Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0016405

Physical Location & Seq

Genomic Coordinates Forward (+)

36414609 .. 36415425

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1273700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGATATGTTCTGCAGCTAGAACACTCCTAAATTATGAGGGGCCTGTCCATCTGCCTGTTGTAGGCTATGGCGCAGGCCATGGCATTGGGGGCAATGCTGGATCAGGGTATGGCAGCGCTAGTGCTAGAGGTTATGGTGGCGGAGGAGGTGCAGGAAGTGGTGTTGGTTATGGAGCTGTAGGAGAGCATGGTGCTGCTGGACATGGAGGTGGTAGTGGTGGTGGAGAAGGTGGTGGTTTTGCCTATGGAGGTGCTAGTGGACAAGGTGGCGGCGGCGGTGGAGGAAGTGTGGCTATGGAGGAGGAGAAGGTGGTGGTGCTAGTGGGGGTTATGGTGCTGGTGGAGAACATAATGGAGGATATGGAGGTGGCAATGGGCATGGTGGTGGTGCTGGAGGAGGTTATGCTGTTGGAGGAGCAAGTGGAAGAGGATATGGGAGCGGTGGAGGAGCTGGGGCTGGAGTTGGTGGTGGTAGCTATGCAGGTGGTGGTGGTGGAGGTTTGGGTGGCGGCAGCGGCTACGGTGGAGTGCACGGAGGTGCATATGGAGGAGGTGGTGGGGTTGGTGAAGGTAGTGGTCATGGTGGTTATGTTCCTTGAAATTACCTTCACTTATTTGTCACTAAAGATATGCCTCGTCTTACCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

21.67

Weight (kDa)

4.2

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016405)

