Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Forward (+)

53320408 .. 53325078

Gene Structure 4671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034740

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGACTCTTGTGCCCAGTCGCCAACTTTACCCAACGAGCTTATTGGAGAGCTCCTTGTCAAAGTTCCATGGCACCCACATCCACCTGTTCAGGTATGGCTCCTCAATTCCTTACAAGAAGCAGAAATTCCATGCAACCCACTACTTTATCAGCTCTGGTGAGCAAAACCCACCCAGGAAATCAAGTTTGTTGATTTCTCAATACAAACCCACCAAGAATTTATCTAGTTGTAGTTGGATTGATAGATGGAATGAATGCCGGAAACAAAATGGGCCCAGGGCGCCTCGGGCCGTGGTGGACTATCAGAGCAATGAAAGTGGGAATTTGAGTAGTTCAGGCAATGATGGGGGTAGTACAATGGACAAAATTGTGGAGAAATTAAAGAAATTTGGGTACATTGCGGCGGATAAGAATGAGGGTAAAGGTCAAGGGAGGGAGAGAGTGATCGAAAAAGGTTCTGTGGAGGATATATTTTATGTTGAGGAAGGAATGTTGCCGAATTCTAGAGGTGGGTTCTCGGCAGAATCGCCATTAGGGGTGGAGAATGTGTTTGGAGATGATGGTGGTGAGGTGAGGTTTCCCTGGGAAAAGCCCAGGGAGAAAGAAAAGGAAGAAGACGGTTCAGTCAGGAGGAGGAGTAGGACTTCATTGGCAGAATTGACTCTTCCTGAGTCAGAGCTGAGGAGGCTAAGGAATATGACATTTCAGAAGAAGCACAAGACTAGGATTGGAGGTGCTGGTGTTACTCAAGCAGTAGTGGAGATGATTCATGAGAGATGGAAGACGTCCGAGATTGTGAGATTGAAAATCGAAGGTCCACCTGCACTCAACATGAAGAGAATGCATGAGATATTGGAGCGGAAAACTGGTGGTTTGGTGATCTGGAGGTCTGGCACATCGCTTTCTTTGTACAGAGGTGTGAGCTATGAAGTTCCTTCCGTGCAACTAAGCAAGCGGATATTCAAGAGAAATAAAATTTCTTCTTCATCTTCACCAACTGTAGCTGATAAGTCAGTGGGGGAACCTTCTGTGATTGCTTCTTATAGTATCGTAAAGACACCCTCAAAAGTGTCGGAGAATACATCCCAGGAGAAGGAAGAGACAGAACGGTTGCCAGAAGTGAAGTATGAAGATGAAGTAGACCAACTTTTAGATAGCATAGGCCCTCGATTCAAGGATTGGCCAGGATGTGACCCATTACCTGTAGATGCAGACATGCTCCCAGGGATAGTTCCTGGTTTCCAACCGCCATTCAGAATACTTCCTTATGGAGTGCGATCAACTCTTGGTTTAAAGGAGGCAACATCTTTAAGAAGGCTTGCTAGGGTTCTTCCACCACATTTTGCTTTAGGTCGAAATAGGCAGCTGCAGGGCTTAGCAGTGGCTATGAGTAAACTATGGGAAAGAAGTTTGATTGCAAAGATTGCACTGAAACGTGGTGTTCAGTTGACTACTAGTGAGAGAATGGCTGAAGACATCAAGAAATTGACAGGGGGTGTGCTGCTATCTCGAAACAAGGATTTCTTGGTCTTCTATAGGGGAAAGAATTTTTTGTCTGCAGAAGTCACTGAAGCATTAGTGGAAAGGGAGAGATTGGCAAAATCCCTTCAAGATGAAGAGGAACAGGCCAGGTTGAGAGCATCAGCGATGGTTATGCCAAGTGTTGAACCAGCTCAACATTTTGGTACAGCTGGTACACTTGGGGAGACTCTGGATGCAGATGCTAAGTGGGGAAAGAGATTGGATGTTCATCATAAGGAGCAGGTGACGCAAGAAGCAGGAATATTAAGGCATGCCAATCTGGTTAGAAAGCTTGAACAGAAGCTTGCCTTTGCTGAACGAAAGCTCATGAGAGCTGAACAAGCCTTATCTAAGGTAGAGGAGTCATTGAAACCATCGAAGCAGCAAGCAGACCCAGAAAGCATTACTGATGAGGAGAGGTTTATGTTTCGTAAGCTTGGTTTGAAGATGAAAGCTTTCCTACTACTTGGTAGACGTGGAGTTTTTGATGGTACAGTGGAGAACATGCATTTGCACTGGAAGTACCGTGAATTGGTCAAGATAATGGTGAATGCTAAAACTTTTGATCAAGTAAAAAAAATTGCATTAGCACTTGAAGCTGAAAGTGGAGGTGTCTTGGTTTCAGTAGACAAAGTCTCCAAAAAATATGCTATAATTGTGTACCGGGGAAATGACTACCAGCGACCTTCTACGTTGAGACCAAAGAATCTTTTGACCAAAAGGAAAGCTTTGGCACGTTCTATTGAGCTTCAAAGGCAGGAGGCTCTTCTGAAACATATTGCAGCTGTGCAGAGTAGGGTGGATAGACTGAGATCTGAAATTGAACAAATGGATACTGCGAAACATCATGGAGATGAAGCATTGTACAACAAATTAGATTCTTCTTATCCTACTGATGATGAGGATACAGAGGAAGAAGGTGACGATGCTTATCTTGAAACATATAACAGCGAAAATGATGGTGAAGAAGAAAGCAGTTTCTCAGTTCACAATACTTCCACCGAAACCAATTTTCCTTGTCATCTCCAGAATGAGGACTCTCTAGCAGAATTGGAATTTCCGCAGCAACATATACACACAACGCACAAGGGTATGAGTGTTGGAGCAGACCCTGATGAGCAAGATAACTGCTTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

