Rmu_co8510463.1_g000001

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8510463.1
OG0016405
Physical Location & Seq
Reverse (-)
2 .. 802
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8510463.1_g000001.1.cds

Sequence Viewer

Length: 801 bp
atggcttctcaaagagttcagagtcttgttttcttcgtgttattaggtctaggcatatgttctgcagcaagaacactcctgacttatgaaacgtatcctgctataggccatggtggcgggggtggatccgggtatggaggtggtggtgctggaggtgcaggtggtggcggaggaggtggaggcagtggaggtggttatggcgctgtaggtgaacatggtgctgctggctatggaggcggtagtggtggtggagaaggcggtggtgttgcgtatggaggcgctggtggacatgcgggtggtggaggaggtggcggtggaagtggtggtggcggtgcatatggcactggaggggcttatggtgctggcggtgctgaaggttatggaagcggtggtggtgaaggaggtggtgccgggtatggtggagctggtggtgctggtggaggcggtggtggtagtggttctggtggtggtgggggagctgcatatggaggagagcacggcattggttatggaggtggagaaggtggtggtgccggtggaggctatggtgctggcggccagcatggtgccggatatggaggtggtgggggtcacggtggtggcggaggttacggtgctggaggagcaagtggaggtggatatggaggtggcggaggagctggaggtggagccggaggagctgctggtgggtatgctggtggtgggggcggaggcgcgggaagcggtggtggtggtggtggtgcacatggcggtgcatatggaggaggtggcgggagcggtgagggtggcggtcatggtggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

20.89

Weight (kDa)

5.63

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016405)

