Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8235889.1

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 550

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8235889.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgactcttgcgcccagtcgccaactttacccaacgagcttattggagagctccttccatggcacccacatccacttgttcaggtatggctcctcaattccttacaagaagcagagattccatgcaacccactactttatcagctctggtgagcaaaacccacccaggaaattgagtttgttgacttctcaatacaaacccaccaggaatttatctagttgtagttggattgatagatggaatgaatcccggaaacaaaatgggcccagggcgccgcgggccgtgttggactatcagagcaatgaaagtgggaatttgagtggttcaggcaatgatgggggtagtacaatggacaaaattgtggagaaattaaagaaatttgggtacattgcggcggataagaatgagggtaaaggtcaagggagggagagagtgatcgaaaaaggttctgtggaggatatattttatgttgaggaaggaatgttgccgaattctagaggtgggttctcggcagagtcgccattaggggtggagaatgtgtttggagat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

183

Amino Acids

20.44

Weight (kDa)

9.14

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	62, 271
AccII	CGCG	1 cut(s)	277
AciI	CCGC	4 cut(s)	275, 277, 392, 395
AcsI	RAATTY	4 cut(s)	208, 313, 377, 490
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	2 cut(s)	346, 386
AjnI	CCWGG	3 cut(s)	164, 203, 266
AluBI	AGCT	3 cut(s)	39, 51, 144
AluI	AGCT	3 cut(s)	39, 51, 144
Alw21I	GWGCWC	1 cut(s)	53
AoxI	GGCC	2 cut(s)	263, 279
ApaI	GGGCCC	1 cut(s)	267
ApoI	RAATTY	4 cut(s)	208, 313, 377, 490
AspLEI	GCGC	2 cut(s)	13, 274
AspS9I	GGNCC	3 cut(s)	263, 264, 279
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	267
BanI	GGYRCC	2 cut(s)	62, 271
BanII	GRGCYC	2 cut(s)	53, 267
Bbv12I	GWGCWC	1 cut(s)	53
BccI	CCATC	2 cut(s)	231, 329
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	3 cut(s)	166, 205, 268
BcnI	CCSGG	1 cut(s)	250
BfaI	CTAG	2 cut(s)	216, 495
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	2 cut(s)	275, 393
BlsI	GCNGC	2 cut(s)	276, 394
Bme1390I	CCNGG	4 cut(s)	166, 205, 250, 268
BmgT120I	GGNCC	3 cut(s)	263, 264, 279
BmiI	GGNNCC	4 cut(s)	64, 91, 265, 273
BmrFI	CCNGG	4 cut(s)	166, 205, 250, 268
BmrI	ACTGGG	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	272
BsaJI	CCNNGG	5 cut(s)	58, 164, 266, 267, 275
BsaXI	ACNNNNNCTCC	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	3 cut(s)	307, 337, 387
BseBI	CCWGG	3 cut(s)	166, 205, 268
BseDI	CCNNGG	5 cut(s)	58, 164, 266, 267, 275
BseGI	GGATG	1 cut(s)	69
BseMI	GCAATG	3 cut(s)	307, 337, 387
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	265, 281
BshNI	GGYRCC	2 cut(s)	62, 271
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	250
BsnI	GGCC	2 cut(s)	265, 281
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	53, 267
Bsp143I	GATC	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	4 cut(s)	275, 277, 392, 395
BspANI	GGCC	2 cut(s)	265, 281
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	4 cut(s)	64, 91, 265, 273
BspT107I	GGYRCC	2 cut(s)	62, 271
BsrDI	GCAATG	3 cut(s)	307, 337, 387
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	5 cut(s)	58, 164, 266, 267, 275
BssMI	GATC	1 cut(s)	435
BssNI	GRCGYC	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	3 cut(s)	166, 205, 268
BstACI	GRCGYC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	279
BstDSI	CCRYGG	2 cut(s)	58, 275
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	13, 274
BstKTI	GATC	1 cut(s)	438
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 278
BstNI	CCWGG	3 cut(s)	166, 205, 268
BstSCI	CCNGG	4 cut(s)	164, 203, 248, 266
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	265, 281
BtgI	CCRYGG	2 cut(s)	58, 275
BtsCI	GGATG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	2 cut(s)	13, 274
Cfr13I	GGNCC	3 cut(s)	263, 264, 279
