Rh7CG266400

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016405
Physical Location & Seq
Reverse (-)
26121116 .. 26122538
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG266400.1

Sequence Viewer

Length: 819 bp
ATGGCTTCTCAAAGAGTTCAGAGTCTTGTTTTCTTCGTGTTATTAGGTCTAGGCATATGTTCTGCAGCAAGAACACTCCTGACTTATGAAACGTATCCTGCTATCGGCCATGGTGGCGGGGGTGGATCCGGGTATGGAGGTGGTGGTGCTGGAGGTGCAGGTGGTGGCGGAGGAGGTGGAGGCAGTGGAGGTGGTTATGGCGCTGTAGGTGAACATGGTGCTGCTGGCTATGGAGGCGGTAGTGGTGGTGGAGAAGGCGGTGGTGTTGCGTATGGAGGCGCTGGTGGACATGCGGGTGGTGGAGGAGGTGGCGGTGGAAGTGGTGGTGGCGGTGCATATGGCACTGGAGGGGCTTATGGTGCTGGCGGTGCTAATGGTTATGGAAGCGGTGGTGGTGAAGGAGGTGGTGCTGGACATGGTGGAGCTGGTGGTGCTGGTGGAGGCGGTGGTGGTGGTGGTTCTGGTGGCGGTGGGGGAGCTGCATATGGAGGAGAGCACGGCATTGGTTATGGAGGTGGAGAAGGTGGTGGTGCCGGTGGAGGCTATGGTGCTGGCGGCGAGCATGGTGCCGGATATGGAGGTGGTGGGGGTCACGGTGGTGGCGGAGGTTACGGTGCTGGAGGAGCAAGTGGAGGTGGATATGGAGGTGGCGGAGGAGCTGGAGGTGGAGCCGGAGGAGCTGCCGGTGGGTATGCTGGTGGTGGGGGCGGAGGCGCTGGAAACGGTGGTGGTGGTGGTGGTGGCGGTGCACATGGCGGTGCATATGGAGGAGGTGGCGGGAGCGGTGAGGGTGGTGGTCATGGTGGTTATATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

21.33

Weight (kDa)

5.75

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016405)

