Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Reverse (-)

38876363 .. 38881716

Gene Structure 5354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2532 bp

ATGGCTCTTGTGCCCAGTCGCCAACTTTACCCAACGAGCTTATTGGAGAGCTCCTTGTCAAAGTTACATGGCACCCACATCCACTTGTTCAGGTATGGCTCCTCAATTCCTTACAAGAAGCAGAAATTCCATGCAACCCACTACTTTATCAGCTCTGGTGAGCAAAACCCACCCAGGAAATCAAGTTTGTTGATTTCTCAATACAAACCCACCAAGAATTTATCTAGTTGTAGTTGGATTGATAGATGGAATGAATCCCGGAAACAAAATGGGCCCAGGGCGCCTCGGGCCGTGTTGGACTATCAGAGCAATGAAAGTGGGAATTTGAGTAGTTCAGGCAATGATGGGGGTAGTACAATGGACAAAATTGTGGAGAAATTAAAGAAATTTGGGTACATTGCGGCGGATAAGAATGAGGGTAAAGGTCAAGGGAGGGAGAGAGTGATCGAAAAAGGTTCTGTGGAGGATATATTTTATGTTGAGGAAGGAATGTTGCCGAATTCTAGAGGTGGGTTCTCGGCAGAATCGCCATTAGGGGTGGAGAATGTGTTTGGAGATGATGGTGGTGAGGTGAGGTTTCCCTGGGAAAAGCCCAGGGAGAAAGAGCAGGAAGAAGACGGTTCGGTCAGGAGGAGGAGTAGGACTTCATTGGCAGAATTGACTCTTCCTGAGTCGGAGCTGAGGAGGCTAAGGAATATGACATTTCAGAAGAAGCACAAGACTAGGATTGGAGGTGCTGGTGTTACTCAAGCAGTAGTGGAGATGATTCATGAGAGATGGAAGACGTCCGAGATTGTGAGATTGAAAATCGAAGGTCCACCTGCACTCAACATGAAGAGAATGCATGAGATATTGGAGCGGAAAACTGGTGGTTTGGTGATCTGGAGGTCTGGCACGTCGCTTTCTTTGTATAGAGGTGTGAGCTATGAAGTTCCTTCCGTGCAACTAAGCAAGCGGATATTCAAGAGAAATGAAATTTCTTCTTCATCTTCACCAACTGTAGCTGATAAGTCAGTGGGGGAACCTTCTGTGCTTGCTTCTTATAGTATTGTAAAGACACCCTCAGAAGTGTCAGAGAATACATCCCAGGAGAAGGAAGACACAGAACAGTTGCCAGAAGTGAAGTATGAAGATGAAGTAGACCAACTTTTAGATAGCATAGGCCCTCGATTCAAGGATTGGCCAGGATGTGACCCATTACCTGTAGATGCAGACATGCTCCCAGGGATAGTTCCTGGTTTCCAACCGCCATTCAGAATACTTCCGTATGGAGTGCGATCAACTCTTGGTTTAAAGGAGGCAACATCTTTAAGAAGGCTTGCTAGGGTTCTTCCACCACATTTTGCTTTAGGTCGAAATAGGCAGCTGCAGGGCTTAGCAGTGGCTATGAGTAAACTATGGGAAAGAAGTTTGATTGCAAAGATTGCACTGAAACGTGGTGTTCAGTTGACTACTAGTGAGAGAATGGCTGAAGACATCAAGAAATTGACAGGGGGTGTGCTGCTATCTCGAAACAAGGACTTCTTGGTCTTCTATAGGGGAAAGAATTTTTTGTCTGCAGAAGTCACTGAAGCATTAGTGGAAAGGGAGAGATTGGCAAAATCCCTTCAAGATGAAGAGGAACAGGCCAGGTTGAGAGCATCAGCGATGGTTATGCCAAGTGTTGAACCAGCTCAACATTTTGGTACAGCTGGTACACTTGGGGAGACTCTGGATGCAGATGCTAAGTGGGGAAAGAGGTTGGATGTTCATCATAAGGAGAAGGTGACGCAAGAAGCAGGAATATTAAGGCATGCCAATCTGGTTAGAAAGCTTGAACAGAAGCTTGCCTTTGCTGAACGAAAGCTCATGAGAGCTGAACAAGCCTTATCTAAGGTAGAGGAGTCATTGAAACCATCAAAGCAGCAAGCAGACCCAGAAAGCATTACTGATGAGGAGAGGTTTATGTTTCGTAAGCTTGGTTTGAAGATGAAAGCTTTCCTACTACTTGGTAGACGTGGAGTTTTTGATGGTACAGTGGAGAACATGCATTTGCACTGGAAGTACCGTGAATTGGTCAAGATAATGGTGAATGCTAAAACTTTTGATCAAGTAAAAAAAATTGCATTAGCACTTGAAGCTGAAAGTGGAGGTGTCTTGGTTTCAGTAGACAAGGCTCTTCTGAAACATATTGCAGCTGTGCAGAGTAGGGTGGATAGACTGAGATCTGAAATTGAACAAATGGATACTGTGAAACATCATGGAGATGAAGCATTGTACAACAAATTAGATTCTTCTTATCCTACTGATGATGAGGATACAGAGGAAGAAGGGGACGATGCTTATCTTGAAACATATAACAGCGAGAATGATGGTGAAGAAGAAAGCAGTTTCTCAGTTCACAATACTTCCACGGAAACCAATTTTCCTTATCATCTCCAGAATGACGACTCTCTAGCAGAATTGGAATTTCCGCAGCAACATATACACACAGCGCGCAAGGGTATGAGTGTTGGAGCAGACCCAGATGAGCAAGATAACTGCTTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