887

Amino Acids

100.08

Weight (kDa)

8.77

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	222 - 305	1.2e-19	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	432 - 513	8.7e-14	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	642 - 729	1.3e-18	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	829, 1753
AasI	GACNNNNNNGTC	1 cut(s)	623
AatII	GACGTC	1 cut(s)	788
Acc36I	ACCTGC	2 cut(s)	829, 1753
AccB1I	GGYRCC	2 cut(s)	71, 280
AccBSI	CCGCTC	1 cut(s)	859
AccI	GTMKAC	3 cut(s)	1140, 1993, 2148
AciI	CCGC	6 cut(s)	401, 404, 859, 955, 1247, 2582
AcoI	YGGCCR	1 cut(s)	1181
AcsI	RAATTY	8 cut(s)	125, 217, 322, 386, 499, 975, 1546, 2576
AcuI	CTGAAG	2 cut(s)	1491, 1590
AcyI	GRCGYC	2 cut(s)	281, 785
AfaI	GTAC	9 cut(s)	355, 395, 911, 1687, 1696, 2014, 2045, 2183, 2387
AfiI	CCNNNNNNNGG	3 cut(s)	1093, 2053, 2554
AhlI	ACTAGT	1 cut(s)	1454
AjiI	CACGTC	1 cut(s)	1997
AjnI	CCWGG	9 cut(s)	173, 275, 581, 593, 1086, 1183, 1222, 1234, 1628
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	4 cut(s)	1094, 1700, 2161, 2212
AlwNI	CAGNNNCTG	1 cut(s)	2633
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	5 cut(s)	272, 288, 1162, 1181, 1626
ApaI	GGGCCC	1 cut(s)	276
ApeKI	GCWGC	6 cut(s)	1363, 1366, 1501, 1903, 2303, 2584
ApoI	RAATTY	8 cut(s)	125, 217, 322, 386, 499, 975, 1546, 2576
Asp700I	GAANNNNTTC	1 cut(s)	1976
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
AsuC2I	CCSGG	1 cut(s)	2186
AsuHPI	GGTGA	9 cut(s)	170, 578, 583, 889, 984, 1777, 2080, 2453, 2495
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	2 cut(s)	15, 276
BalI	TGGCCA	1 cut(s)	1183
BanI	GGYRCC	2 cut(s)	71, 280
BanII	GRGCYC	2 cut(s)	53, 276
BbsI	GAAGAC	4 cut(s)	621, 788, 1479, 1522
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	680
BbvI	GCAGC	6 cut(s)	1353, 1375, 1488, 1915, 2315, 2596
BccI	CCATC	8 cut(s)	240, 338, 554, 771, 1642, 1903, 2003, 2474
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	1636, 1670
BciT130I	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
BciVI	GTATCC	2 cut(s)	2347, 2419
BclI	TGATCA	1 cut(s)	2086
BcnI	CCSGG	1 cut(s)	2186
BcoDI	GTCTC	4 cut(s)	1094, 1700, 2161, 2212
BcuI	ACTAGT	1 cut(s)	1454
BfaI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2564
BfmI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
BfoI	RGCGCY	1 cut(s)	284
BfuAI	ACCTGC	2 cut(s)	829, 1753
BfuI	GTATCC	2 cut(s)	2347, 2419
BglII	AGATCT	1 cut(s)	2333
BisI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2304, 2585
BlpI	GCTNAGC	1 cut(s)	1375
BlsI	GCNGC	7 cut(s)	403, 1365, 1368, 1503, 1905, 2305, 2586
Bme18I	GGWCC	1 cut(s)	815
BmeT110I	CYCGRG	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	1997
BmgT120I	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
