Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Forward (+)

53207266 .. 53208319

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAACAAAATTGTGGAGAAATTAAAGAAATTTGGGTACATTACGGCGAATAAGAATGAGGATAAAGGTCAAGTGAGAGAGAGAGTGATCGAAAAAGGTTCTGTGGAGGATATATTTTATGTTGAGGAAGGAATGTTGCCGAATTCTAGAGGTGGGTTATCGGCAGAATCGCCATTAGGGGTGGAGAATGTGTTTGGAGATGATGGTGGTTGTGAGGTTTTGAATTTTGCTGTCTTCCCAGAACCAGAATTTGATATGCCAATATTTTGTGCCAACTTCTTCACCAGTGCGAATGGGAACATAATTGTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

105

Amino Acids

11.48

Weight (kDa)

4.51

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	71 - 103	5.4e-08	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	29, 142, 223, 248
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	223
ApoI	RAATTY	4 cut(s)	29, 142, 223, 248
AsuHPI	GGTGA	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	226
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse1I	ACTGG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	37
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	142
FaiI	YATR	4 cut(s)	113, 120, 257, 302
FspBI	CTAG	1 cut(s)	147
HinfI	GANTC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	252, 258, 298
MaeI	CTAG	1 cut(s)	147
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	2 cut(s)	226, 271
MluCI	AATT	7 cut(s)	9, 20, 29, 142, 223, 248, 303
MnlI	CCTC	5 cut(s)	52, 100, 118, 143, 208
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	305
NdeII	GATC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	87
SetI	ASST	4 cut(s)	70, 100, 154, 219
SgeI	CNNG	5 cut(s)	83, 159, 251, 257, 297
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	7 cut(s)	9, 20, 29, 142, 223, 248, 303
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	1 cut(s)	147
TaqI	TCGA	1 cut(s)	90
TasI	AATT	7 cut(s)	9, 20, 29, 142, 223, 248, 303
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	292
XapI	RAATTY	4 cut(s)	29, 142, 223, 248
XbaI	TCTAGA	1 cut(s)	146
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.