843

Amino Acids

94.95

Weight (kDa)

6.67

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	222 - 305	1.1e-19	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	432 - 513	8.1e-14	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	642 - 718	1.4e-17	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	829
AasI	GACNNNNNNGTC	2 cut(s)	623, 1526
AatII	GACGTC	1 cut(s)	788
Acc36I	ACCTGC	1 cut(s)	829
AccB1I	GGYRCC	2 cut(s)	71, 280
AccBSI	CCGCTC	1 cut(s)	859
AccI	GTMKAC	3 cut(s)	1140, 1993, 2148
AccII	CGCG	1 cut(s)	2476
AciI	CCGC	6 cut(s)	401, 404, 859, 955, 1247, 2453
AcoI	YGGCCR	1 cut(s)	1181
AcsI	RAATTY	8 cut(s)	125, 217, 322, 386, 499, 975, 1546, 2447
AcuI	CTGAAG	2 cut(s)	1491, 1590
AcyI	GRCGYC	2 cut(s)	281, 785
AfaI	GTAC	7 cut(s)	355, 395, 1687, 1696, 2014, 2045, 2258
AfiI	CCNNNNNNNGG	2 cut(s)	1093, 2053
AhlI	ACTAGT	1 cut(s)	1454
AjiI	CACGTC	2 cut(s)	897, 1997
AjnI	CCWGG	9 cut(s)	173, 275, 581, 593, 1086, 1183, 1222, 1234, 1628
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	1700
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	5 cut(s)	272, 288, 1162, 1181, 1626
ApaI	GGGCCC	1 cut(s)	276
ApeKI	GCWGC	6 cut(s)	1363, 1366, 1501, 1903, 2174, 2455
ApoI	RAATTY	8 cut(s)	125, 217, 322, 386, 499, 975, 1546, 2447
Asp700I	GAANNNNTTC	1 cut(s)	1976
AspLEI	GCGC	3 cut(s)	283, 2476, 2478
AspS9I	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	8 cut(s)	170, 578, 583, 889, 984, 1777, 2080, 2366
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	2 cut(s)	15, 276
BalI	TGGCCA	1 cut(s)	1183
BanI	GGYRCC	2 cut(s)	71, 280
BanII	GRGCYC	2 cut(s)	53, 276
BbsI	GAAGAC	5 cut(s)	621, 788, 1104, 1479, 1522
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	680
BbvI	GCAGC	6 cut(s)	1353, 1375, 1488, 1915, 2186, 2467
BccI	CCATC	8 cut(s)	240, 338, 554, 771, 1642, 1903, 2003, 2345
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	1636, 1670
BciT130I	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
BciVI	GTATCC	2 cut(s)	2218, 2290
BclI	TGATCA	1 cut(s)	2086
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	1700
BcuI	ACTAGT	1 cut(s)	1454
BfaI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2435
BfmI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
BfoI	RGCGCY	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	829
BfuI	GTATCC	2 cut(s)	2218, 2290
BglII	AGATCT	1 cut(s)	2204
BisI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2175, 2456
BlpI	GCTNAGC	1 cut(s)	1375
BlsI	GCNGC	7 cut(s)	403, 1365, 1368, 1503, 1905, 2176, 2457
Bme18I	GGWCC	1 cut(s)	815
BmeT110I	CYCGRG	1 cut(s)	285
BmgBI	CACGTC	2 cut(s)	897, 1997
BmgT120I	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
BmiI	GGNNCC	5 cut(s)	73, 100, 274, 282, 1023
BmrI	ACTGGG	1 cut(s)	9
BmsI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2308