BmiI	GGNNCC	5 cut(s)	73, 100, 274, 282, 1023
BmrI	ACTGGG	1 cut(s)	9
BmsI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2437
BmuI	ACTGGG	1 cut(s)	9
BpiI	GAAGAC	4 cut(s)	621, 788, 1479, 1522
BpmI	CTGGAG	2 cut(s)	904, 2531
Bpu10I	CCTNAGC	2 cut(s)	680, 689
Bpu1102I	GCTNAGC	1 cut(s)	1375
BpuEI	CTTGAG	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	2186
BsaBI	GATNNNNATC	2 cut(s)	1749, 2451
BsaHI	GRCGYC	2 cut(s)	281, 785
BsaI	GGTCTC	1 cut(s)	2212
BsaXI	ACNNNNNCTCC	6 cut(s)	533, 563, 622, 652, 2141, 2171
Bsc4I	CCNNNNNNNGG	3 cut(s)	1093, 2053, 2554
Bse1I	ACTGG	3 cut(s)	15, 871, 2042
Bse3DI	GCAATG	3 cut(s)	316, 346, 396
Bse8I	GATNNNNATC	2 cut(s)	1749, 2451
BseBI	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
BseGI	GGATG	5 cut(s)	78, 1082, 1193, 1720, 1750
BseJI	GATNNNNATC	2 cut(s)	1749, 2451
BseLI	CCNNNNNNNGG	3 cut(s)	1093, 2053, 2554
BseMI	GCAATG	3 cut(s)	316, 346, 396
BseMII	CTCAG	4 cut(s)	660, 671, 2321, 2517
BseNI	ACTGG	3 cut(s)	15, 871, 2042
BseRI	GAGGAG	6 cut(s)	91, 646, 649, 697, 1895, 1949
BseSI	GKGCMC	2 cut(s)	15, 276
BseXI	GCAGC	6 cut(s)	1353, 1375, 1488, 1915, 2315, 2596
BsgI	GTGCAG	2 cut(s)	807, 2330
BshFI	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
BshNI	GGYRCC	2 cut(s)	71, 280
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	259, 2185
BslI	CCNNNNNNNGG	3 cut(s)	1093, 2053, 2554
BsmAI	GTCTC	4 cut(s)	1094, 1700, 2161, 2212
BsmI	GAATGC	3 cut(s)	260, 846, 2077
BsnI	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
Bso31I	GGTCTC	1 cut(s)	2212
BsoBI	CYCGRG	1 cut(s)	285
Bsp120I	GGGCCC	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	15, 53, 276
Bsp1407I	TGTACA	2 cut(s)	909, 2385
Bsp143I	GATC	5 cut(s)	444, 879, 1277, 2086, 2333
Bsp1720I	GCTNAGC	1 cut(s)	1375
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	6 cut(s)	401, 404, 859, 955, 1247, 2582
BspANI	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
BspCNI	CTCAG	4 cut(s)	661, 672, 2322, 2516
BspHI	TCATGA	2 cut(s)	769, 1848
BspLI	GGNNCC	5 cut(s)	73, 100, 274, 282, 1023
BspMAI	CTGCAG	2 cut(s)	1371, 1561
BspMI	ACCTGC	2 cut(s)	829, 1753
BspQI	GCTCTTC	1 cut(s)	2292
BspT107I	GGYRCC	2 cut(s)	71, 280
BspTNI	GGTCTC	1 cut(s)	2212
BsrBI	CCGCTC	1 cut(s)	859
BsrDI	GCAATG	3 cut(s)	316, 346, 396
BsrGI	TGTACA	2 cut(s)	909, 2385
BsrI	ACTGG	3 cut(s)	15, 871, 2042
BssMI	GATC	5 cut(s)	444, 879, 1277, 2086, 2333
BssNI	GRCGYC	2 cut(s)	281, 785
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
Bst4CI	ACNGT	5 cut(s)	620, 1000, 1110, 2017, 2048
Bst6I	CTCTTC	5 cut(s)	669, 830, 1092, 1611, 2292
BstACI	GRCGYC	2 cut(s)	281, 785
BstAPI	GCANNNNNTGC	1 cut(s)	1424
BstAUI	TGTACA	2 cut(s)	909, 2385
BstC8I	GCNNGC	5 cut(s)	953, 1320, 1794, 1827, 1908
BstDEI	CTNAG	9 cut(s)	669, 680, 689, 947, 1375, 1725, 1872, 2330, 2503
BstDSI	CCRYGG	2 cut(s)	67, 291
BstF5I	GGATG	5 cut(s)	78, 1082, 1193, 1720, 1750
