Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Forward (+)

51532457 .. 51537638

Gene Structure 5182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGACTCTTGTGCCCAGTCGCCAACTTTACCCAACGAGCTTATTGGAGAGCTCCTTCCGTGGCACCCACATCCACTTGTTCAGGTATGGCTCCTCGATTCCTTACAAGAAGCAGAAATTCCATGCAACCCACTACTTTAGCAGCTCTGGTGAGCAAAACCCACCCAGGAAATCAAGTTTGTTGACTTCTCAATACAAACCCACCAAGACTTTATCTAGTTGTAGTTGGATTGATAGATGGAATGAATCCCGGAAACAAAATGGGCCCAGGGCGCCGCGGGCCGTGTTGGACTATCAGAGCAATGAAAGTGGGAATTTGAGTAGTTCAGGCAATGATGGGGGTAGTACAATGGACAAAATTGTGGAGAAATTAAAGAAATTTGGGTACATTGCGGCGGATAAGAATGAGGGTAAAGGTCAAGGGAGGGAGAGAGTGATCGAAAAAGGTTCTGTGGAGGATATATTTTATGTTGAGGAAGGAATGTTGCCGAATTCTAGAGGTGGGTTCTCCGCAGAGTCGCCATTAGGGGTGGAGAATGTGTTTGGAGATGATGGTGGTGGTGGTGGTGAGGTGAGGTTTCCATGGGAAAAGCCCAGGGAGAAAGAGAAGCAAGAAGACGGTTCGGTCAGGAGGAGGAGTAGGACTTCATTGGCAGAATTGACTCTTCCTGAGTCAGAGCTGAGGAGGCTAAGGAATATGACATTTCAGAAGAAGCACAAGACTAGGATTGGAGGTGCTGGTGTTACTCAAGCAGTAGTGGAGATGATTCATGAGAGATGGAAGACGTCCGAGATTGTGAGATTGAAAATCGAAGGTCCACCTGCACTCAACATGAAGAGAATGCATGAGATATTGGAGCGGAAAACTGGTGGTTTGGTTATCTGGAGGTCTGGCACATCGCTTTCTTTGTACAGAGGTGTGAGCTATGAAGTTCCTTCCGTGCAACTAAGCAAGCGGATATTCAAGAGAAATGAAATTTCTTCTTCATCTTCACCAACTGTAGCTGATAAGTCAGTGGGGGAACCTTCTGTGCTTGCTTCTTATAGTATTGTAAAGACACCCTCAGAAGTGTCAGAGAATACATCCCAGGAGAAGGAAGAGACAGAACAGTTGCCAGAAGTGAAGTATGAAGATGAAGTAGACCAACTTTTAGATAGCATAGGCCCTCGATTCAAGGATTGGCCAGGATGTGACCCATTACCTGTAGATGCAGACATGCTCCCAGGGATAGTTCCTGGTTTCCAACCGCCATTCAGAATACTTCCTTATGGAGTGCGATCATCTCTTGGTTTAAAGGAGGCAACATCTTTAAGAAGGCTTGCTAGGGTTCTTCCACCACATTTTGCTTTAGGTCGAAATAGGCAGCTGCAGGGCTTAGCAGTGGCTATGAGTAAACTATGGGAAAGAAGTTTGATTGCAAAGATTGCACTGAAACGTGGTGTTCAGTTGACTACTAGTGAGAGAATGGCTGAAGACATCAAGAAATTGACAGGGGGTGTGCTGCTATCTCGAAACAAGGACTTCTTGGTCTTCTACAGGGGAAAGAATTTTTTGTCTGCAGAAGTCACTGAAGCATTAGTGGAAAGGGAGAGATTGGCAAAATCCCTTCAAGATGAAGAGGAACAGGCCAGGTTGAGAGCATCAGCGATGGTTATGCCAAGTGTTGAACCAGCTCAACATTTTGGTACAGCTGGTACACTTGGGGAGACTCTGGATGCAGATGCTAAGTGGGGAAAGAGGTTGGATGTTCATCATAAGGAGAAGGTGACGCAAGAAGCAGGAATATTAAGGCATGCCAATCTGGTTAGAAAGCTTGAACAGAAGCTTGCCTTTGCTGAACGAAAGCTCATGAGAGCTGAACAAGCCTTATCTAAGGTAGAGGAGTCATTGAAACCATCGAAGCAGCAAGCAGACCCAGAAAGCATTACTGATGAGGAGAGGTTTATGTTTCGTAAGCTTGGTTTGAAGATGAAAGCTTTCCTACTACTTGGTAGACGTGGAGTTTTTGATGGTACAGTGGAGAACATGCATTTGCACTGGAAGTACCGTGAATTGGTCAAGATAATGGTGAATGCTAAAACTTTTGATCAAGTAAAAAAAATTGCACTAGCACTTGAAGCTGAAAGTGGAGGTGTCTTGGTTTCAGTAGACAAAGTCTCCAAAAAATATGCTGTAATTGTGTACCGGGGAAATGACTATCAGCGACCTTCTACGTTGAGACCAAAGAATCTTTTGACCAAAAGGAAAGCTTTGGCACGTTCTATTGAGCTTCAAAGGCAGGAGGCTCTTCTGAAACATATTGCAGCTGTGCAGAGCAGGGTGGATAGACTGAGATCTGAAATTGAACAAATGGATACTGTGAAACATCATGGAGATGAAGCATTGTACAACAAATTAGATTCTTCTTATCCTACTGATGATGAGGATACAGAGGAAGAAGGCGACGATGCTTATCTTGAAACATATAACAGCGAAAATGATGATGAAGAAGAAAGCAGTTGCTCAGTTCACAATACTTCCACGCAAACCAATTTTCCTTATCATCTCCAGAATGAGGACTCTCTAGCAGAATTGGAATTTCCGCAGCAACATATACACGCAGCGCGCAAGGGTATGAGTGTTGGAGCAGACCCAGATGAGCAAGCTAACTGCTTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

886

Amino Acids

99.84

Weight (kDa)

8.73

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	222 - 305	1.2e-19	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	432 - 513	8.7e-14	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	642 - 729	2.3e-18	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	829
AasI	GACNNNNNNGTC	2 cut(s)	623, 1526
AatII	GACGTC	1 cut(s)	788
Acc36I	ACCTGC	1 cut(s)	829
AccB1I	GGYRCC	2 cut(s)	62, 271
AccBSI	CCGCTC	1 cut(s)	859
AccI	GTMKAC	3 cut(s)	1140, 1993, 2148
AccII	CGCG	2 cut(s)	277, 2605
AciI	CCGC	9 cut(s)	275, 277, 392, 395, 510, 859, 955, 1247, 2582
AcoI	YGGCCR	1 cut(s)	1181
AcsI	RAATTY	7 cut(s)	116, 313, 377, 490, 975, 1546, 2576
AcuI	CTGAAG	2 cut(s)	1491, 1590
AcyI	GRCGYC	2 cut(s)	272, 785
AfaI	GTAC	9 cut(s)	346, 386, 911, 1687, 1696, 2014, 2045, 2183, 2387
AfiI	CCNNNNNNNGG	3 cut(s)	1093, 2053, 2554
AhlI	ACTAGT	1 cut(s)	1454
AjiI	CACGTC	1 cut(s)	1997
AjnI	CCWGG	8 cut(s)	164, 266, 593, 1086, 1183, 1222, 1234, 1628
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	4 cut(s)	1094, 1700, 2161, 2212
AoxI	GGCC	5 cut(s)	263, 279, 1162, 1181, 1626
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	8 cut(s)	141, 1363, 1366, 1501, 1903, 2303, 2584, 2600
ApoI	RAATTY	7 cut(s)	116, 313, 377, 490, 975, 1546, 2576
Asp700I	GAANNNNTTC	1 cut(s)	1976
AspLEI	GCGC	3 cut(s)	274, 2605, 2607
AspS9I	GGNCC	5 cut(s)	263, 264, 279, 815, 1163
AsuC2I	CCSGG	2 cut(s)	250, 2186
AsuHPI	GGTGA	6 cut(s)	161, 578, 583, 984, 1777, 2080
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	2 cut(s)	15, 267
BalI	TGGCCA	1 cut(s)	1183
BanI	GGYRCC	2 cut(s)	62, 271
BanII	GRGCYC	2 cut(s)	53, 267
BbsI	GAAGAC	4 cut(s)	621, 788, 1479, 1522
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	680
BbvI	GCAGC	8 cut(s)	153, 1353, 1375, 1488, 1915, 2315, 2596, 2612
BccI	CCATC	7 cut(s)	231, 329, 545, 771, 1642, 1903, 2003
