Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006556

Physical Location & Seq

Genomic Coordinates Forward (+)

13878478 .. 13879985

Gene Structure 1508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGACTCTCGTACCCAGTCGTCAACTTTACCCGACGAACTTGTTCGACTCGTTCCAGAGCTCCTTGTCGAAATTCAATGGCCCCCGCACCCAGTTCTTTAGGTACGGCCACGGCTCCTCAATTCCTTTCAACAGGCACACTTTCTATGCCACCCACTCCATTATCAGCTCTCCTGACCAAAGCCCAGTAAGGAAATCGAATTTTGTTGGGAGAAATCGATCCATTCATCAGTATATACCGAAGAGGAATTTGTGTACGAGTAGTTGGATTGATAAATGGAAAGAATCCCACGAGCGTAATCGCTTGAAACCGCCTCGGGCTGTGTTGGATTATCAAAGTAGTGAAAGTGGGAATTTGAGTGGTTCGGGAAATGGCGGTGGTAGTACAATGGAGAAGATTGTGGAGAAATTGAAGAAATTCGTGTACGTTGACGATAGTAATGAGGGTAAGGGGGAGGCGAGGGAGAGAGTGATTGAGAAGGGTTCTGTGGAGGATATATTTTATGTTGAGGAAGGAATGCTGCCAAATTCGCGAGGTGGGTTCTCGGCGGAATCACCATTGGGGATAGAGAATGTGTTTGGAAGTGATGGTAAGGTGAGGTTTCCGTGGGAAAAGCCGGCAGAGGAAGAGAAGCAAGAGGAGGGTTCGGTGAGGAGGAAGAGTAGGACTTCAGTGGCGGAATTGACTCTTCCGGAATCAGAGTTGAGGAGGCTGAGGAATTTGACATTTCAGAAGAAGCATAAGACTAAGATTGGAGGTGCGGGTGTTACTCAAGCCGTAGTGGACATGATCCACGAGAGATGGAAGACTTCAGAGATTGTGAGGCTGGAAGTTGAAGGTCCACCTGCTCTTAACATGAAGAGAATGCATGAGATATTGGAGCGAAAAACTGGTGGTTTGGTGGTCTGGAGGTCTGGTACATCTCTTTCTTTGTACAGAGGTGTGAGCTATGAGGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

321

Amino Acids

36.27

Weight (kDa)