BmuI	ACTGGG	1 cut(s)	9
BpiI	GAAGAC	5 cut(s)	621, 788, 1104, 1479, 1522
BpmI	CTGGAG	2 cut(s)	904, 2402
Bpu10I	CCTNAGC	2 cut(s)	680, 689
Bpu1102I	GCTNAGC	1 cut(s)	1375
BpuEI	CTTGAG	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	259
BsaBI	GATNNNNATC	2 cut(s)	1749, 2322
BsaHI	GRCGYC	2 cut(s)	281, 785
BsaXI	ACNNNNNCTCC	4 cut(s)	533, 563, 622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	1093, 2053
Bse1I	ACTGG	3 cut(s)	15, 871, 2042
Bse3DI	GCAATG	3 cut(s)	316, 346, 396
Bse8I	GATNNNNATC	2 cut(s)	1749, 2322
BseBI	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
BseGI	GGATG	5 cut(s)	78, 1082, 1193, 1720, 1750
BseJI	GATNNNNATC	2 cut(s)	1749, 2322
BseLI	CCNNNNNNNGG	2 cut(s)	1093, 2053
BseMI	GCAATG	3 cut(s)	316, 346, 396
BseMII	CTCAG	5 cut(s)	660, 671, 1077, 2192, 2388
BseNI	ACTGG	3 cut(s)	15, 871, 2042
BsePI	GCGCGC	1 cut(s)	2474
BseRI	GAGGAG	6 cut(s)	91, 646, 649, 697, 1895, 1949
BseSI	GKGCMC	2 cut(s)	15, 276
BseXI	GCAGC	6 cut(s)	1353, 1375, 1488, 1915, 2186, 2467
BsgI	GTGCAG	2 cut(s)	807, 2201
Bsh1236I	CGCG	1 cut(s)	2476
BshFI	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
BshNI	GGYRCC	2 cut(s)	71, 280
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	2327
BslI	CCNNNNNNNGG	2 cut(s)	1093, 2053
BsmAI	GTCTC	1 cut(s)	1700
BsmFI	GGGAC	1 cut(s)	2327
BsmI	GAATGC	2 cut(s)	846, 2077
BsnI	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
BsoBI	CYCGRG	1 cut(s)	285
Bsp120I	GGGCCC	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	15, 53, 276
Bsp1407I	TGTACA	1 cut(s)	2256
Bsp143I	GATC	5 cut(s)	444, 879, 1277, 2086, 2204
Bsp1720I	GCTNAGC	1 cut(s)	1375
BspACI	CCGC	6 cut(s)	401, 404, 859, 955, 1247, 2453
BspANI	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
BspCNI	CTCAG	5 cut(s)	661, 672, 1076, 2193, 2387
BspFNI	CGCG	1 cut(s)	2476
BspHI	TCATGA	2 cut(s)	769, 1848
BspLI	GGNNCC	5 cut(s)	73, 100, 274, 282, 1023
BspMAI	CTGCAG	2 cut(s)	1371, 1561
BspMI	ACCTGC	1 cut(s)	829
BspQI	GCTCTTC	1 cut(s)	2163
BspT107I	GGYRCC	2 cut(s)	71, 280
BsrBI	CCGCTC	1 cut(s)	859
BsrDI	GCAATG	3 cut(s)	316, 346, 396
BsrGI	TGTACA	1 cut(s)	2256
BsrI	ACTGG	3 cut(s)	15, 871, 2042
BssHII	GCGCGC	1 cut(s)	2474
BssMI	GATC	5 cut(s)	444, 879, 1277, 2086, 2204
BssNI	GRCGYC	2 cut(s)	281, 785
Bst2UI	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
Bst4CI	ACNGT	6 cut(s)	620, 1000, 1110, 2017, 2048, 2230
Bst6I	CTCTTC	4 cut(s)	669, 830, 1611, 2163
BstACI	GRCGYC	2 cut(s)	281, 785
BstAPI	GCANNNNNTGC	1 cut(s)	1424
BstAUI	TGTACA	1 cut(s)	2256
BstC8I	GCNNGC	7 cut(s)	953, 1035, 1320, 1794, 1827, 1908, 2476
BstDSI	CCRYGG	1 cut(s)	2391
BstF5I	GGATG	5 cut(s)	78, 1082, 1193, 1720, 1750
BstFNI	CGCG	1 cut(s)	2476
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	3 cut(s)	283, 2476, 2478
BstKTI	GATC	5 cut(s)	447, 882, 1280, 2089, 2207