BceAI	ACGGC	1 cut(s)	266
BcgI	CGANNNNNNTGC	2 cut(s)	1636, 1670
BciT130I	CCWGG	8 cut(s)	166, 268, 595, 1088, 1185, 1224, 1236, 1630
BciVI	GTATCC	2 cut(s)	2347, 2419
BclI	TGATCA	1 cut(s)	2086
BcnI	CCSGG	2 cut(s)	250, 2186
BcoDI	GTCTC	4 cut(s)	1094, 1700, 2161, 2212
BcuI	ACTAGT	1 cut(s)	1454
BfaI	CTAG	7 cut(s)	216, 495, 723, 1323, 1455, 2108, 2564
BfmI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
BfoI	RGCGCY	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	829
BfuI	GTATCC	2 cut(s)	2347, 2419
BglII	AGATCT	1 cut(s)	2333
BlpI	GCTNAGC	1 cut(s)	1375
Bme18I	GGWCC	1 cut(s)	815
BmgBI	CACGTC	1 cut(s)	1997
BmgT120I	GGNCC	5 cut(s)	263, 264, 279, 815, 1163
BmiI	GGNNCC	5 cut(s)	64, 91, 265, 273, 1023
BmrI	ACTGGG	1 cut(s)	9
BmsI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2437
BmuI	ACTGGG	1 cut(s)	9
BpiI	GAAGAC	4 cut(s)	621, 788, 1479, 1522
BpmI	CTGGAG	2 cut(s)	904, 2531
Bpu10I	CCTNAGC	2 cut(s)	680, 689
Bpu1102I	GCTNAGC	1 cut(s)	1375
BpuEI	CTTGAG	1 cut(s)	732
BpuMI	CCSGG	2 cut(s)	250, 2186
BsaBI	GATNNNNATC	2 cut(s)	1749, 2451
BsaHI	GRCGYC	2 cut(s)	272, 785
BsaI	GGTCTC	1 cut(s)	2212
BsaXI	ACNNNNNCTCC	6 cut(s)	524, 554, 622, 652, 2141, 2171
Bsc4I	CCNNNNNNNGG	3 cut(s)	1093, 2053, 2554
Bse1I	ACTGG	3 cut(s)	15, 871, 2042
Bse3DI	GCAATG	3 cut(s)	307, 337, 387
Bse8I	GATNNNNATC	2 cut(s)	1749, 2451
BseBI	CCWGG	8 cut(s)	166, 268, 595, 1088, 1185, 1224, 1236, 1630
BseGI	GGATG	5 cut(s)	69, 1082, 1193, 1720, 1750
BseJI	GATNNNNATC	2 cut(s)	1749, 2451
BseLI	CCNNNNNNNGG	3 cut(s)	1093, 2053, 2554
BseMI	GCAATG	3 cut(s)	307, 337, 387
BseMII	CTCAG	5 cut(s)	660, 671, 1077, 2321, 2517
BseNI	ACTGG	3 cut(s)	15, 871, 2042
BsePI	GCGCGC	1 cut(s)	2603
BseRI	GAGGAG	6 cut(s)	82, 646, 649, 697, 1895, 1949
BseSI	GKGCMC	2 cut(s)	15, 267
BseXI	GCAGC	8 cut(s)	153, 1353, 1375, 1488, 1915, 2315, 2596, 2612
BsgI	GTGCAG	2 cut(s)	807, 2330
Bsh1236I	CGCG	2 cut(s)	277, 2605
BshFI	GGCC	5 cut(s)	265, 281, 1164, 1183, 1628
BshNI	GGYRCC	2 cut(s)	62, 271
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	250, 2185
BslI	CCNNNNNNNGG	3 cut(s)	1093, 2053, 2554
BsmAI	GTCTC	4 cut(s)	1094, 1700, 2161, 2212
BsmI	GAATGC	2 cut(s)	846, 2077
BsnI	GGCC	5 cut(s)	265, 281, 1164, 1183, 1628
Bso31I	GGTCTC	1 cut(s)	2212
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	15, 53, 267
Bsp1407I	TGTACA	2 cut(s)	909, 2385
Bsp143I	GATC	4 cut(s)	435, 1277, 2086, 2333
