Rh4DG071000

Microtubule-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010151
Physical Location & Seq
Reverse (-)
10567920 .. 10568390
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG071000.1

Sequence Viewer

Length: 471 bp
ATGATCAAGATGAAGACGCATGCGCATGTTAAGGGGAGAGGAGCTGGGAGGGTCACTGTGCAACAGGTGGTTTTCGAGCTCAAACAAAAGGTGGTTATTGCCCTGAACAAGCTTGCTGATCGGGATACTTACCAAATAGGTGTCGAGGAGCTTGAGAAAATGGCAGAGTGCTTGAACCCAGATGGGATTGCTCCATTTCTGTCGTGTATTTTGGATACAGATTCGGAACAGAAGAGCGCAGTGAGAAAGGAATGCATTAGGTTGATGGGTACATTAGTGAGGTATCATGAGGGGCATGTTGGAATGCATCTTGGTAAGATGGTTGCCAGTATTGTTAAGCGACTAAAAGACCCGGACTCTGTTGTGAGAGATGCATGTGTGGAGACTGTTGGTGTTCTGGCATCAAAATTGAGTGATGGTAGGGGTGACGGTGATGGGGTCTTTGTTGTCTTAGTAAGACCACTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cohesin_HEAT HEAT

Protein Analysis

156

Amino Acids

17.13

Weight (kDa)

8.69

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 25 - 156 2e-54 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 24
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 4 cut(s) 44, 79, 112, 151
AluI AGCT 4 cut(s) 44, 79, 112, 151
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 377
AspLEI GCGC 2 cut(s) 25, 239
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 437, 443
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 5 cut(s) 176, 259, 313, 410, 428
BciVI GTATCC 2 cut(s) 118, 208
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 377
BfuI GTATCC 2 cut(s) 118, 208
Bme1390I CCNGG 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 3 cut(s) 316, 361, 410
BpiI GAAGAC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 2 cut(s) 54, 161
BseYI CCCAGC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 377
BsmI GAATGC 2 cut(s) 257, 309
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 3, 118
BspHI TCATGA 1 cut(s) 286
BspQI GCTCTTC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 327
BssMI GATC 2 cut(s) 3, 118
Bst4CI ACNGT 3 cut(s) 58, 388, 431
Bst6I CTCTTC 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 21, 114
BstDEI CTNAG 1 cut(s) 451
BstHHI GCGC 2 cut(s) 25, 239
BstKTI GATC 2 cut(s) 6, 121
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 3, 118
BstNSI RCATGY 4 cut(s) 23, 29, 299, 378
BstSCI CCNGG 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 20
BsuI GTATCC 2 cut(s) 118, 208
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 54, 246
Cac8I GCNNGC 2 cut(s) 21, 114
CciI TCATGA 1 cut(s) 286
CfoI GCGC 2 cut(s) 25, 239
CseI GACGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 270
CviAII CATG 5 cut(s) 20, 26, 287, 296, 375
CviJI RGCY 4 cut(s) 44, 79, 112, 151
CviKI_1 RGCY 4 cut(s) 44, 79, 112, 151
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 451
DpnI GATC 2 cut(s) 5, 120
DpnII GATC 2 cut(s) 3, 118
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 79
EcoT22I ATGCAT 3 cut(s) 257, 309, 376
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 5 cut(s) 23, 29, 290, 299, 378
FaiI YATR 5 cut(s) 21, 27, 288, 297, 376
FatI CATG 5 cut(s) 19, 25, 286, 295, 374
FbaI TGATCA 1 cut(s) 3
FriOI GRGCYC 1 cut(s) 81
FspAI RTGCGCAY 1 cut(s) 24
FspI TGCGCA 1 cut(s) 24
GlaI GCGC 2 cut(s) 24, 238
GsaI CCCAGC 1 cut(s) 48
HapII CCGG 1 cut(s) 353
HgaI GACGC 1 cut(s) 25
HhaI GCGC 2 cut(s) 25, 239
Hin1II CATG 5 cut(s) 23, 29, 290, 299, 378
Hin6I GCGC 2 cut(s) 23, 237
HinP1I GCGC 2 cut(s) 23, 237
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 2 cut(s) 221, 356
HpaII CCGG 1 cut(s) 353
HphI GGTGA 2 cut(s) 437, 443
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 3 cut(s) 7, 122, 287
HpyCH4III ACNGT 3 cut(s) 58, 388, 431
HpyCH4V TGCA 4 cut(s) 61, 255, 307, 374
HpyF3I CTNAG 1 cut(s) 451
Hsp92II CATG 5 cut(s) 23, 29, 290, 299, 378
HspAI GCGC 2 cut(s) 23, 237
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 118
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 3 cut(s) 41, 148, 196
LpnPI CCDG 7 cut(s) 30, 50, 116, 192, 340, 366, 383
LweI GCATC 3 cut(s) 316, 361, 410
MaeIII GTNAC 2 cut(s) 52, 425
MalI GATC 2 cut(s) 5, 120
MboI GATC 2 cut(s) 3, 118
MboII GAAGA 2 cut(s) 25, 244
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 407
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 5 cut(s) 32, 42, 139, 273, 283
Mph1103I ATGCAT 3 cut(s) 257, 309, 376
MseI TTAA 2 cut(s) 30, 336
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 2 cut(s) 257, 309
NciI CCSGG 1 cut(s) 353
NdeII GATC 2 cut(s) 3, 118
NlaIII CATG 5 cut(s) 23, 29, 290, 299, 378
NmuCI GTSAC 2 cut(s) 52, 425
NsbI TGCGCA 1 cut(s) 24
NsiI ATGCAT 3 cut(s) 257, 309, 376
NspI RCATGY 4 cut(s) 23, 29, 299, 378
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 227
PctI GAATGC 2 cut(s) 257, 309
PfeI GAWTC 1 cut(s) 221
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 44
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 30, 336
Sau3AI GATC 2 cut(s) 3, 118
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 81
SetI ASST 9 cut(s) 46, 69, 81, 93, 114, 142, 153, 263, 284
SfaNI GCATC 3 cut(s) 316, 361, 410
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SphI GCATGC 1 cut(s) 23
Sse9I AATT 1 cut(s) 407
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 3 cut(s) 58, 388, 431
TaqI TCGA 2 cut(s) 75, 144
TasI AATT 1 cut(s) 407
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 30, 336
Tru9I TTAA 2 cut(s) 30, 336
TscAI CASTG 2 cut(s) 61, 246
TseFI GTSAC 2 cut(s) 52, 425
Tsp45I GTSAC 2 cut(s) 52, 425
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 2 cut(s) 61, 246
XceI RCATGY 4 cut(s) 23, 29, 299, 378
Zsp2I ATGCAT 3 cut(s) 257, 309, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.