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	5 cut(s)	447, 882, 1280, 2089, 2336
BstMAI	GTCTC	4 cut(s)	1094, 1700, 2161, 2212
BstMBI	GATC	5 cut(s)	444, 879, 1277, 2086, 2333
BstMWI	GCNNNNNNNGC	8 cut(s)	280, 287, 685, 1424, 1768, 1862, 2117, 2275
BstNI	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
BstNSI	RCATGY	3 cut(s)	1219, 1796, 2029
BstSFI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
BstSLI	GKGCMC	2 cut(s)	15, 276
BstV1I	GCAGC	6 cut(s)	1353, 1375, 1488, 1915, 2315, 2596
BstV2I	GAAGAC	4 cut(s)	621, 788, 1479, 1522
BstX2I	RGATCY	1 cut(s)	2333
BstYI	RGATCY	1 cut(s)	2333
BsuI	GTATCC	2 cut(s)	2347, 2419
BsuRI	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
BtgI	CCRYGG	2 cut(s)	67, 291
BtgZI	GCGATG	2 cut(s)	882, 1661
BtrI	CACGTC	1 cut(s)	1997
BtsCI	GGATG	5 cut(s)	78, 1082, 1193, 1720, 1750
BtsI	GCAGTG	1 cut(s)	1386
BtsIMutI	CAGTG	6 cut(s)	1020, 1386, 1427, 1566, 2022, 2035
BveI	ACCTGC	2 cut(s)	829, 1753
Cac8I	GCNNGC	5 cut(s)	953, 1320, 1794, 1827, 1908
CaiI	CAGNNNCTG	1 cut(s)	2633
CciI	TCATGA	2 cut(s)	769, 1848
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
CseI	GACGC	1 cut(s)	1777
Csp6I	GTAC	9 cut(s)	354, 394, 910, 1686, 1695, 2013, 2044, 2182, 2386
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviQI	GTAC	9 cut(s)	354, 394, 910, 1686, 1695, 2013, 2044, 2182, 2386
DdeI	CTNAG	9 cut(s)	669, 680, 689, 947, 1375, 1725, 1872, 2330, 2503
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	5 cut(s)	446, 881, 1279, 2088, 2335
DpnII	GATC	5 cut(s)	444, 879, 1277, 2086, 2333
DraI	TTTAAA	1 cut(s)	1293
DrdI	GACNNNNNNGTC	1 cut(s)	623
DseDI	GACNNNNNNGTC	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	1181
Eam1104I	CTCTTC	5 cut(s)	669, 830, 1092, 1611, 2292
EarI	CTCTTC	5 cut(s)	669, 830, 1092, 1611, 2292
EciI	GGCGGA	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	2 cut(s)	53, 276
Eco31I	GGTCTC	1 cut(s)	2212
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	1491, 1590
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	1163
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	9 cut(s)	173, 275, 581, 593, 1086, 1183, 1222, 1234, 1628
EcoT14I	CCWWGG	1 cut(s)	67
EcoT22I	ATGCAT	2 cut(s)	846, 2031
EcoT38I	GRGCYC	2 cut(s)	53, 276
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	67
FalI	AAGNNNNNCTT	6 cut(s)	1508, 1540, 1814, 1846, 2233, 2265
FbaI	TGATCA	1 cut(s)	2086
FblI	GTMKAC	3 cut(s)	1140, 1993, 2148
Fnu4HI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2304, 2585
FokI	GGATG	5 cut(s)	65, 1069, 1200, 1727, 1757
FriOI	GRGCYC	2 cut(s)	53, 276
Fsp4HI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2304, 2585
FspBI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2564
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2304, 2585
GsuI	CTGGAG	2 cut(s)	904, 2531