9.6

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	230 - 313	9.7e-20	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23070
fragaria_vesca	FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120 FvH4_3g28120
malus_domestica	MD13G1206700.v1.1 MD16G1208000.v1.1
prunus_persica	Prupe.1G030300_v2.0.a1
pyrus_communis	pycom13g17910 pycom16g17530
rosa_chinensis	RchiOBHm_Chr5g0050811
rosa_laevigata	RLG00000034737 RLG00000034740
rosa_multiflora	Rmu_co8235889.1_g000001 Rmu_sc0004083.1_g000002 Rmu_sc0007394.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029900 Rroxscaffold_1G00029910
rosa_rugosa	Rorug05G0264200.1
rosa_samantha	Rh5AG336200 Rh5BG345800 Rh5CG373500 Rh5DG358800
rosa_wichuraiana	Rw5G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	853
Acc36I	ACCTGC	1 cut(s)	853
AccII	CGCG	1 cut(s)	532
AccIII	TCCGGA	1 cut(s)	691
AciI	CCGC	6 cut(s)	85, 311, 375, 548, 677, 761
AclWI	GGATC	2 cut(s)	213, 784
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	7 cut(s)	71, 199, 247, 352, 416, 526, 718
AcuI	CTGAAG	2 cut(s)	654, 795
AfaI	GTAC	7 cut(s)	12, 104, 256, 385, 425, 919, 935
AgsI	TTSAA	5 cut(s)	76, 130, 307, 412, 836
AluBI	AGCT	3 cut(s)	60, 168, 948
AluI	AGCT	3 cut(s)	60, 168, 948
Alw21I	GWGCWC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	213, 784
Ama87I	CYCGRG	1 cut(s)	315
Aor13HI	TCCGGA	1 cut(s)	691
AoxI	GGCC	2 cut(s)	79, 106
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	7 cut(s)	71, 199, 247, 352, 416, 526, 718
Asp700I	GAANNNNTTC	2 cut(s)	41, 416
AspS9I	GGNCC	2 cut(s)	80, 839
AsuHPI	GGTGA	3 cut(s)	546, 607, 661
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	839
BaeI	ACNNNNGTAYC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	62
BauI	CACGAG	2 cut(s)	290, 794
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	713
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	2 cut(s)	581, 795
BceAI	ACGGC	3 cut(s)	121, 127, 761
BfuAI	ACCTGC	1 cut(s)	853
BisI	GCNGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	839
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	80, 839
BmiI	GGNNCC	3 cut(s)	82, 115, 957
BmrI	ACTGGG	3 cut(s)	9, 85, 179
BmuI	ACTGGG	3 cut(s)	9, 85, 179
BpiI	GAAGAC	1 cut(s)	812
BpmI	CTGGAG	1 cut(s)	928
Bpu10I	CCTNAGC	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	756
Bsa29I	ATCGAT	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	109, 314, 605
BsaWI	WCCGGW	1 cut(s)	691
BsaXI	ACNNNNNCTCC	4 cut(s)	646, 676, 901, 931
Bse118I	RCCGGY	1 cut(s)	616
Bse1I	ACTGG	4 cut(s)	15, 91, 185, 895
BseAI	TCCGGA	1 cut(s)	691
BseCI	ATCGAT	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	109, 314, 605
BseMII	CTCAG	1 cut(s)	704
BseNI	ACTGG	4 cut(s)	15, 91, 185, 895
BseRI	GAGGAG	4 cut(s)	106, 653, 667, 721
BseXI	GCAGC	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	81, 108
BshVI	ATCGAT	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	617, 692
BsmI	GAATGC	2 cut(s)	522, 870
BsnI	GGCC	2 cut(s)	81, 108
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	691
Bsp1407I	TGTACA	1 cut(s)	933
Bsp143I	GATC	2 cut(s)	218, 789
Bsp68I	TCGCGA	1 cut(s)	532
BspACI	CCGC	6 cut(s)	85, 311, 375, 548, 677, 761
BspANI	GGCC	2 cut(s)	81, 108
BspCNI	CTCAG	1 cut(s)	705
BspDI	ATCGAT	1 cut(s)	217
BspEI	TCCGGA	1 cut(s)	691
BspFNI	CGCG	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	82, 115, 957
BspMI	ACCTGC	1 cut(s)	853
BspPI	GGATC	2 cut(s)	213, 784
BsrFI	RCCGGY	1 cut(s)	616
BsrGI	TGTACA	1 cut(s)	933
BsrI	ACTGG	4 cut(s)	15, 91, 185, 895
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	3 cut(s)	109, 314, 605
BssMI	GATC	2 cut(s)	218, 789
BssSI	CACGAG	2 cut(s)	290, 794
Bst2BI	CACGAG	2 cut(s)	290, 794
Bst6I	CTCTTC	5 cut(s)	236, 621, 653, 693, 854
BstAUI	TGTACA	1 cut(s)	933
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	2 cut(s)	713, 747
BstDSI	CCRYGG	2 cut(s)	109, 605
BstFNI	CGCG	1 cut(s)	532
BstKTI	GATC	2 cut(s)	221, 792
BstMBI	GATC	2 cut(s)	218, 789
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstUI	CGCG	1 cut(s)	532
BstV1I	GCAGC	1 cut(s)	507
BstV2I	GAAGAC	1 cut(s)	812
Bsu15I	ATCGAT	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	81, 108
BsuTUI	ATCGAT	1 cut(s)	217