Species Orthologous Gene IDs
malus_domestica MD06G1035100.v1.1 MD16G1273700.v1.1
prunus_persica Prupe.5G034800_v2.0.a1 Prupe.5G034900_v2.0.a1
pyrus_communis pycom06g02900
rosa_chinensis RchiOBHm_Chr7g0209821
rosa_laevigata RLG00000003087
rosa_multiflora Rmu_co8510463.1_g000001
rosa_roxburghii Rroxscaffold_3G00248920
rosa_rugosa Rorug07G0116400
rosa_samantha Rh7AG250400 Rh7BG244500 Rh7CG266400 Rh7DG256200
rosa_wichuraiana Rw7G021220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 149
AccB1I GGYRCC 2 cut(s) 530, 566
AccBSI CCGCTC 1 cut(s) 783
AclWI GGATC 2 cut(s) 120, 133
AcoI YGGCCR 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 104
AleI CACNNNNGTG 1 cut(s) 597
AluBI AGCT 4 cut(s) 425, 479, 659, 680
AluI AGCT 4 cut(s) 425, 479, 659, 680
Alw21I GWGCWC 2 cut(s) 498, 751
Alw44I GTGCAC 1 cut(s) 747
AlwI GGATC 2 cut(s) 120, 133
AoxI GGCC 1 cut(s) 106
ApaLI GTGCAC 1 cut(s) 747
ApeKI GCWGC 4 cut(s) 65, 221, 479, 680
AspLEI GCGC 3 cut(s) 203, 281, 716
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 221, 407, 797
BaeGI GKGCMC 1 cut(s) 751
BamHI GGATCC 1 cut(s) 125
BanI GGYRCC 2 cut(s) 530, 566
Bbv12I GWGCWC 2 cut(s) 498, 751
BbvI GCAGC 4 cut(s) 77, 208, 466, 667
BceAI ACGGC 1 cut(s) 514
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciVI GTATCC 1 cut(s) 105
BcnI CCSGG 1 cut(s) 130
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 2 cut(s) 63, 204
BfoI RGCGCY 3 cut(s) 204, 282, 717
BfuAI ACCTGC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 5 cut(s) 66, 222, 480, 556, 681
BlsI GCNGC 5 cut(s) 67, 223, 481, 557, 682
Bme1390I CCNGG 1 cut(s) 130
BmiI GGNNCC 4 cut(s) 127, 532, 568, 670
BmrFI CCNGG 1 cut(s) 130
BpmI CTGGAG 4 cut(s) 171, 366, 639, 681
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 2 cut(s) 533, 683
Bse1I ACTGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 7 cut(s) 186, 318, 504, 636, 669, 690, 783
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 4 cut(s) 77, 208, 466, 667
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 2 cut(s) 530, 566
BsiHKAI GWGCWC 2 cut(s) 498, 751
BsiSI CCGG 5 cut(s) 129, 534, 570, 672, 684
BslI CCNNNNNNNGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 498, 751
Bsp143I GATC 1 cut(s) 125
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 4 cut(s) 127, 532, 568, 670
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 2 cut(s) 120, 133
BspT107I GGYRCC 2 cut(s) 530, 566
BsrBI CCGCTC 1 cut(s) 783
BsrFI RCCGGY 2 cut(s) 533, 683
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 2 cut(s) 533, 683
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 3 cut(s) 596, 614, 725
BstC8I GCNNGC 4 cut(s) 226, 364, 553, 560
BstDSI CCRYGG 1 cut(s) 109
BstH2I RGCGCY 3 cut(s) 204, 282, 717
BstHHI GCGC 3 cut(s) 203, 281, 716
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstMWI GCNNNNNNNGC 8 cut(s) 114, 155, 234, 359, 368, 431, 623, 677
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 2 cut(s) 63, 204
BstSLI GKGCMC 1 cut(s) 751
BstV1I GCAGC 4 cut(s) 77, 208, 466, 667
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 190, 342
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 4 cut(s) 226, 364, 553, 560
CfoI GCGC 3 cut(s) 203, 281, 716
Cfr10I RCCGGY 2 cut(s) 533, 683
CviAII CATG 7 cut(s) 110, 215, 290, 416, 563, 752, 800
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 106
EciI GGCGGA 4 cut(s) 183, 618, 666, 723
Eco130I CCWWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 7 cut(s) 113, 218, 293, 419, 566, 755, 803
FatI CATG 7 cut(s) 109, 214, 289, 415, 562, 751, 799
FauI CCCGC 3 cut(s) 110, 286, 770
FauNDI CATATG 4 cut(s) 56, 337, 484, 763
Fnu4HI GCNGC 5 cut(s) 66, 222, 480, 556, 681
Fsp4HI GCNGC 5 cut(s) 66, 222, 480, 556, 681
FspBI CTAG 1 cut(s) 50
GlaI GCGC 3 cut(s) 202, 280, 715
GluI GCNGC 5 cut(s) 66, 222, 480, 556, 681
GsuI CTGGAG 4 cut(s) 171, 366, 639, 681
HaeII RGCGCY 3 cut(s) 204, 282, 717
HaeIII GGCC 1 cut(s) 108
HapII CCGG 5 cut(s) 129, 534, 570, 672, 684
HhaI GCGC 3 cut(s) 203, 281, 716
Hin1II CATG 7 cut(s) 113, 218, 293, 419, 566, 755, 803
Hin6I GCGC 3 cut(s) 201, 279, 714
HinP1I GCGC 3 cut(s) 201, 279, 714
HinfI GANTC 1 cut(s) 22
HpaII CCGG 5 cut(s) 129, 534, 570, 672, 684
HphI GGTGA 3 cut(s) 221, 407, 797
Hpy166II GTNNAC 3 cut(s) 212, 287, 749
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 212, 287, 749
HpyAV CCTTC 3 cut(s) 248, 392, 515
HpyCH4III ACNGT 3 cut(s) 596, 614, 725
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 6 cut(s) 65, 158, 335, 482, 749, 761
HpyF10VI GCNNNNNNNGC 8 cut(s) 114, 155, 234, 359, 368, 431, 623, 677
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 7 cut(s) 113, 218, 293, 419, 566, 755, 803
HspAI GCGC 3 cut(s) 201, 279, 714
Kzo9I GATC 1 cut(s) 125
LmnI GCTCC 7 cut(s) 422, 476, 623, 656, 668, 677, 780
Lsp1109I GCAGC 4 cut(s) 77, 208, 466, 667
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 590, 608
MalI GATC 1 cut(s) 127
MbiI CCGCTC 1 cut(s) 783
MboI GATC 1 cut(s) 125
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 498, 751
MlyI GAGTC 1 cut(s) 31
MslI CAYNNNNRTG 3 cut(s) 294, 597, 756
MspI CCGG 5 cut(s) 129, 534, 570, 672, 684
MspR9I CCNGG 1 cut(s) 130
MwoI GCNNNNNNNGC 8 cut(s) 114, 155, 234, 359, 368, 431, 623, 677
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 109
NdeI CATATG 4 cut(s) 56, 337, 484, 763
NdeII GATC 1 cut(s) 125
NlaIII CATG 7 cut(s) 113, 218, 293, 419, 566, 755, 803
NlaIV GGNNCC 4 cut(s) 127, 532, 568, 670
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 597
PaqCI CACCTGC 1 cut(s) 149
PkrI GCNGC 5 cut(s) 67, 223, 481, 557, 682
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 4 cut(s) 127, 532, 568, 670
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 125
RseI CAYNNNNRTG 3 cut(s) 294, 597, 756
SatI GCNGC 5 cut(s) 66, 222, 480, 556, 681
Sau3AI GATC 1 cut(s) 125
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 2 cut(s) 498, 751
SfcI CTRYAG 2 cut(s) 63, 204
SmiMI CAYNNNNRTG 3 cut(s) 294, 597, 756
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 596, 614, 725
TaiI ACGT 1 cut(s) 95
TauI GCSGC 1 cut(s) 558
TscAI CASTG 2 cut(s) 190, 349
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 4 cut(s) 65, 221, 479, 680
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 2 cut(s) 190, 349
VneI GTGCAC 1 cut(s) 747
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.