Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010151

Physical Location & Seq

Genomic Coordinates Reverse (-)

13081577 .. 13089448

Gene Structure 7872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG159700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATCAAGATGAAGACGCATGCTGAAGGGAGAGGAAATGGGAGACTCACTGTGCAACAGGTGGTTTTCGAGCTCAAGCAAAAGGTGGTTGTTGATTGGGATACTTCCCAAATAGGTGTCGAGGAGCTTGAGAAAATTGCGGAGTGCTTGAACCCATCCATTTCTGTCGTAGATATTCTCCGTACCTATGCCCATGATGATGTCAGTGTCAGATCTTGGTTTATTGGGCTTGATGTTAAACATCTGAATGACGCCAAGTTTTGCTGCTCCTCTTGGACAGGAGGAGCCATTTGTGCTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

101

Amino Acids

11.19

Weight (kDa)

5.85

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04080 AT5G04080 AT5G04080
fragaria_vesca	FvH4_6g25100
malus_domestica	MD00G1073900.v1.1 MD12G1091200.v1.1 MD16G1236900.v1.1
prunus_persica	Prupe.7G046400_v2.0.a1 Prupe.7G046400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124931
rosa_laevigata	RLG00000018833 RLG00000018834
rosa_roxburghii	Rroxscaffold_2G00118580 Rroxscaffold_2G00118870 Rroxscaffold_3G00240510
rosa_rugosa	Rorug02G0253500
rosa_samantha	Rh4DG071000 Rh7CG159700 Rh7CG479700
rosa_wichuraiana	Rw0G012870 Rw2G025270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	2 cut(s)	73, 127
AluI	AGCT	2 cut(s)	73, 127
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	20
BpuEI	CTTGAG	2 cut(s)	59, 149
BsaHI	GRCGYC	1 cut(s)	252
BseGI	GGATG	1 cut(s)	155
BseRI	GAGGAG	3 cut(s)	137, 259, 297
BseXI	GCAGC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	3, 212
BspACI	CCGC	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	286
BssMI	GATC	2 cut(s)	3, 212
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	6, 215
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	3, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	48, 211
Cac8I	GCNNGC	1 cut(s)	21
CseI	GACGC	2 cut(s)	25, 260
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	20, 194
CviJI	RGCY	4 cut(s)	73, 127, 229, 287
CviKI_1	RGCY	4 cut(s)	73, 127, 229, 287
CviQI	GTAC	1 cut(s)	183
DpnI	GATC	2 cut(s)	5, 214
DpnII	GATC	2 cut(s)	3, 212
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	2 cut(s)	23, 197
FaiI	YATR	4 cut(s)	21, 189, 195, 304
FatI	CATG	2 cut(s)	19, 193
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	265
HgaI	GACGC	2 cut(s)	25, 260
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	23, 197
HinfI	GANTC	1 cut(s)	45
Hpy188I	TCNGA	2 cut(s)	212, 246
Hpy188III	TCNNGA	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	23, 197
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 212
LmnI	GCTCC	3 cut(s)	124, 272, 284
LpnPI	CCDG	3 cut(s)	44, 264, 282
Lsp1109I	GCAGC	1 cut(s)	251
MalI	GATC	2 cut(s)	5, 214
MboI	GATC	2 cut(s)	3, 212
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	26, 115, 275, 280
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	2 cut(s)	198, 246
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	2 cut(s)	3, 212
NlaIII	CATG	2 cut(s)	23, 197
NlaIV	GGNNCC	1 cut(s)	286
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	2 cut(s)	198, 246
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	2 cut(s)	3, 212
SchI	GAGTC	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	6 cut(s)	63, 75, 87, 118, 129, 188
SmiMI	CAYNNNNRTG	2 cut(s)	198, 246
SmlI	CTYRAG	2 cut(s)	74, 128
SmoI	CTYRAG	2 cut(s)	74, 128
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	69, 120
TasI	AATT	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	55, 211
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	55, 211
XceI	RCATGY	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.