Bsp1720I	GCTNAGC	1 cut(s)	1375
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	9 cut(s)	275, 277, 392, 395, 510, 859, 955, 1247, 2582
BspANI	GGCC	5 cut(s)	265, 281, 1164, 1183, 1628
BspCNI	CTCAG	5 cut(s)	661, 672, 1076, 2322, 2516
BspFNI	CGCG	2 cut(s)	277, 2605
BspHI	TCATGA	2 cut(s)	769, 1848
BspLI	GGNNCC	5 cut(s)	64, 91, 265, 273, 1023
BspMAI	CTGCAG	2 cut(s)	1371, 1561
BspMI	ACCTGC	1 cut(s)	829
BspQI	GCTCTTC	1 cut(s)	2292
BspT107I	GGYRCC	2 cut(s)	62, 271
BspTNI	GGTCTC	1 cut(s)	2212
BsrBI	CCGCTC	1 cut(s)	859
BsrDI	GCAATG	3 cut(s)	307, 337, 387
BsrGI	TGTACA	2 cut(s)	909, 2385
BsrI	ACTGG	3 cut(s)	15, 871, 2042
BssHII	GCGCGC	1 cut(s)	2603
BssMI	GATC	4 cut(s)	435, 1277, 2086, 2333
BssNI	GRCGYC	2 cut(s)	272, 785
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	8 cut(s)	166, 268, 595, 1088, 1185, 1224, 1236, 1630
Bst4CI	ACNGT	6 cut(s)	620, 1000, 1110, 2017, 2048, 2359
Bst6I	CTCTTC	5 cut(s)	669, 830, 1092, 1611, 2292
BstACI	GRCGYC	2 cut(s)	272, 785
BstAPI	GCANNNNNTGC	1 cut(s)	1424
BstAUI	TGTACA	2 cut(s)	909, 2385
BstC8I	GCNNGC	9 cut(s)	279, 953, 1035, 1320, 1794, 1827, 1908, 2605, 2643
BstDSI	CCRYGG	3 cut(s)	58, 275, 581
BstF5I	GGATG	5 cut(s)	69, 1082, 1193, 1720, 1750
BstFNI	CGCG	2 cut(s)	277, 2605
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	3 cut(s)	274, 2605, 2607
BstKTI	GATC	4 cut(s)	438, 1280, 2089, 2336
BstMAI	GTCTC	4 cut(s)	1094, 1700, 2161, 2212
BstMBI	GATC	4 cut(s)	435, 1277, 2086, 2333
BstMWI	GCNNNNNNNGC	7 cut(s)	271, 278, 685, 1424, 1862, 2117, 2275
BstNI	CCWGG	8 cut(s)	166, 268, 595, 1088, 1185, 1224, 1236, 1630
BstNSI	RCATGY	3 cut(s)	1219, 1796, 2029
BstSFI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
BstSLI	GKGCMC	2 cut(s)	15, 267
BstUI	CGCG	2 cut(s)	277, 2605
BstV1I	GCAGC	8 cut(s)	153, 1353, 1375, 1488, 1915, 2315, 2596, 2612
BstV2I	GAAGAC	4 cut(s)	621, 788, 1479, 1522
BstX2I	RGATCY	1 cut(s)	2333
BstYI	RGATCY	1 cut(s)	2333
BsuI	GTATCC	2 cut(s)	2347, 2419
BsuRI	GGCC	5 cut(s)	265, 281, 1164, 1183, 1628
BtgI	CCRYGG	3 cut(s)	58, 275, 581
BtgZI	GCGATG	2 cut(s)	882, 1661
BtrI	CACGTC	1 cut(s)	1997
BtsCI	GGATG	5 cut(s)	69, 1082, 1193, 1720, 1750
BtsI	GCAGTG	1 cut(s)	1386
BtsIMutI	CAGTG	6 cut(s)	1020, 1386, 1427, 1566, 2022, 2035
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	9 cut(s)	279, 953, 1035, 1320, 1794, 1827, 1908, 2605, 2643
CciI	TCATGA	2 cut(s)	769, 1848
