Rroxscaffold_2G00118870

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010151
Physical Location & Seq
Reverse (-)
50739573 .. 50740729
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118870.1

Sequence Viewer

Length: 180 bp
ATGGCCAAGACGACAGAGACACAAGATAACCAACCTCCACCAGGATACCCAACTGCAACCAATGATCCCCCAACTAGGAAGAAGTTCCGGTCACGGACTAAAAAGAAAGGAGATAGGGGCTTCATTGAGGGCTGCCTATTTGCCTTGTGCTGCTGTTGGCTTTGTGAGGAATGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

59

Amino Acids

6.72

Weight (kDa)

8.61

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 14 - 59 2.5e-15 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 41, 75
AjnI CCWGG 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 132, 150
Asp700I GAANNNNTTC 1 cut(s) 83
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 119, 137
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 75
BfuI GTATCC 1 cut(s) 38
BisI GCNGC 2 cut(s) 133, 151
BlsI GCNGC 2 cut(s) 134, 152
Bme1390I CCNGG 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 75
BseBI CCWGG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 41, 75
BseXI GCAGC 2 cut(s) 119, 137
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 41, 75
BsmAI GTCTC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 59
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 39
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 119, 137
BsuI GTATCC 1 cut(s) 38
BsuRI GGCC 1 cut(s) 5
CviJI RGCY 4 cut(s) 5, 120, 132, 160
CviKI_1 RGCY 4 cut(s) 5, 120, 132, 160
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 3
EcoNI CCTNNNNNAGG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 133, 151
Fsp4HI GCNGC 2 cut(s) 133, 151
FspBI CTAG 1 cut(s) 75
GluI GCNGC 2 cut(s) 133, 151
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 88
HpaII CCGG 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 56
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 3 cut(s) 27, 54, 101
Lsp1109I GCAGC 2 cut(s) 119, 137
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 90
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 45, 121, 160
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 1 cut(s) 42
NdeII GATC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 90
PctI GAATGC 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 134, 152
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
SatI GCNGC 2 cut(s) 133, 151
Sau3AI GATC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 42
SetI ASST 1 cut(s) 37
SgeI CNNG 8 cut(s) 19, 35, 53, 54, 87, 100, 105, 157
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 2 cut(s) 132, 150
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 109
XagI CCTNNNNNAGG 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.