BstMAI	GTCTC	1 cut(s)	1700
BstMBI	GATC	5 cut(s)	444, 879, 1277, 2086, 2204
BstMWI	GCNNNNNNNGC	6 cut(s)	280, 287, 685, 1424, 1862, 2117
BstNI	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
BstNSI	RCATGY	3 cut(s)	1219, 1796, 2029
BstSFI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
BstSLI	GKGCMC	2 cut(s)	15, 276
BstUI	CGCG	1 cut(s)	2476
BstV1I	GCAGC	6 cut(s)	1353, 1375, 1488, 1915, 2186, 2467
BstV2I	GAAGAC	5 cut(s)	621, 788, 1104, 1479, 1522
BstX2I	RGATCY	1 cut(s)	2204
BstYI	RGATCY	1 cut(s)	2204
BsuI	GTATCC	2 cut(s)	2218, 2290
BsuRI	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
BtgI	CCRYGG	1 cut(s)	2391
BtgZI	GCGATG	1 cut(s)	1661
BtrI	CACGTC	2 cut(s)	897, 1997
BtsCI	GGATG	5 cut(s)	78, 1082, 1193, 1720, 1750
BtsI	GCAGTG	1 cut(s)	1386
BtsIMutI	CAGTG	6 cut(s)	1020, 1386, 1427, 1566, 2022, 2035
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	7 cut(s)	953, 1035, 1320, 1794, 1827, 1908, 2476
CciI	TCATGA	2 cut(s)	769, 1848
CfoI	GCGC	3 cut(s)	283, 2476, 2478
Cfr13I	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
CseI	GACGC	1 cut(s)	1777
Csp6I	GTAC	7 cut(s)	354, 394, 1686, 1695, 2013, 2044, 2257
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviQI	GTAC	7 cut(s)	354, 394, 1686, 1695, 2013, 2044, 2257
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	5 cut(s)	446, 881, 1279, 2088, 2206
DpnII	GATC	5 cut(s)	444, 879, 1277, 2086, 2204
DraI	TTTAAA	1 cut(s)	1293
DrdI	GACNNNNNNGTC	2 cut(s)	623, 1526
DseDI	GACNNNNNNGTC	2 cut(s)	623, 1526
EaeI	YGGCCR	1 cut(s)	1181
Eam1104I	CTCTTC	4 cut(s)	669, 830, 1611, 2163
EarI	CTCTTC	4 cut(s)	669, 830, 1611, 2163
EciI	GGCGGA	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	53, 276
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	1491, 1590
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	1163
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	9 cut(s)	173, 275, 581, 593, 1086, 1183, 1222, 1234, 1628
EcoT22I	ATGCAT	2 cut(s)	846, 2031
EcoT38I	GRGCYC	2 cut(s)	53, 276
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
FalI	AAGNNNNNCTT	4 cut(s)	1508, 1540, 1814, 1846
FaqI	GGGAC	1 cut(s)	2327
FbaI	TGATCA	1 cut(s)	2086
FblI	GTMKAC	3 cut(s)	1140, 1993, 2148
Fnu4HI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2175, 2456
FokI	GGATG	5 cut(s)	65, 1069, 1200, 1727, 1757
FriOI	GRGCYC	2 cut(s)	53, 276
Fsp4HI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2175, 2456
FspBI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2435
GlaI	GCGC	3 cut(s)	282, 2475, 2477
GluI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2175, 2456
GsuI	CTGGAG	2 cut(s)	904, 2402
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
HapII	CCGG	1 cut(s)	259
HgaI	GACGC	1 cut(s)	1777
HhaI	GCGC	3 cut(s)	283, 2476, 2478