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	5 cut(s)	274, 290, 1164, 1183, 1628
HapII	CCGG	2 cut(s)	259, 2185
HgaI	GACGC	1 cut(s)	1777
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	2 cut(s)	281, 785
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	1449
HindII	GTYRAC	1 cut(s)	1449
HindIII	AAGCTT	5 cut(s)	1811, 1823, 1955, 1974, 2247
HpaII	CCGG	2 cut(s)	259, 2185
HphI	GGTGA	9 cut(s)	170, 578, 583, 889, 984, 1777, 2080, 2453, 2495
Hpy188I	TCNGA	8 cut(s)	306, 676, 708, 790, 1075, 1256, 2292, 2338
HpyAV	CCTTC	9 cut(s)	479, 806, 945, 1035, 1087, 1308, 1616, 2217, 2432
HpyCH4III	ACNGT	5 cut(s)	620, 1000, 1110, 2017, 2048
HpyCH4IV	ACGT	5 cut(s)	785, 1435, 1996, 2213, 2257
HpyF10VI	GCNNNNNNNGC	8 cut(s)	280, 287, 685, 1424, 1768, 1862, 2117, 2275
HpyF3I	CTNAG	9 cut(s)	669, 680, 689, 947, 1375, 1725, 1872, 2330, 2503
HpySE526I	ACGT	5 cut(s)	785, 1435, 1996, 2213, 2257
Hsp92I	GRCGYC	2 cut(s)	281, 785
HspAI	GCGC	1 cut(s)	281
KasI	GGCGCC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	2086
Kzo9I	GATC	5 cut(s)	444, 879, 1277, 2086, 2333
LguI	GCTCTTC	1 cut(s)	2292
LmnI	GCTCC	6 cut(s)	56, 104, 856, 1224, 1759, 2624
Lsp1109I	GCAGC	6 cut(s)	1353, 1375, 1488, 1915, 2315, 2596
LweI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2437
MaeI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2564
MaeII	ACGT	5 cut(s)	785, 1435, 1996, 2213, 2257
MaeIII	GTNAC	5 cut(s)	742, 1190, 1564, 1765, 2441
MalI	GATC	5 cut(s)	446, 881, 1279, 2088, 2335
MbiI	CCGCTC	1 cut(s)	859
MboI	GATC	5 cut(s)	444, 879, 1277, 2086, 2333
MflI	RGATCY	1 cut(s)	2333
MhlI	GDGCHC	3 cut(s)	15, 53, 276
MlsI	TGGCCA	1 cut(s)	1183
MluNI	TGGCCA	1 cut(s)	1183
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	5 cut(s)	655, 680, 1702, 1892, 2552
MmeI	TCCRAC	4 cut(s)	215, 1053, 1267, 2602
Mox20I	TGGCCA	1 cut(s)	1183
Mph1103I	ATGCAT	2 cut(s)	846, 2031
MroXI	GAANNNNTTC	1 cut(s)	1976
MscI	TGGCCA	1 cut(s)	1183
MseI	TTAA	4 cut(s)	380, 1292, 1310, 1787
MslI	CAYNNNNRTG	1 cut(s)	2373
Msp20I	TGGCCA	1 cut(s)	1183
MspA1I	CMGCKG	3 cut(s)	1366, 1691, 2306
MspI	CCGG	2 cut(s)	259, 2185
Mva1269I	GAATGC	3 cut(s)	260, 846, 2077
MvaI	CCWGG	9 cut(s)	175, 277, 583, 595, 1088, 1185, 1224, 1236, 1630
MwoI	GCNNNNNNNGC	8 cut(s)	280, 287, 685, 1424, 1768, 1862, 2117, 2275
NarI	GGCGCC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	2186
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	5 cut(s)	444, 879, 1277, 2086, 2333
NlaIV	GGNNCC	5 cut(s)	73, 100, 274, 282, 1023
NmeAIII	GCCGAG	1 cut(s)	497
NmuCI	GTSAC	4 cut(s)	1190, 1564, 1765, 2441
NsiI	ATGCAT	2 cut(s)	846, 2031
NspI	RCATGY	3 cut(s)	1219, 1796, 2029
PaeI	GCATGC	1 cut(s)	1796
PagI	TCATGA	2 cut(s)	769, 1848
PaqCI	CACCTGC	2 cut(s)	829, 1753
PasI	CCCWGGG	4 cut(s)	276, 582, 594, 1223
PciSI	GCTCTTC	1 cut(s)	2292
PctI	GAATGC	3 cut(s)	260, 846, 2077
PdmI	GAANNNNTTC	1 cut(s)	1976
