RLG00000018834

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010151
Physical Location & Seq
Forward (+)
37450918 .. 37453818
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018834

Sequence Viewer

Length: 627 bp
ATGATCAAGATGAAGACGCATGCTATAGGGAGAGGAAATGGGAGACTCACTGTGAAACAGGTGGTTTTCGAGCTCAAGCAAAAGGTGGTTGTTGATCAGGGTACTTACCAAATAGGTGTCGAGGAGCTTGAGAAAATTGAGGAGTGCTTGAACCCAGATGGGATTGCTCCATTTCTGTCGTGTATTTTGGAAACAGATTTGGAACAAAAGAGTGCTGTTCAAAAGGAATGCATTAGGTTGATGGGTACATTGGTGAGGTATCATGAGGGGCATGTCGGAATGCATCTTGGTGATTGTTGCACACCTCACCAAATCAGCTGCCAGACTTCGAGCCCCTACCCGCTATACAGTACCTCTACTGAGTCATCGAATCTAGTTGGATGCAAATACATAGCAAGGAGTCACCGAGGCAAGTTAAGCCCTAGCTCCAATTGTTTCTTCTTCAAAATGGCCAAGACGACAGAGACACAAGATAACCAACCTCCACCAGGATACCCAACTGCAACCAATGATCCCCCAACTAGGAAGAAGTTTCGGTCACGGAATAAAAAGAAAGGAGATAGGGGCTTCATTGAGGGCTGCCTATTTGCCTTGTGCTGCTGTTGGCTTTGCGAGGAATGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cohesin_HEAT HEAT

Protein Analysis

209

Amino Acids

23.34

Weight (kDa)