Hin1I	GRCGYC	2 cut(s)	281, 785
Hin6I	GCGC	3 cut(s)	281, 2474, 2476
HinP1I	GCGC	3 cut(s)	281, 2474, 2476
HincII	GTYRAC	1 cut(s)	1449
HindII	GTYRAC	1 cut(s)	1449
HindIII	AAGCTT	4 cut(s)	1811, 1823, 1955, 1974
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	8 cut(s)	170, 578, 583, 889, 984, 1777, 2080, 2366
Hpy166II	GTNNAC	8 cut(s)	818, 1141, 1394, 1449, 1697, 1994, 2149, 2380
Hpy188I	TCNGA	9 cut(s)	306, 676, 708, 790, 1066, 1075, 1256, 2163, 2209
Hpy8I	GTNNAC	8 cut(s)	818, 1141, 1394, 1449, 1697, 1994, 2149, 2380
Hpy99I	CGWCG	1 cut(s)	901
HpyAV	CCTTC	9 cut(s)	479, 806, 945, 1035, 1087, 1308, 1616, 1756, 2303
HpyCH4III	ACNGT	6 cut(s)	620, 1000, 1110, 2017, 2048, 2230
HpyCH4IV	ACGT	4 cut(s)	785, 896, 1435, 1996
HpyF10VI	GCNNNNNNNGC	6 cut(s)	280, 287, 685, 1424, 1862, 2117
HpySE526I	ACGT	4 cut(s)	785, 896, 1435, 1996
Hsp92I	GRCGYC	2 cut(s)	281, 785
HspAI	GCGC	3 cut(s)	281, 2474, 2476
KasI	GGCGCC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	2086
Kzo9I	GATC	5 cut(s)	444, 879, 1277, 2086, 2204
LguI	GCTCTTC	1 cut(s)	2163
LmnI	GCTCC	6 cut(s)	56, 104, 676, 856, 1224, 2495
Lsp1109I	GCAGC	6 cut(s)	1353, 1375, 1488, 1915, 2186, 2467
LweI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2308
MaeI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2435
MaeII	ACGT	4 cut(s)	785, 896, 1435, 1996
MaeIII	GTNAC	5 cut(s)	63, 742, 1190, 1564, 1765
MalI	GATC	5 cut(s)	446, 881, 1279, 2088, 2206
MbiI	CCGCTC	1 cut(s)	859
MboI	GATC	5 cut(s)	444, 879, 1277, 2086, 2204
MflI	RGATCY	1 cut(s)	2204
MhlI	GDGCHC	3 cut(s)	15, 53, 276
MlsI	TGGCCA	1 cut(s)	1183
MluNI	TGGCCA	1 cut(s)	1183
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	5 cut(s)	655, 680, 1702, 1892, 2423
MmeI	TCCRAC	6 cut(s)	215, 276, 654, 1267, 1722, 2473
Mox20I	TGGCCA	1 cut(s)	1183
Mph1103I	ATGCAT	2 cut(s)	846, 2031
MroXI	GAANNNNTTC	1 cut(s)	1976
MscI	TGGCCA	1 cut(s)	1183
MseI	TTAA	4 cut(s)	380, 1292, 1310, 1787
MslI	CAYNNNNRTG	1 cut(s)	2244
Msp20I	TGGCCA	1 cut(s)	1183
MspA1I	CMGCKG	3 cut(s)	1366, 1691, 2177
MspI	CCGG	1 cut(s)	259
Mva1269I	GAATGC	2 cut(s)	846, 2077
MvaI	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
MvnI	CGCG	1 cut(s)	2476
MwoI	GCNNNNNNNGC	6 cut(s)	280, 287, 685, 1424, 1862, 2117
NarI	GGCGCC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	5 cut(s)	444, 879, 1277, 2086, 2204
NlaIV	GGNNCC	5 cut(s)	73, 100, 274, 282, 1023
NmeAIII	GCCGAG	1 cut(s)	497
NmuCI	GTSAC	3 cut(s)	1190, 1564, 1765
NsiI	ATGCAT	2 cut(s)	846, 2031
NspI	RCATGY	3 cut(s)	1219, 1796, 2029
PaeI	GCATGC	1 cut(s)	1796
PagI	TCATGA	2 cut(s)	769, 1848
PaqCI	CACCTGC	1 cut(s)	829
PasI	CCCWGGG	4 cut(s)	276, 582, 594, 1223
PauI	GCGCGC	1 cut(s)	2474
PciSI	GCTCTTC	1 cut(s)	2163
PctI	GAATGC	2 cut(s)	846, 2077
PdmI	GAANNNNTTC	1 cut(s)	1976
PfeI	GAWTC	5 cut(s)	254, 524, 766, 1170, 2270
