RLG00000018833

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010151
Physical Location & Seq
Forward (+)
37446811 .. 37450653
3843 bp
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UTR
Exon/CDS
Intron
RLM00000018833

Sequence Viewer

Length: 414 bp
ATGAAGACGCATGCTATGGGGAGAGGAAATGGGAGACTCACTGTGAAACAGGTGGTTTTCAAGCTCAAGCAAAAGGTGGTTGTTGATCAGGATACTTACCCAATAGGTGTCGAGGAGCTTGAGAAAATTGAGGAGTGCTTGAACCCAGATGGGATTGCTCCATTTCTATCGTGTATTTTGGAAACAGATTTGGAACAAAAGAGCGCTGTTCGAAAGGAATGTATTAGGTTCATGGGTACATTGGTGAGCCAGGCCAGAGTCCACGTGATCAGTTTAGCCGCCGGCGAGTCCTATTTCGACACTCCTTCAGTTGTGGAGCTTGAGAAAATGGCGGAAGAACAAGACGAAGCTCCCATACTTCGCTCTGATTCCACCACGCTGAAGCTTCCTGATCATCTGGGCAAGTTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cohesin_HEAT HEAT

Protein Analysis

138

Amino Acids

15.29

Weight (kDa)

5.24

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 20 - 84 2.7e-18 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 279, 332
AcuI CTGAAG 2 cut(s) 291, 401
AcvI CACGTG 1 cut(s) 265
AfaI GTAC 1 cut(s) 238
AfeI AGCGCT 1 cut(s) 205
AgsI TTSAA 2 cut(s) 61, 142
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 5 cut(s) 64, 118, 319, 350, 385
AluI AGCT 5 cut(s) 64, 118, 319, 350, 385
Alw26I GTCTC 1 cut(s) 28
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 211
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BarI GAAGNNNNNNTAC 2 cut(s) 339, 371
BbrPI CACGTG 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 251
BciVI GTATCC 1 cut(s) 85
BclI TGATCA 3 cut(s) 85, 267, 391
BcoDI GTCTC 1 cut(s) 28
BfmI CTRYAG 1 cut(s) 410
BfoI RGCGCY 1 cut(s) 207
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 211
BpuEI CTTGAG 3 cut(s) 50, 140, 341
BsaAI YACGTR 1 cut(s) 265
Bse118I RCCGGY 1 cut(s) 281
BseBI CCWGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 128, 146
BshFI GGCC 1 cut(s) 254
BsiSI CCGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 1 cut(s) 254
Bsp119I TTCGAA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 85, 267, 391
BspACI CCGC 2 cut(s) 279, 332
BspANI GGCC 1 cut(s) 254
BspT104I TTCGAA 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 3 cut(s) 85, 267, 391
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 43
BstBAI YACGTR 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 12, 283
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 3 cut(s) 88, 270, 394
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 3 cut(s) 85, 267, 391
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 410
BstV2I GAAGAC 1 cut(s) 11
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 12, 283
CfoI GCGC 1 cut(s) 206
Cfr10I RCCGGY 1 cut(s) 281
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 11, 232
CviJI RGCY 8 cut(s) 64, 118, 249, 254, 278, 319, 350, 385
CviKI_1 RGCY 8 cut(s) 64, 118, 249, 254, 278, 319, 350, 385
CviQI GTAC 1 cut(s) 237
DpnI GATC 3 cut(s) 87, 269, 393
DpnII GATC 3 cut(s) 85, 267, 391
EciI GGCGGA 1 cut(s) 347
Eco47III AGCGCT 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 291, 401
Eco72I CACGTG 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 249
FaeI CATG 2 cut(s) 14, 235
FaiI YATR 4 cut(s) 12, 17, 233, 356
FatI CATG 2 cut(s) 10, 231
FbaI TGATCA 3 cut(s) 85, 267, 391
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 282
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 14, 235
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 4 cut(s) 36, 258, 287, 368
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 2 cut(s) 89, 389
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 14, 235
HspAI GCGC 1 cut(s) 204
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Ksp22I TGATCA 3 cut(s) 85, 267, 391
Kzo9I GATC 3 cut(s) 85, 267, 391
LmnI GCTCC 4 cut(s) 115, 163, 316, 355
LpnPI CCDG 9 cut(s) 35, 74, 159, 236, 263, 268, 295, 383, 402
MaeII ACGT 1 cut(s) 264
MalI GATC 3 cut(s) 87, 269, 393
MboI GATC 3 cut(s) 85, 267, 391
MboII GAAGA 2 cut(s) 16, 347
MluCI AATT 1 cut(s) 126
MlyI GAGTC 3 cut(s) 30, 267, 296
MnlI CCTC 3 cut(s) 17, 106, 124
MreI CGCCGGCG 1 cut(s) 281
MroNI GCCGGC 1 cut(s) 281
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
NaeI GCCGGC 1 cut(s) 283
NdeII GATC 3 cut(s) 85, 267, 391
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 2 cut(s) 14, 235
NspI RCATGY 1 cut(s) 14
NspV TTCGAA 1 cut(s) 211
PaeI GCATGC 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 3 cut(s) 30, 266, 295
PmaCI CACGTG 1 cut(s) 265
PmlI CACGTG 1 cut(s) 265
PpsI GAGTC 3 cut(s) 30, 266, 295
Ppu21I YACGTR 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 249
PspCI CACGTG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 249
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 85, 267, 391
SchI GAGTC 3 cut(s) 30, 267, 296
ScrFI CCNGG 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 410
SfuI TTCGAA 1 cut(s) 211
SgrAI CRCCGGYG 1 cut(s) 281
SmlI CTYRAG 3 cut(s) 65, 119, 320
SmoI CTYRAG 3 cut(s) 65, 119, 320
SphI GCATGC 1 cut(s) 14
Sse9I AATT 1 cut(s) 126
SsiI CCGC 2 cut(s) 279, 332
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 111, 211, 297
TasI AATT 1 cut(s) 126
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 368
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 17, 220
TspRI CASTG 1 cut(s) 46
XceI RCATGY 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.