Cysteine-rich TM module stress tolerance
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04080 AT5G04080 AT5G04080 |
| fragaria_vesca | FvH4_6g25100 |
| malus_domestica | MD00G1073900.v1.1 MD12G1091200.v1.1 MD16G1236900.v1.1 |
| prunus_persica | Prupe.7G046400_v2.0.a1 Prupe.7G046400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0124931 |
| rosa_laevigata | RLG00000018833 RLG00000018834 |
| rosa_roxburghii | Rroxscaffold_2G00118580 Rroxscaffold_2G00118870 Rroxscaffold_3G00240510 |
| rosa_rugosa | Rorug02G0253500 |
| rosa_samantha | Rh4DG071000 Rh7CG159700 Rh7CG479700 |
| rosa_wichuraiana | Rw0G012870 Rw2G025270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 148 |
| AciI | CCGC | 1 cut(s) | 132 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcyI | GRCGYC | 1 cut(s) | 169 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 38, 71, 72 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 209 |
| Alw26I | GTCTC | 3 cut(s) | 102, 130, 217 |
| AoxI | GGCC | 3 cut(s) | 3, 86, 231 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 1 cut(s) | 152 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BceAI | ACGGC | 1 cut(s) | 182 |
| BciVI | GTATCC | 1 cut(s) | 35 |
| BcoDI | GTCTC | 3 cut(s) | 102, 130, 217 |
| BfaI | CTAG | 1 cut(s) | 173 |
| BfuAI | ACCTGC | 1 cut(s) | 148 |
| BfuI | GTATCC | 1 cut(s) | 35 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmrI | ACTGGG | 2 cut(s) | 81, 172 |
| BmsI | GCATC | 2 cut(s) | 62, 119 |
| BmuI | ACTGGG | 2 cut(s) | 81, 172 |
| BpmI | CTGGAG | 1 cut(s) | 18 |
| BpuEI | CTTGAG | 1 cut(s) | 199 |
| BsaHI | GRCGYC | 1 cut(s) | 169 |
| BsaI | GGTCTC | 2 cut(s) | 130, 217 |
| BsaJI | CCNNGG | 1 cut(s) | 89 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 38, 71, 72 |
| Bse1I | ACTGG | 2 cut(s) | 76, 178 |
| BseDI | CCNNGG | 1 cut(s) | 89 |
| BseGI | GGATG | 1 cut(s) | 134 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 38, 71, 72 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BseNI | ACTGG | 2 cut(s) | 76, 178 |
| BshFI | GGCC | 3 cut(s) | 5, 88, 233 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 38, 71, 72 |
| BsmAI | GTCTC | 3 cut(s) | 102, 130, 217 |
| BsnI | GGCC | 3 cut(s) | 5, 88, 233 |
| Bso31I | GGTCTC | 2 cut(s) | 130, 217 |
| BspACI | CCGC | 1 cut(s) | 132 |
| BspANI | GGCC | 3 cut(s) | 5, 88, 233 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspMI | ACCTGC | 1 cut(s) | 148 |
| BspTNI | GGTCTC | 2 cut(s) | 130, 217 |
| BsrI | ACTGG | 2 cut(s) | 76, 178 |
| BssECI | CCNNGG | 1 cut(s) | 89 |
| BssNI | GRCGYC | 1 cut(s) | 169 |
| BstACI | GRCGYC | 1 cut(s) | 169 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 36 |
| BstF5I | GGATG | 1 cut(s) | 134 |
| BstMAI | GTCTC | 3 cut(s) | 102, 130, 217 |
| BsuI | GTATCC | 1 cut(s) | 35 |
| BsuRI | GGCC | 3 cut(s) | 5, 88, 233 |
| BtsCI | GGATG | 1 cut(s) | 134 |
| BtsIMutI | CAGTG | 1 cut(s) | 185 |
| BveI | ACCTGC | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| CseI | GACGC | 1 cut(s) | 158 |
| CviAII | CATG | 1 cut(s) | 229 |
| CviJI | RGCY | 6 cut(s) | 5, 88, 117, 176, 191, 233 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 88, 117, 176, 191, 233 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DriI | GACNNNNNGTC | 1 cut(s) | 209 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 209 |
| Eco147I | AGGCCT | 1 cut(s) | 88 |
| Eco31I | GGTCTC | 2 cut(s) | 130, 217 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 36 |
| FaeI | CATG | 1 cut(s) | 232 |
| FaiI | YATR | 2 cut(s) | 155, 230 |
| FatI | CATG | 1 cut(s) | 228 |
| FauI | CCCGC | 1 cut(s) | 125 |
| FokI | GGATG | 1 cut(s) | 141 |
| FspBI | CTAG | 1 cut(s) | 173 |
| GsuI | CTGGAG | 1 cut(s) | 18 |
| HaeIII | GGCC | 3 cut(s) | 5, 88, 233 |
| HgaI | GACGC | 1 cut(s) | 158 |
| Hin1I | GRCGYC | 1 cut(s) | 169 |
| Hin1II | CATG | 1 cut(s) | 232 |
| HinfI | GANTC | 1 cut(s) | 61 |
| HphI | GGTGA | 1 cut(s) | 152 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 93 |
| HpyCH4V | TGCA | 3 cut(s) | 53, 143, 201 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| Hsp92I | GRCGYC | 1 cut(s) | 169 |
| Hsp92II | CATG | 1 cut(s) | 232 |
| LpnPI | CCDG | 6 cut(s) | 24, 48, 57, 97, 153, 191 |
| LweI | GCATC | 2 cut(s) | 62, 119 |
| MaeI | CTAG | 1 cut(s) | 173 |
| MaeIII | GTNAC | 1 cut(s) | 158 |
| MboII | GAAGA | 1 cut(s) | 88 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 3 cut(s) | 42, 99, 118 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| NlaIII | CATG | 1 cut(s) | 232 |
| NmuCI | GTSAC | 1 cut(s) | 158 |
| PceI | AGGCCT | 1 cut(s) | 88 |
| PfeI | GAWTC | 1 cut(s) | 61 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| SetI | ASST | 2 cut(s) | 34, 142 |
| SfaNI | GCATC | 2 cut(s) | 62, 119 |
| SmlI | CTYRAG | 1 cut(s) | 214 |
| SmoI | CTYRAG | 1 cut(s) | 214 |
| SseBI | AGGCCT | 1 cut(s) | 88 |
| SsiI | CCGC | 1 cut(s) | 132 |
| SspMI | CTAG | 1 cut(s) | 173 |
| StuI | AGGCCT | 1 cut(s) | 88 |
| TfiI | GAWTC | 1 cut(s) | 61 |
| TscAI | CASTG | 1 cut(s) | 185 |
| TseFI | GTSAC | 1 cut(s) | 158 |
| Tsp45I | GTSAC | 1 cut(s) | 158 |
| TspRI | CASTG | 1 cut(s) | 185 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 36 |
| XspI | CTAG | 1 cut(s) | 173 |