PfoI	TCCNGGA	1 cut(s)	257
PkrI	GCNGC	7 cut(s)	403, 1365, 1368, 1503, 1905, 2176, 2457
PleI	GAGTC	5 cut(s)	655, 679, 1702, 1891, 2423
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	5 cut(s)	655, 679, 1702, 1891, 2423
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	9 cut(s)	173, 275, 581, 593, 1086, 1183, 1222, 1234, 1628
PspGI	CCWGG	9 cut(s)	173, 275, 581, 593, 1086, 1183, 1222, 1234, 1628
PspN4I	GGNNCC	5 cut(s)	73, 100, 274, 282, 1023
PspOMI	GGGCCC	1 cut(s)	272
PspPI	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
PstI	CTGCAG	2 cut(s)	1371, 1561
PsuI	RGATCY	1 cut(s)	2204
PteI	GCGCGC	1 cut(s)	2474
PvuII	CAGCTG	3 cut(s)	1366, 1691, 2177
RsaI	GTAC	7 cut(s)	355, 395, 1687, 1696, 2014, 2045, 2258
RsaNI	GTAC	7 cut(s)	354, 394, 1686, 1695, 2013, 2044, 2257
RseI	CAYNNNNRTG	1 cut(s)	2244
SacI	GAGCTC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	2163
SaqAI	TTAA	4 cut(s)	380, 1292, 1310, 1787
SatI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2175, 2456
Sau3AI	GATC	5 cut(s)	444, 879, 1277, 2086, 2204
Sau96I	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
SchI	GAGTC	5 cut(s)	655, 680, 1702, 1892, 2423
SduI	GDGCHC	3 cut(s)	15, 53, 276
SfaNI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2308
SfcI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
SfoI	GGCGCC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	2244
SmlI	CTYRAG	1 cut(s)	747
SmoI	CTYRAG	1 cut(s)	747
SpeI	ACTAGT	1 cut(s)	1454
SphI	GCATGC	1 cut(s)	1796
SsiI	CCGC	6 cut(s)	401, 404, 859, 955, 1247, 2453
SspDI	GGCGCC	1 cut(s)	280
SspI	AATATT	1 cut(s)	1785
SspMI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2435
SstI	GAGCTC	1 cut(s)	53
TaaI	ACNGT	6 cut(s)	620, 1000, 1110, 2017, 2048, 2230
TaiI	ACGT	4 cut(s)	788, 899, 1438, 1999
TaqI	TCGA	5 cut(s)	447, 810, 1168, 1354, 1510
TaqII	GACCGA	1 cut(s)	613
TatI	WGTACW	2 cut(s)	353, 2256
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	5 cut(s)	254, 524, 766, 1170, 2270
Tru1I	TTAA	4 cut(s)	380, 1292, 1310, 1787
Tru9I	TTAA	4 cut(s)	380, 1292, 1310, 1787
TscAI	CASTG	6 cut(s)	1020, 1386, 1434, 1573, 2022, 2042
TseFI	GTSAC	3 cut(s)	1190, 1564, 1765
TseI	GCWGC	6 cut(s)	1363, 1366, 1501, 1903, 2174, 2455
Tsp45I	GTSAC	3 cut(s)	1190, 1564, 1765
TspGWI	ACGGA	3 cut(s)	928, 1254, 2408
TspRI	CASTG	6 cut(s)	1020, 1386, 1434, 1573, 2022, 2042
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	8 cut(s)	125, 217, 322, 386, 499, 975, 1546, 2447
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	3 cut(s)	1219, 1796, 2029
XmiI	GTMKAC	3 cut(s)	1140, 1993, 2148
XmnI	GAANNNNTTC	1 cut(s)	1976
XspI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2435
ZraI	GACGTC	1 cut(s)	786
Zsp2I	ATGCAT	2 cut(s)	846, 2031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.