CfoI	GCGC	3 cut(s)	274, 2605, 2607
Cfr13I	GGNCC	5 cut(s)	263, 264, 279, 815, 1163
Cfr42I	CCGCGG	1 cut(s)	278
CseI	GACGC	1 cut(s)	1777
Csp6I	GTAC	9 cut(s)	345, 385, 910, 1686, 1695, 2013, 2044, 2182, 2386
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviQI	GTAC	9 cut(s)	345, 385, 910, 1686, 1695, 2013, 2044, 2182, 2386
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	4 cut(s)	437, 1279, 2088, 2335
DpnII	GATC	4 cut(s)	435, 1277, 2086, 2333
DraI	TTTAAA	1 cut(s)	1293
DrdI	GACNNNNNNGTC	2 cut(s)	623, 1526
DseDI	GACNNNNNNGTC	2 cut(s)	623, 1526
EaeI	YGGCCR	1 cut(s)	1181
Eam1104I	CTCTTC	5 cut(s)	669, 830, 1092, 1611, 2292
EarI	CTCTTC	5 cut(s)	669, 830, 1092, 1611, 2292
EciI	GGCGGA	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	2 cut(s)	53, 267
Eco31I	GGTCTC	1 cut(s)	2212
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	1491, 1590
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	1163
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	8 cut(s)	164, 266, 593, 1086, 1183, 1222, 1234, 1628
EcoT14I	CCWWGG	1 cut(s)	581
EcoT22I	ATGCAT	2 cut(s)	846, 2031
EcoT38I	GRGCYC	2 cut(s)	53, 267
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	581
FalI	AAGNNNNNCTT	6 cut(s)	1508, 1540, 1814, 1846, 2233, 2265
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	2086
FblI	GTMKAC	3 cut(s)	1140, 1993, 2148
FokI	GGATG	5 cut(s)	56, 1069, 1200, 1727, 1757
FriOI	GRGCYC	2 cut(s)	53, 267
FspBI	CTAG	7 cut(s)	216, 495, 723, 1323, 1455, 2108, 2564
GlaI	GCGC	3 cut(s)	273, 2604, 2606
GsuI	CTGGAG	2 cut(s)	904, 2531
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	5 cut(s)	265, 281, 1164, 1183, 1628
HapII	CCGG	2 cut(s)	250, 2185
HgaI	GACGC	1 cut(s)	1777
HhaI	GCGC	3 cut(s)	274, 2605, 2607
Hin1I	GRCGYC	2 cut(s)	272, 785
Hin6I	GCGC	3 cut(s)	272, 2603, 2605
HinP1I	GCGC	3 cut(s)	272, 2603, 2605
HincII	GTYRAC	2 cut(s)	183, 1449
HindII	GTYRAC	2 cut(s)	183, 1449
HindIII	AAGCTT	5 cut(s)	1811, 1823, 1955, 1974, 2247
HpaII	CCGG	2 cut(s)	250, 2185
HphI	GGTGA	6 cut(s)	161, 578, 583, 984, 1777, 2080
Hpy188I	TCNGA	9 cut(s)	297, 676, 708, 790, 1066, 1075, 1256, 2292, 2338
Hpy99I	CGWCG	1 cut(s)	2447
HpyCH4III	ACNGT	6 cut(s)	620, 1000, 1110, 2017, 2048, 2359
HpyCH4IV	ACGT	5 cut(s)	785, 1435, 1996, 2213, 2257
HpyF10VI	GCNNNNNNNGC	7 cut(s)	271, 278, 685, 1424, 1862, 2117, 2275
HpySE526I	ACGT	5 cut(s)	785, 1435, 1996, 2213, 2257