PfeI	GAWTC	5 cut(s)	524, 766, 1170, 2227, 2399
PflFI	GACNNNGTC	1 cut(s)	2153
PkrI	GCNGC	7 cut(s)	403, 1365, 1368, 1503, 1905, 2305, 2586
PleI	GAGTC	5 cut(s)	655, 679, 1702, 1891, 2552
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	5 cut(s)	655, 679, 1702, 1891, 2552
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	9 cut(s)	173, 275, 581, 593, 1086, 1183, 1222, 1234, 1628
PspGI	CCWGG	9 cut(s)	173, 275, 581, 593, 1086, 1183, 1222, 1234, 1628
PspN4I	GGNNCC	5 cut(s)	73, 100, 274, 282, 1023
PspOMI	GGGCCC	1 cut(s)	272
PspPI	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
PstI	CTGCAG	2 cut(s)	1371, 1561
PstNI	CAGNNNCTG	1 cut(s)	2633
PsuI	RGATCY	1 cut(s)	2333
PsyI	GACNNNGTC	1 cut(s)	2153
PvuII	CAGCTG	3 cut(s)	1366, 1691, 2306
RsaI	GTAC	9 cut(s)	355, 395, 911, 1687, 1696, 2014, 2045, 2183, 2387
RsaNI	GTAC	9 cut(s)	354, 394, 910, 1686, 1695, 2013, 2044, 2182, 2386
RseI	CAYNNNNRTG	1 cut(s)	2373
SacI	GAGCTC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	2292
SaqAI	TTAA	4 cut(s)	380, 1292, 1310, 1787
SatI	GCNGC	7 cut(s)	402, 1364, 1367, 1502, 1904, 2304, 2585
Sau3AI	GATC	5 cut(s)	444, 879, 1277, 2086, 2333
Sau96I	GGNCC	5 cut(s)	272, 273, 288, 815, 1163
SchI	GAGTC	5 cut(s)	655, 680, 1702, 1892, 2552
SduI	GDGCHC	3 cut(s)	15, 53, 276
SfaNI	GCATC	5 cut(s)	1198, 1649, 1705, 1711, 2437
SfcI	CTRYAG	5 cut(s)	999, 1203, 1367, 1534, 1557
SfoI	GGCGCC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	2373
SmlI	CTYRAG	1 cut(s)	747
SmoI	CTYRAG	1 cut(s)	747
SpeI	ACTAGT	1 cut(s)	1454
SphI	GCATGC	1 cut(s)	1796
SsiI	CCGC	6 cut(s)	401, 404, 859, 955, 1247, 2582
SspDI	GGCGCC	1 cut(s)	280
SspI	AATATT	1 cut(s)	1785
SspMI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2564
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	5 cut(s)	620, 1000, 1110, 2017, 2048
TaiI	ACGT	5 cut(s)	788, 1438, 1999, 2216, 2260
TaqI	TCGA	6 cut(s)	447, 810, 1168, 1354, 1510, 1898
TatI	WGTACW	3 cut(s)	353, 909, 2385
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	5 cut(s)	524, 766, 1170, 2227, 2399
Tru1I	TTAA	4 cut(s)	380, 1292, 1310, 1787
Tru9I	TTAA	4 cut(s)	380, 1292, 1310, 1787
TscAI	CASTG	6 cut(s)	1020, 1386, 1434, 1573, 2022, 2042
TseFI	GTSAC	4 cut(s)	1190, 1564, 1765, 2441
TseI	GCWGC	6 cut(s)	1363, 1366, 1501, 1903, 2303, 2584
Tsp45I	GTSAC	4 cut(s)	1190, 1564, 1765, 2441
TspGWI	ACGGA	1 cut(s)	928
TspRI	CASTG	6 cut(s)	1020, 1386, 1434, 1573, 2022, 2042
Tth111I	GACNNNGTC	1 cut(s)	2153
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	8 cut(s)	125, 217, 322, 386, 499, 975, 1546, 2576
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	3 cut(s)	1219, 1796, 2029
XmiI	GTMKAC	3 cut(s)	1140, 1993, 2148
XmnI	GAANNNNTTC	1 cut(s)	1976
XspI	CTAG	6 cut(s)	225, 504, 723, 1323, 1455, 2564
ZraI	GACGTC	1 cut(s)	786
Zsp2I	ATGCAT	2 cut(s)	846, 2031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.