BtgI	CCRYGG	2 cut(s)	109, 605
BtsIMutI	CAGTG	1 cut(s)	678
BtuMI	TCGCGA	1 cut(s)	532
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	1 cut(s)	618
Cfr10I	RCCGGY	1 cut(s)	616
Cfr13I	GGNCC	2 cut(s)	80, 839
ClaI	ATCGAT	1 cut(s)	217
Csp6I	GTAC	7 cut(s)	11, 103, 255, 384, 424, 918, 934
CviAII	CATG	3 cut(s)	787, 856, 869
CviQI	GTAC	7 cut(s)	11, 103, 255, 384, 424, 918, 934
DdeI	CTNAG	2 cut(s)	713, 747
DpnI	GATC	2 cut(s)	220, 791
DpnII	GATC	2 cut(s)	218, 789
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	5 cut(s)	236, 621, 653, 693, 854
EarI	CTCTTC	5 cut(s)	236, 621, 653, 693, 854
EciI	GGCGGA	2 cut(s)	563, 692
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	839
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	654, 795
Eco88I	CYCGRG	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	870
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	3 cut(s)	790, 859, 872
FatI	CATG	3 cut(s)	786, 855, 868
FauI	CCCGC	2 cut(s)	92, 754
Fnu4HI	GCNGC	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	521
GluI	GCNGC	1 cut(s)	521
GsuI	CTGGAG	1 cut(s)	928
HaeIII	GGCC	2 cut(s)	81, 108
HapII	CCGG	2 cut(s)	617, 692
Hin1II	CATG	3 cut(s)	790, 859, 872
HincII	GTYRAC	2 cut(s)	23, 430
HindII	GTYRAC	2 cut(s)	23, 430
HinfI	GANTC	6 cut(s)	4, 47, 284, 551, 685, 695
HpaII	CCGG	2 cut(s)	617, 692
HphI	GGTGA	3 cut(s)	546, 607, 661
Hpy166II	GTNNAC	6 cut(s)	23, 255, 424, 430, 784, 842
Hpy188I	TCNGA	3 cut(s)	700, 732, 814
Hpy188III	TCNNGA	6 cut(s)	55, 173, 366, 531, 692, 907
Hpy8I	GTNNAC	6 cut(s)	23, 255, 424, 430, 784, 842
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	472, 506, 830
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	868
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
HpyF3I	CTNAG	2 cut(s)	713, 747
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	790, 859, 872
Kpn2I	TCCGGA	1 cut(s)	691
KroI	GCCGGC	1 cut(s)	616
KroNI	GCCGGC	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	218, 789
LmnI	GCTCC	3 cut(s)	65, 119, 880
Lsp1109I	GCAGC	1 cut(s)	507
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	2 cut(s)	220, 791
MboI	GATC	2 cut(s)	218, 789
MboII	GAAGA	9 cut(s)	253, 406, 424, 638, 670, 680, 745, 817, 871
MhlI	GDGCHC	1 cut(s)	62
MlyI	GAGTC	2 cut(s)	41, 679
MmeI	TCCRAC	2 cut(s)	245, 306
Mph1103I	ATGCAT	1 cut(s)	870
MroI	TCCGGA	1 cut(s)	691
MroNI	GCCGGC	1 cut(s)	616
MroXI	GAANNNNTTC	2 cut(s)	41, 416
MseI	TTAA	2 cut(s)	852, 961
MspI	CCGG	2 cut(s)	617, 692
Mva1269I	GAATGC	2 cut(s)	522, 870
MvnI	CGCG	1 cut(s)	532
MwoI	GCNNNNNNNGC	1 cut(s)	529
NaeI	GCCGGC	1 cut(s)	618
NdeII	GATC	2 cut(s)	218, 789
NgoMIV	GCCGGC	1 cut(s)	616
NlaIII	CATG	3 cut(s)	790, 859, 872
NlaIV	GGNNCC	3 cut(s)	82, 115, 957
NmeAIII	GCCGAG	1 cut(s)	524
NruI	TCGCGA	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	870
PaqCI	CACCTGC	1 cut(s)	853
PctI	GAATGC	2 cut(s)	522, 870
PdiI	GCCGGC	1 cut(s)	618
PdmI	GAANNNNTTC	2 cut(s)	41, 416
PfeI	GAWTC	3 cut(s)	284, 551, 695
PkrI	GCNGC	1 cut(s)	522
PleI	GAGTC	2 cut(s)	41, 679
PpsI	GAGTC	2 cut(s)	41, 679
Psp124BI	GAGCTC	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	82, 115, 957
PspPI	GGNCC	2 cut(s)	80, 839
RruI	TCGCGA	1 cut(s)	532
RsaI	GTAC	7 cut(s)	12, 104, 256, 385, 425, 919, 935
RsaNI	GTAC	7 cut(s)	11, 103, 255, 384, 424, 918, 934
SacI	GAGCTC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	852, 961
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	2 cut(s)	218, 789
Sau96I	GGNCC	2 cut(s)	80, 839
SchI	GAGTC	2 cut(s)	41, 679
SduI	GDGCHC	1 cut(s)	62
SinI	GGWCC	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
SsiI	CCGC	6 cut(s)	85, 311, 375, 548, 677, 761
SstI	GAGCTC	1 cut(s)	62
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	4 cut(s)	45, 68, 197, 217
TatI	WGTACW	2 cut(s)	383, 933
TfiI	GAWTC	3 cut(s)	284, 551, 695
Tru1I	TTAA	2 cut(s)	852, 961
Tru9I	TTAA	2 cut(s)	852, 961
TscAI	CASTG	1 cut(s)	678
TseI	GCWGC	1 cut(s)	520
TspDTI	ATGAA	2 cut(s)	215, 872
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	1 cut(s)	678
VpaK11BI	GGWCC	1 cut(s)	839
XapI	RAATTY	7 cut(s)	71, 199, 247, 352, 416, 526, 718
XmnI	GAANNNNTTC	2 cut(s)	41, 416
Zsp2I	ATGCAT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.