Hsp92I	GRCGYC	2 cut(s)	272, 785
HspAI	GCGC	3 cut(s)	272, 2603, 2605
KasI	GGCGCC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	2086
KspI	CCGCGG	1 cut(s)	278
Kzo9I	GATC	4 cut(s)	435, 1277, 2086, 2333
LguI	GCTCTTC	1 cut(s)	2292
LmnI	GCTCC	5 cut(s)	56, 95, 856, 1224, 2624
Lsp1109I	GCAGC	8 cut(s)	153, 1353, 1375, 1488, 1915, 2315, 2596, 2612
LweI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2437
MaeI	CTAG	7 cut(s)	216, 495, 723, 1323, 1455, 2108, 2564
MaeII	ACGT	5 cut(s)	785, 1435, 1996, 2213, 2257
MaeIII	GTNAC	4 cut(s)	742, 1190, 1564, 1765
MalI	GATC	4 cut(s)	437, 1279, 2088, 2335
MbiI	CCGCTC	1 cut(s)	859
MboI	GATC	4 cut(s)	435, 1277, 2086, 2333
MflI	RGATCY	1 cut(s)	2333
MhlI	GDGCHC	3 cut(s)	15, 53, 267
MlsI	TGGCCA	1 cut(s)	1183
MluNI	TGGCCA	1 cut(s)	1183
Mly113I	GGCGCC	1 cut(s)	272
MlyI	GAGTC	6 cut(s)	524, 655, 680, 1702, 1892, 2552
MmeI	TCCRAC	5 cut(s)	206, 267, 1267, 1722, 2602
Mox20I	TGGCCA	1 cut(s)	1183
Mph1103I	ATGCAT	2 cut(s)	846, 2031
MroXI	GAANNNNTTC	1 cut(s)	1976
MscI	TGGCCA	1 cut(s)	1183
MseI	TTAA	4 cut(s)	371, 1292, 1310, 1787
MslI	CAYNNNNRTG	1 cut(s)	2373
Msp20I	TGGCCA	1 cut(s)	1183
MspA1I	CMGCKG	4 cut(s)	277, 1366, 1691, 2306
MspI	CCGG	2 cut(s)	250, 2185
Mva1269I	GAATGC	2 cut(s)	846, 2077
MvaI	CCWGG	8 cut(s)	166, 268, 595, 1088, 1185, 1224, 1236, 1630
MvnI	CGCG	2 cut(s)	277, 2605
MwoI	GCNNNNNNNGC	7 cut(s)	271, 278, 685, 1424, 1862, 2117, 2275
NarI	GGCGCC	1 cut(s)	272
NciI	CCSGG	2 cut(s)	250, 2186
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	4 cut(s)	435, 1277, 2086, 2333
NlaIV	GGNNCC	5 cut(s)	64, 91, 265, 273, 1023
NmuCI	GTSAC	3 cut(s)	1190, 1564, 1765
NsiI	ATGCAT	2 cut(s)	846, 2031
NspI	RCATGY	3 cut(s)	1219, 1796, 2029
PaeI	GCATGC	1 cut(s)	1796
PagI	TCATGA	2 cut(s)	769, 1848
PaqCI	CACCTGC	1 cut(s)	829
PasI	CCCWGGG	3 cut(s)	267, 594, 1223
PauI	GCGCGC	1 cut(s)	2603
PciSI	GCTCTTC	1 cut(s)	2292
PctI	GAATGC	2 cut(s)	846, 2077
PdmI	GAANNNNTTC	1 cut(s)	1976
PfeI	GAWTC	6 cut(s)	97, 245, 766, 1170, 2227, 2399
PflFI	GACNNNGTC	1 cut(s)	2153
PfoI	TCCNGGA	1 cut(s)	248
PleI	GAGTC	6 cut(s)	523, 655, 679, 1702, 1891, 2552
PluTI	GGCGCC	1 cut(s)	275
PpsI	GAGTC	6 cut(s)	523, 655, 679, 1702, 1891, 2552
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	8 cut(s)	164, 266, 593, 1086, 1183, 1222, 1234, 1628
PspGI	CCWGG	8 cut(s)	164, 266, 593, 1086, 1183, 1222, 1234, 1628
PspN4I	GGNNCC	5 cut(s)	64, 91, 265, 273, 1023
