Rroxscaffold_3G00240510

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010151
Physical Location & Seq
Forward (+)
32279987 .. 32280511
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240510.1

Sequence Viewer

Length: 387 bp
ATGGCGGAAGAACAGACGAAGCTCCCATACTTCGCTCTGCTTCCACCACGCGAAGCTTCCCGTTCATCCGGGCAAGTTTCTATAGAGTTAGAGAAAGAAAGAAGTGGGGTTCTTGATTGTGGAGGGAATAGGTGGAATTTGGGGCTATTGAGTAAGGATTCGATGATCAAGATGAAGACGCATGCTAAGGGGAGAGGAAATGGGAGACTCACCGTGCAACAGGTGGTTTTCGAGCTCAAACAAAAGGTGGTTGTTGATTGGGATACTTCCCAAATAGGTGTCGAGGAGCTTGAGAAAAGTGCGGAGTGCTTTAACCCATCCATTTCTGTCATGTATTTTAGATACAGATTTGGAACAAAAGAGTGCTGTTCGAAAGGAATGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cohesin_HEAT HEAT

Protein Analysis

128

Amino Acids

14.46

Weight (kDa)

8.7

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AciI CCGC 2 cut(s) 5, 302
AcsI RAATTY 1 cut(s) 136
AluBI AGCT 4 cut(s) 22, 56, 235, 289
AluI AGCT 4 cut(s) 22, 56, 235, 289
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 202
AsuII TTCGAA 1 cut(s) 371
BanII GRGCYC 1 cut(s) 237
BarI GAAGNNNNNNTAC 2 cut(s) 11, 43
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 1 cut(s) 325
BcgI CGANNNNNNTGC 1 cut(s) 361
BciVI GTATCC 1 cut(s) 256
BclI TGATCA 1 cut(s) 165
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 199
BfmI CTRYAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 65, 317
BseRI GAGGAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 2 cut(s) 5, 302
BspFNI CGCG 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 371
BssMI GATC 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 65, 317
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 182
BsuI GTATCC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 65, 317
Cac8I GCNNGC 1 cut(s) 183
CseI GACGC 1 cut(s) 187
CviAII CATG 2 cut(s) 182, 331
CviJI RGCY 5 cut(s) 22, 56, 145, 235, 289
CviKI_1 RGCY 5 cut(s) 22, 56, 145, 235, 289
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 2 cut(s) 185, 334
FaiI YATR 4 cut(s) 28, 83, 183, 332
FatI CATG 2 cut(s) 181, 330
FbaI TGATCA 1 cut(s) 165
FokI GGATG 2 cut(s) 52, 304
FriOI GRGCYC 1 cut(s) 237
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 187
Hin1II CATG 2 cut(s) 185, 334
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 2 cut(s) 158, 207
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 113, 169
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 217, 382
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 2 cut(s) 185, 334
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 27, 286
LpnPI CCDG 2 cut(s) 82, 206
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 2 cut(s) 20, 187
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 136
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 3 cut(s) 116, 188, 277
Mph1103I ATGCAT 1 cut(s) 384
MseI TTAA 1 cut(s) 312
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 70
Mva1269I GAATGC 1 cut(s) 384
MvnI CGCG 1 cut(s) 51
NciI CCSGG 1 cut(s) 70
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 185, 334
NsiI ATGCAT 1 cut(s) 384
NspI RCATGY 1 cut(s) 185
NspV TTCGAA 1 cut(s) 371
PaeI GCATGC 1 cut(s) 185
PctI GAATGC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 158
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 237
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 312
Sau3AI GATC 1 cut(s) 165
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 237
SetI ASST 8 cut(s) 24, 58, 134, 225, 237, 249, 280, 291
SfcI CTRYAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 185
Sse9I AATT 1 cut(s) 136
SsiI CCGC 2 cut(s) 5, 302
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 4 cut(s) 161, 231, 282, 371
TasI AATT 1 cut(s) 136
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TspDTI ATGAA 2 cut(s) 54, 188
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.