MD16G1236900.v1.1

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0010151
Physical Location & Seq
Reverse (-)
24906187 .. 24907294
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1236900.v1.1.491

Sequence Viewer

Length: 471 bp
ATGAAGAGACGTGCACTTGTTAAAGGGAGGGGACCTGCGAGGATCACTACACAACAGGGGGTTTTCGAGTTAAAACACAAGGTGGTGATTGCAATGAACAAGCTTGCTGATCGGGATACTTACCAATTAGGCGTCGAGGAACTTGAGCAAATGGCTGAGTGCTTGACCCCAGATGGGTTTGCTCCGTTTCTGTCTTGTATTTTGGATATGGATTCAGAACAAAAGAGTGCAGTCCGAAAGGAGTGTATTAGACTAATTGGTATATTAATGGTTGCCAGCATTGTTAAGCGGCTCAGGGATCCAGATTCCGTTGTGAGAGATGCATGCGTGGAGACTGTTGGTGTTTTAGCATCAAAACTCAGTAATGATGTGGGTGAGGGTGATGGGGTCTTTGTTGTTTTAGTCAGGCACTTTTTGAAGCTCTGTGTGAACAAAACAGGCAGGTGCAGTCGGGTTCAGCATTGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cohesin_HEAT HEAT

Protein Analysis

157

Amino Acids

17.26

Weight (kDa)

8.9

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 22 - 140 6e-40 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 432
Acc36I ACCTGC 2 cut(s) 43, 432
AciI CCGC 1 cut(s) 289
AclWI GGATC 3 cut(s) 50, 293, 306
AcyI GRCGYC 1 cut(s) 132
AdeI CACNNNGTG 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 1 cut(s) 418
AjiI CACGTC 1 cut(s) 11
AluBI AGCT 2 cut(s) 103, 421
AluI AGCT 2 cut(s) 103, 421
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 326
Alw44I GTGCAC 1 cut(s) 12
AlwI GGATC 3 cut(s) 50, 293, 306
ApaLI GTGCAC 1 cut(s) 12
AseI ATTAAT 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 97, 386, 392
AvaII GGWCC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 16
BamHI GGATCC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 16
BccI CCATC 2 cut(s) 167, 377
BciVI GTATCC 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 326
BfuAI ACCTGC 2 cut(s) 43, 432
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 32
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 33, 300
BmsI GCATC 2 cut(s) 310, 359
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 3 cut(s) 147, 307, 373
BseSI GKGCMC 1 cut(s) 16
BsgI GTGCAG 2 cut(s) 249, 466
BsiHKAI GWGCWC 1 cut(s) 16
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 3 cut(s) 42, 109, 298
BspACI CCGC 1 cut(s) 289
BspCNI CTCAG 3 cut(s) 148, 306, 372
BspLI GGNNCC 2 cut(s) 33, 300
BspMI ACCTGC 2 cut(s) 43, 432
BspPI GGATC 3 cut(s) 50, 293, 306
BsrDI GCAATG 1 cut(s) 99
BssMI GATC 3 cut(s) 42, 109, 298
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 337
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 105, 277, 325
BstDEI CTNAG 4 cut(s) 156, 293, 359, 468
BstKTI GATC 3 cut(s) 45, 112, 301
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 3 cut(s) 42, 109, 298
BstNSI RCATGY 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuI GTATCC 1 cut(s) 109
BtrI CACGTC 1 cut(s) 11
BveI ACCTGC 2 cut(s) 43, 432
Cac8I GCNNGC 3 cut(s) 105, 277, 325
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 121
CviAII CATG 1 cut(s) 324
CviJI RGCY 4 cut(s) 103, 155, 292, 421
CviKI_1 RGCY 4 cut(s) 103, 155, 292, 421
DdeI CTNAG 4 cut(s) 156, 293, 359, 468
DpnI GATC 3 cut(s) 44, 111, 300
DpnII GATC 3 cut(s) 42, 109, 298
DraIII CACNNNGTG 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 325
FaeI CATG 1 cut(s) 327
FaiI YATR 3 cut(s) 209, 263, 325
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 290
HgaI GACGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 212, 305
HphI GGTGA 3 cut(s) 97, 386, 392
Hpy166II GTNNAC 2 cut(s) 14, 430
Hpy188I TCNGA 2 cut(s) 217, 236
Hpy188III TCNNGA 2 cut(s) 113, 302
Hpy8I GTNNAC 2 cut(s) 14, 430
Hpy99I CGWCG 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 14, 92, 230, 323, 447
HpyF3I CTNAG 4 cut(s) 156, 293, 359, 468
HpySE526I ACGT 1 cut(s) 10
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 327
Kzo9I GATC 3 cut(s) 42, 109, 298
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 9 cut(s) 41, 48, 183, 280, 289, 315, 391, 423, 427
LweI GCATC 2 cut(s) 310, 359
MaeII ACGT 1 cut(s) 10
MalI GATC 3 cut(s) 44, 111, 300
MboI GATC 3 cut(s) 42, 109, 298
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 125, 255
MnlI CCTC 4 cut(s) 21, 33, 130, 370
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 4 cut(s) 21, 71, 266, 285
NdeII GATC 3 cut(s) 42, 109, 298
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 2 cut(s) 33, 300
NsiI ATGCAT 1 cut(s) 325
NspI RCATGY 1 cut(s) 327
PaeI GCATGC 1 cut(s) 327
PaqCI CACCTGC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 212, 305
PkrI GCNGC 1 cut(s) 291
PpuMI RGGWCCY 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 33, 300
PspPI GGNCC 1 cut(s) 32
PspPPI RGGWCCY 1 cut(s) 32
PsuI RGATCY 1 cut(s) 298
SaqAI TTAA 4 cut(s) 21, 71, 266, 285
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 3 cut(s) 42, 109, 298
Sau96I GGNCC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 16
SetI ASST 6 cut(s) 13, 37, 84, 105, 423, 446
SfaNI GCATC 2 cut(s) 310, 359
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 1 cut(s) 327
Sse9I AATT 2 cut(s) 125, 255
SsiI CCGC 1 cut(s) 289
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 66, 135
TasI AATT 2 cut(s) 125, 255
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 2 cut(s) 212, 305
Tru1I TTAA 4 cut(s) 21, 71, 266, 285
Tru9I TTAA 4 cut(s) 21, 71, 266, 285
TspDTI ATGAA 2 cut(s) 17, 110
TspGWI ACGGA 2 cut(s) 174, 298
VneI GTGCAC 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 32
VspI ATTAAT 1 cut(s) 266
XceI RCATGY 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.