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	5 cut(s)	263, 264, 279, 815, 1163
PstI	CTGCAG	2 cut(s)	1371, 1561
PsuI	RGATCY	1 cut(s)	2333
PsyI	GACNNNGTC	1 cut(s)	2153
PteI	GCGCGC	1 cut(s)	2603
PvuII	CAGCTG	3 cut(s)	1366, 1691, 2306
RsaI	GTAC	9 cut(s)	346, 386, 911, 1687, 1696, 2014, 2045, 2183, 2387
RsaNI	GTAC	9 cut(s)	345, 385, 910, 1686, 1695, 2013, 2044, 2182, 2386
RseI	CAYNNNNRTG	1 cut(s)	2373
SacI	GAGCTC	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	2292
SaqAI	TTAA	4 cut(s)	371, 1292, 1310, 1787
Sau3AI	GATC	4 cut(s)	435, 1277, 2086, 2333
Sau96I	GGNCC	5 cut(s)	263, 264, 279, 815, 1163
SchI	GAGTC	6 cut(s)	524, 655, 680, 1702, 1892, 2552
SduI	GDGCHC	3 cut(s)	15, 53, 267
SfaNI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2437
SfcI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
SfoI	GGCGCC	1 cut(s)	273
Sfr303I	CCGCGG	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	2373
SmlI	CTYRAG	1 cut(s)	747
SmoI	CTYRAG	1 cut(s)	747
SpeI	ACTAGT	1 cut(s)	1454
SphI	GCATGC	1 cut(s)	1796
SsiI	CCGC	9 cut(s)	275, 277, 392, 395, 510, 859, 955, 1247, 2582
SspDI	GGCGCC	1 cut(s)	271
SspI	AATATT	1 cut(s)	1785
SspMI	CTAG	7 cut(s)	216, 495, 723, 1323, 1455, 2108, 2564
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	6 cut(s)	620, 1000, 1110, 2017, 2048, 2359
TaiI	ACGT	5 cut(s)	788, 1438, 1999, 2216, 2260
TaqI	TCGA	7 cut(s)	95, 438, 810, 1168, 1354, 1510, 1898
TaqII	GACCGA	1 cut(s)	613
TatI	WGTACW	3 cut(s)	344, 909, 2385
TauI	GCSGC	2 cut(s)	277, 395
TfiI	GAWTC	6 cut(s)	97, 245, 766, 1170, 2227, 2399
Tru1I	TTAA	4 cut(s)	371, 1292, 1310, 1787
Tru9I	TTAA	4 cut(s)	371, 1292, 1310, 1787
TscAI	CASTG	6 cut(s)	1020, 1386, 1434, 1573, 2022, 2042
TseFI	GTSAC	3 cut(s)	1190, 1564, 1765
TseI	GCWGC	8 cut(s)	141, 1363, 1366, 1501, 1903, 2303, 2584, 2600
Tsp45I	GTSAC	3 cut(s)	1190, 1564, 1765
TspGWI	ACGGA	2 cut(s)	47, 928
TspRI	CASTG	6 cut(s)	1020, 1386, 1434, 1573, 2022, 2042
Tth111I	GACNNNGTC	1 cut(s)	2153
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	7 cut(s)	116, 313, 377, 490, 975, 1546, 2576
XbaI	TCTAGA	1 cut(s)	494
XceI	RCATGY	3 cut(s)	1219, 1796, 2029
XmiI	GTMKAC	3 cut(s)	1140, 1993, 2148
XmnI	GAANNNNTTC	1 cut(s)	1976
XspI	CTAG	7 cut(s)	216, 495, 723, 1323, 1455, 2108, 2564
ZraI	GACGTC	1 cut(s)	786
Zsp2I	ATGCAT	2 cut(s)	846, 2031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.