8.5

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 25 - 97 1.2e-19 TORTIFOLIA1 N-terminal
CYSTM PF12734 163 - 208 6.6e-14 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 341
AclWI GGATC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 450
AfaI GTAC 3 cut(s) 103, 247, 352
AfiI CCNNNNNNNGG 2 cut(s) 488, 522
AgsI TTSAA 3 cut(s) 151, 221, 445
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 4 cut(s) 73, 127, 318, 426
AluI AGCT 4 cut(s) 73, 127, 318, 426
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 2 cut(s) 37, 458
AlwI GGATC 1 cut(s) 506
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 3 cut(s) 318, 579, 597
AsuHPI GGTGA 4 cut(s) 265, 299, 302, 395
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BalI TGGCCA 1 cut(s) 452
BanII GRGCYC 2 cut(s) 75, 335
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 3 cut(s) 305, 566, 584
BccI CCATC 2 cut(s) 152, 235
BciT130I CCWGG 1 cut(s) 489
BciVI GTATCC 1 cut(s) 485
BclI TGATCA 2 cut(s) 3, 94
BcoDI GTCTC 2 cut(s) 37, 458
BfaI CTAG 3 cut(s) 374, 423, 522
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 485
BisI GCNGC 3 cut(s) 319, 580, 598
BlsI GCNGC 3 cut(s) 320, 581, 599
Bme1390I CCNGG 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 292, 371
BpiI GAAGAC 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 59, 149
BsaJI CCNNGG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 522
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 2 cut(s) 488, 522
BseMII CTCAG 1 cut(s) 351
BseRI GAGGAG 2 cut(s) 137, 155
BseXI GCAGC 3 cut(s) 305, 566, 584
BshFI GGCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 488, 522
BsmAI GTCTC 2 cut(s) 37, 458
BsmI GAATGC 3 cut(s) 233, 285, 623
BsnI GGCC 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 75, 335
Bsp143I GATC 3 cut(s) 3, 94, 511
BspACI CCGC 1 cut(s) 341
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 352
BspHI TCATGA 1 cut(s) 262
BspPI GGATC 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 3 cut(s) 3, 94, 511
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 52, 350
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 360
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 386
BstKTI GATC 3 cut(s) 6, 97, 514
BstMAI GTCTC 2 cut(s) 37, 458
BstMBI GATC 3 cut(s) 3, 94, 511
BstMWI GCNNNNNNNGC 2 cut(s) 417, 618
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 2 cut(s) 23, 275
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 305, 566, 584
BstV2I GAAGAC 1 cut(s) 20
BsuI GTATCC 1 cut(s) 485
BsuRI GGCC 1 cut(s) 452
BtsCI GGATG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 262
CseI GACGC 1 cut(s) 25
Csp6I GTAC 3 cut(s) 102, 246, 351
CviAII CATG 3 cut(s) 20, 263, 272
CviQI GTAC 3 cut(s) 102, 246, 351
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 5, 96, 513
DpnII GATC 3 cut(s) 3, 94, 511
EaeI YGGCCR 1 cut(s) 450
Ecl136II GAGCTC 1 cut(s) 73
Eco24I GRGCYC 2 cut(s) 75, 335
Eco53kI GAGCTC 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 487
EcoT22I ATGCAT 2 cut(s) 233, 285
EcoT38I GRGCYC 2 cut(s) 75, 335
FaeI CATG 3 cut(s) 23, 266, 275
FaiI YATR 6 cut(s) 21, 26, 264, 273, 346, 392
FatI CATG 3 cut(s) 19, 262, 271
FauI CCCGC 1 cut(s) 348
FbaI TGATCA 2 cut(s) 3, 94
Fnu4HI GCNGC 3 cut(s) 319, 580, 598
FokI GGATG 1 cut(s) 393
FriOI GRGCYC 2 cut(s) 75, 335
Fsp4HI GCNGC 3 cut(s) 319, 580, 598
FspBI CTAG 3 cut(s) 374, 423, 522
GluI GCNGC 3 cut(s) 319, 580, 598
HaeIII GGCC 1 cut(s) 452
HgaI GACGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 23, 266, 275
HinfI GANTC 4 cut(s) 45, 362, 370, 400
HphI GGTGA 4 cut(s) 265, 299, 302, 395
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 2 cut(s) 7, 263
HpyCH4III ACNGT 2 cut(s) 52, 350
HpyCH4V TGCA 5 cut(s) 231, 283, 300, 384, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 417, 618
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 3 cut(s) 23, 266, 275
Ksp22I TGATCA 2 cut(s) 3, 94
Kzo9I GATC 3 cut(s) 3, 94, 511
LmnI GCTCC 3 cut(s) 124, 172, 431
LpnPI CCDG 6 cut(s) 44, 83, 168, 335, 474, 501
Lsp1109I GCAGC 3 cut(s) 305, 566, 584
LweI GCATC 2 cut(s) 292, 371
MaeI CTAG 3 cut(s) 374, 423, 522
MaeIII GTNAC 2 cut(s) 401, 537
MalI GATC 3 cut(s) 5, 96, 513
MboI GATC 3 cut(s) 3, 94, 511
MboII GAAGA 4 cut(s) 25, 430, 433, 538
MfeI CAATTG 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 75, 335
MlsI TGGCCA 1 cut(s) 452
MluCI AATT 2 cut(s) 135, 430
MluNI TGGCCA 1 cut(s) 452
MlyI GAGTC 3 cut(s) 39, 371, 409
MmeI TCCRAC 2 cut(s) 256, 358
Mox20I TGGCCA 1 cut(s) 452
Mph1103I ATGCAT 2 cut(s) 233, 285
MscI TGGCCA 1 cut(s) 452
MseI TTAA 1 cut(s) 416
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 489
MunI CAATTG 1 cut(s) 430
Mva1269I GAATGC 3 cut(s) 233, 285, 623
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 2 cut(s) 417, 618
NdeII GATC 3 cut(s) 3, 94, 511
NlaIII CATG 3 cut(s) 23, 266, 275
NmuCI GTSAC 2 cut(s) 401, 537
NsiI ATGCAT 2 cut(s) 233, 285
NspI RCATGY 2 cut(s) 23, 275
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 262
PctI GAATGC 3 cut(s) 233, 285, 623
PfeI GAWTC 1 cut(s) 370
PkrI GCNGC 3 cut(s) 320, 581, 599
PleI GAGTC 3 cut(s) 39, 370, 408
PpsI GAGTC 3 cut(s) 39, 370, 408
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 318
RsaI GTAC 3 cut(s) 103, 247, 352
RsaNI GTAC 3 cut(s) 102, 246, 351
RseI CAYNNNNRTG 1 cut(s) 288
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 3 cut(s) 319, 580, 598
Sau3AI GATC 3 cut(s) 3, 94, 511
SchI GAGTC 3 cut(s) 39, 371, 409
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 2 cut(s) 75, 335
SfaNI GCATC 2 cut(s) 292, 371
SfcI CTRYAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 74, 128
SmoI CTYRAG 2 cut(s) 74, 128
SphI GCATGC 1 cut(s) 23
Sse9I AATT 2 cut(s) 135, 430
SsiI CCGC 1 cut(s) 341
SspMI CTAG 3 cut(s) 374, 423, 522
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 487
TaaI ACNGT 2 cut(s) 52, 350
TaqI TCGA 4 cut(s) 69, 120, 329, 368
TaqII GACCGA 1 cut(s) 525
TasI AATT 2 cut(s) 135, 430
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 401, 537
TseI GCWGC 3 cut(s) 318, 579, 597
Tsp45I GTSAC 2 cut(s) 401, 537
TspDTI ATGAA 2 cut(s) 26, 559
TspGWI ACGGA 1 cut(s) 556
TspRI CASTG 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 486
XceI RCATGY 2 cut(s) 23, 275
XspI CTAG 3 cut(s) 374, 423, 522
Zsp2I ATGCAT 2 cut(s) 233, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.