Cfr42I	CCGCGG	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	345, 385
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	2 cut(s)	59, 122
CviJI	RGCY	6 cut(s)	39, 51, 90, 144, 265, 281
CviKI_1	RGCY	6 cut(s)	39, 51, 90, 144, 265, 281
CviQI	GTAC	2 cut(s)	345, 385
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	53, 267
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	3 cut(s)	164, 203, 266
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	53, 267
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	62, 125
FaiI	YATR	5 cut(s)	60, 87, 123, 461, 468
FatI	CATG	2 cut(s)	58, 121
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	275, 393
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	2 cut(s)	53, 267
Fsp4HI	GCNGC	2 cut(s)	275, 393
FspBI	CTAG	2 cut(s)	216, 495
GlaI	GCGC	2 cut(s)	12, 273
GluI	GCNGC	2 cut(s)	275, 393
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	265, 281
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	2 cut(s)	13, 274
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	62, 125
Hin6I	GCGC	2 cut(s)	11, 272
HinP1I	GCGC	2 cut(s)	11, 272
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	4 cut(s)	4, 117, 245, 515
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	495
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	2 cut(s)	64, 470
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 278
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	62, 125
HspAI	GCGC	2 cut(s)	11, 272
KasI	GGCGCC	1 cut(s)	271
KspI	CCGCGG	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	56, 95
MaeI	CTAG	2 cut(s)	216, 495
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	53, 267
MluCI	AATT	8 cut(s)	96, 170, 208, 313, 357, 368, 377, 490
Mly113I	GGCGCC	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	206, 267
MnlI	CCTC	6 cut(s)	103, 400, 417, 448, 466, 491
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	4 cut(s)	166, 205, 250, 268
MvaI	CCWGG	3 cut(s)	166, 205, 268
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	271, 278
NarI	GGCGCC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	2 cut(s)	62, 125
NlaIV	GGNNCC	4 cut(s)	64, 91, 265, 273
NmeAIII	GCCGAG	1 cut(s)	488
PasI	CCCWGGG	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	117, 245
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	276, 394
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	3 cut(s)	164, 203, 266
PspGI	CCWGG	3 cut(s)	164, 203, 266
PspN4I	GGNNCC	4 cut(s)	64, 91, 265, 273
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	3 cut(s)	263, 264, 279
RsaI	GTAC	2 cut(s)	346, 386
RsaNI	GTAC	2 cut(s)	345, 385
SacI	GAGCTC	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	2 cut(s)	275, 393
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	3 cut(s)	263, 264, 279
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	4 cut(s)	166, 205, 250, 268
SduI	GDGCHC	2 cut(s)	53, 267
SetI	ASST	7 cut(s)	41, 53, 86, 146, 418, 448, 502
SfoI	GGCGCC	1 cut(s)	273
Sfr303I	CCGCGG	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	278
Sse9I	AATT	8 cut(s)	96, 170, 208, 313, 357, 368, 377, 490
SsiI	CCGC	4 cut(s)	275, 277, 392, 395
SspDI	GGCGCC	1 cut(s)	271
SspMI	CTAG	2 cut(s)	216, 495
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	4 cut(s)	164, 203, 248, 266
StyI	CCWWGG	1 cut(s)	58
TaqI	TCGA	1 cut(s)	438
TasI	AATT	8 cut(s)	96, 170, 208, 313, 357, 368, 377, 490
TatI	WGTACW	1 cut(s)	344
TauI	GCSGC	2 cut(s)	277, 395
TfiI	GAWTC	2 cut(s)	117, 245
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	258, 318
XapI	RAATTY	4 cut(s)	208, 313, 377, 490
XbaI	TCTAGA	1 cut(s)	494
XspI	CTAG	2 cut(s)	216, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.