Species	Orthologous Gene IDs
malus_domestica	MD06G1035100.v1.1 MD16G1273700.v1.1
prunus_persica	Prupe.5G034800_v2.0.a1 Prupe.5G034900_v2.0.a1
pyrus_communis	pycom06g02900
rosa_chinensis	RchiOBHm_Chr7g0209821
rosa_laevigata	RLG00000003087
rosa_multiflora	Rmu_co8510463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248920
rosa_rugosa	Rorug07G0116400
rosa_samantha	Rh7AG250400 Rh7BG244500 Rh7CG266400 Rh7DG256200
rosa_wichuraiana	Rw7G021220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	475
Acc36I	ACCTGC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	443
AciI	CCGC	7 cut(s)	144, 273, 276, 279, 443, 512, 518
AclWI	GGATC	1 cut(s)	112
AfeI	AGCGCT	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	602
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	20, 179, 454, 479
AluI	AGCT	4 cut(s)	20, 179, 454, 479
Alw21I	GWGCWC	1 cut(s)	536
Alw44I	GTGCAC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	112
Aor51HI	AGCGCT	1 cut(s)	121
AoxI	GGCC	2 cut(s)	44, 79
ApaLI	GTGCAC	1 cut(s)	532
ApeKI	GCWGC	4 cut(s)	17, 117, 197, 515
AspLEI	GCGC	2 cut(s)	77, 122
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	580
BaeGI	GKGCMC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	4 cut(s)	29, 129, 184, 527
BccI	CCATC	1 cut(s)	60
BfaI	CTAG	5 cut(s)	21, 123, 129, 258, 323
BfmI	CTRYAG	2 cut(s)	15, 180
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	8 cut(s)	18, 118, 198, 274, 277, 513, 516, 519
BlsI	GCNGC	8 cut(s)	19, 119, 199, 275, 278, 514, 517, 520
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	45
BpmI	CTGGAG	2 cut(s)	416, 482
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse3DI	GCAATG	2 cut(s)	103, 381
BseDI	CCNNGG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	2 cut(s)	103, 381
BseRI	GAGGAG	7 cut(s)	162, 317, 320, 413, 431, 464, 566
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	4 cut(s)	29, 129, 184, 527
BseYI	CCCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	46, 81
BsiHKAI	GWGCWC	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	2 cut(s)	46, 81
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	7 cut(s)	144, 273, 276, 279, 443, 512, 518
BspANI	GGCC	2 cut(s)	46, 81
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	112
BsrBI	CCGCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	103, 381
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	79
BstDSI	CCRYGG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	77, 122
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 518
BstSFI	CTRYAG	2 cut(s)	15, 180
BstSLI	GKGCMC	1 cut(s)	536
BstV1I	GCAGC	4 cut(s)	29, 129, 184, 527
BstXI	CCANNNNNNTGG	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	46, 81
BtgI	CCRYGG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	2 cut(s)	77, 122
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	5 cut(s)	83, 191, 206, 382, 583
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	82
Eco47III	AGCGCT	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	86, 194, 209, 385, 586
FatI	CATG	5 cut(s)	82, 190, 205, 381, 582
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	8 cut(s)	18, 118, 198, 274, 277, 513, 516, 519
Fsp4HI	GCNGC	8 cut(s)	18, 118, 198, 274, 277, 513, 516, 519
FspBI	CTAG	5 cut(s)	21, 123, 129, 258, 323
GlaI	GCGC	2 cut(s)	76, 121
GluI	GCNGC	8 cut(s)	18, 118, 198, 274, 277, 513, 516, 519
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	2 cut(s)	416, 482
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	46, 81
HhaI	GCGC	2 cut(s)	77, 122
Hin1II	CATG	5 cut(s)	86, 194, 209, 385, 586
Hin6I	GCGC	2 cut(s)	75, 120
HinP1I	GCGC	2 cut(s)	75, 120
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	263, 534
Hpy8I	GTNNAC	2 cut(s)	263, 534
HpyAV	CCTTC	4 cut(s)	224, 304, 565, 619
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4V	TGCA	5 cut(s)	17, 155, 484, 534, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 518
Hsp92II	CATG	5 cut(s)	86, 194, 209, 385, 586
HspAI	GCGC	2 cut(s)	75, 120
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	4 cut(s)	176, 418, 440, 451
Lsp1109I	GCAGC	4 cut(s)	29, 129, 184, 527
MaeI	CTAG	5 cut(s)	21, 123, 129, 258, 323
MaeIII	GTNAC	1 cut(s)	621
MalI	GATC	1 cut(s)	106
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	2 cut(s)	34, 603
MmeI	TCCRAC	1 cut(s)	393
MseI	TTAA	1 cut(s)	652
MslI	CAYNNNNRTG	3 cut(s)	210, 386, 539
MspA1I	CMGCKG	1 cut(s)	518
MwoI	GCNNNNNNNGC	2 cut(s)	93, 518
NcoI	CCATGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	5 cut(s)	86, 194, 209, 385, 586
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	621
OliI	CACNNNNGTG	1 cut(s)	539
PaqCI	CACCTGC	1 cut(s)	475
PkrI	GCNGC	8 cut(s)	19, 119, 199, 275, 278, 514, 517, 520
PspFI	CCCAGC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	19
RseI	CAYNNNNRTG	3 cut(s)	210, 386, 539
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	8 cut(s)	18, 118, 198, 274, 277, 513, 516, 519
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	536
SfcI	CTRYAG	2 cut(s)	15, 180
SmiMI	CAYNNNNRTG	3 cut(s)	210, 386, 539
Sse9I	AATT	2 cut(s)	34, 603
SsiI	CCGC	7 cut(s)	144, 273, 276, 279, 443, 512, 518
SspMI	CTAG	5 cut(s)	21, 123, 129, 258, 323
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	526
TasI	AATT	2 cut(s)	34, 603
TauI	GCSGC	4 cut(s)	276, 279, 515, 521
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TseFI	GTSAC	1 cut(s)	621
TseI	GCWGC	4 cut(s)	17, 117, 197, 515
Tsp45I	GTSAC	1 cut(s)	621
TspGWI	ACGGA	1 cut(s)	551
VneI	GTGCAC	1 cut(s)	532
XagI	CCTNNNNNAGG	1 cut(s)	63
XspI	CTAG	5 cut(s)	21, 123, 129, 258, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.