTTGATCTGCCAATATTTTGTGCCAACTTCTTCACCAGTGCAAATGGGAACATAGTTGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

70

Amino Acids

7.57

Weight (kDa)

4.05

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	38 - 69	2.9e-08	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	40, 121, 146
AgsI	TTSAA	1 cut(s)	121
ApoI	RAATTY	3 cut(s)	40, 121, 146
AsuHPI	GGTGA	3 cut(s)	62, 122, 172
BbsI	GAAGAC	1 cut(s)	124
BccI	CCATC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	45, 74
BpiI	GAAGAC	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse1I	ACTGG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	190
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	40
FaiI	YATR	3 cut(s)	11, 18, 200
FspBI	CTAG	2 cut(s)	45, 74
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	3 cut(s)	62, 122, 172
Hpy188III	TCNNGA	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	150, 156, 196
MaeI	CTAG	2 cut(s)	45, 74
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	124, 169
MluCI	AATT	3 cut(s)	40, 121, 146
MnlI	CCTC	3 cut(s)	16, 41, 106
MslI	CAYNNNNRTG	1 cut(s)	203
NdeII	GATC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	151
SetI	ASST	2 cut(s)	52, 117
SgeI	CNNG	5 cut(s)	57, 86, 149, 155, 195
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	40, 121, 146
SspI	AATATT	1 cut(s)	162
SspMI	CTAG	2 cut(s)	45, 74
TaqI	TCGA	1 cut(s)	38
TasI	AATT	3 cut(s)	40, 121, 146
TfiI	GAWTC	1 cut(s)	65
TscAI	CASTG	1 cut(s)	190
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	3 cut(s)	40, 121, 146
XbaI	TCTAGA	1 cut(s)	44
XspI	CTAG	2 cut(s)	45, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.