Species Orthologous Gene IDs
malus_domestica MD06G1035100.v1.1 MD16G1273700.v1.1
prunus_persica Prupe.5G034800_v2.0.a1 Prupe.5G034900_v2.0.a1
pyrus_communis pycom06g02900
rosa_chinensis RchiOBHm_Chr7g0209821
rosa_laevigata RLG00000003087
rosa_multiflora Rmu_co8510463.1_g000001
rosa_roxburghii Rroxscaffold_3G00248920
rosa_rugosa Rorug07G0116400
rosa_samantha Rh7AG250400 Rh7BG244500 Rh7CG266400 Rh7DG256200
rosa_wichuraiana Rw7G021220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 149
AccB1I GGYRCC 3 cut(s) 407, 530, 566
AccBSI CCGCTC 1 cut(s) 777
AccII CGCG 1 cut(s) 716
AclWI GGATC 2 cut(s) 120, 133
AcoI YGGCCR 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 104
AleI CACNNNNGTG 1 cut(s) 597
AluBI AGCT 4 cut(s) 425, 479, 659, 680
AluI AGCT 4 cut(s) 425, 479, 659, 680
Alw21I GWGCWC 2 cut(s) 498, 745
Alw44I GTGCAC 1 cut(s) 741
AlwI GGATC 2 cut(s) 120, 133
AoxI GGCC 2 cut(s) 106, 556
ApaLI GTGCAC 1 cut(s) 741
ApeKI GCWGC 4 cut(s) 65, 221, 479, 680
AspLEI GCGC 3 cut(s) 203, 281, 716
AsuC2I CCSGG 2 cut(s) 130, 412
AsuHPI GGTGA 3 cut(s) 221, 407, 791
BaeGI GKGCMC 1 cut(s) 745
BamHI GGATCC 1 cut(s) 125
BanI GGYRCC 3 cut(s) 407, 530, 566
Bbv12I GWGCWC 2 cut(s) 498, 745
BbvI GCAGC 4 cut(s) 77, 208, 466, 667
BceAI ACGGC 1 cut(s) 514
BciVI GTATCC 1 cut(s) 105
BcnI CCSGG 2 cut(s) 130, 412
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 3 cut(s) 63, 102, 204
BfoI RGCGCY 2 cut(s) 204, 282
BfuAI ACCTGC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 5 cut(s) 66, 222, 480, 556, 681
BlsI GCNGC 5 cut(s) 67, 223, 481, 557, 682
Bme1390I CCNGG 2 cut(s) 130, 412
BmiI GGNNCC 5 cut(s) 127, 409, 532, 568, 670
BmrFI CCNGG 2 cut(s) 130, 412
BpmI CTGGAG 4 cut(s) 171, 366, 639, 681
BpuMI CCSGG 2 cut(s) 130, 412
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 7 cut(s) 186, 318, 504, 636, 669, 690, 777
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 4 cut(s) 77, 208, 466, 667
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 716
BshFI GGCC 2 cut(s) 108, 558
BshNI GGYRCC 3 cut(s) 407, 530, 566
BsiHKAI GWGCWC 2 cut(s) 498, 745
BsiSI CCGG 5 cut(s) 129, 411, 534, 570, 672
BslI CCNNNNNNNGG 1 cut(s) 104
BsnI GGCC 2 cut(s) 108, 558
Bsp1286I GDGCHC 2 cut(s) 498, 745
Bsp143I GATC 1 cut(s) 125
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 2 cut(s) 108, 558
BspFNI CGCG 1 cut(s) 716
BspLI GGNNCC 5 cut(s) 127, 409, 532, 568, 670
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 2 cut(s) 120, 133
BspT107I GGYRCC 3 cut(s) 407, 530, 566
BsrBI CCGCTC 1 cut(s) 777
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 596, 614
BstC8I GCNNGC 4 cut(s) 226, 364, 553, 560
BstDSI CCRYGG 1 cut(s) 109
BstENI CCTNNNNNAGG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 716
BstH2I RGCGCY 2 cut(s) 204, 282
BstHHI GCGC 3 cut(s) 203, 281, 716
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstMWI GCNNNNNNNGC 9 cut(s) 114, 155, 234, 359, 368, 431, 623, 677, 720
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 128, 410
BstSFI CTRYAG 3 cut(s) 63, 102, 204
BstSLI GKGCMC 1 cut(s) 745
BstUI CGCG 1 cut(s) 716
BstV1I GCAGC 4 cut(s) 77, 208, 466, 667
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 108, 558
BtgI CCRYGG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 190, 342
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 4 cut(s) 226, 364, 553, 560
CfoI GCGC 3 cut(s) 203, 281, 716
Cfr10I RCCGGY 1 cut(s) 533
CviAII CATG 6 cut(s) 110, 215, 290, 563, 746, 794
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 556
EciI GGCGGA 4 cut(s) 183, 618, 666, 723
Eco130I CCWWGG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 113, 218, 293, 566, 749, 797
FatI CATG 6 cut(s) 109, 214, 289, 562, 745, 793
FauI CCCGC 4 cut(s) 110, 286, 709, 764
FauNDI CATATG 4 cut(s) 56, 337, 484, 757
Fnu4HI GCNGC 5 cut(s) 66, 222, 480, 556, 681
Fsp4HI GCNGC 5 cut(s) 66, 222, 480, 556, 681
FspBI CTAG 1 cut(s) 50
GlaI GCGC 3 cut(s) 202, 280, 715
GluI GCNGC 5 cut(s) 66, 222, 480, 556, 681
GsuI CTGGAG 4 cut(s) 171, 366, 639, 681
HaeII RGCGCY 2 cut(s) 204, 282
HaeIII GGCC 2 cut(s) 108, 558
HapII CCGG 5 cut(s) 129, 411, 534, 570, 672
HhaI GCGC 3 cut(s) 203, 281, 716
Hin1II CATG 6 cut(s) 113, 218, 293, 566, 749, 797
Hin6I GCGC 3 cut(s) 201, 279, 714
HinP1I GCGC 3 cut(s) 201, 279, 714
HinfI GANTC 1 cut(s) 22
HpaII CCGG 5 cut(s) 129, 411, 534, 570, 672
HphI GGTGA 3 cut(s) 221, 407, 791
Hpy166II GTNNAC 3 cut(s) 212, 287, 743
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 212, 287, 743
HpyAV CCTTC 4 cut(s) 248, 368, 392, 515
HpyCH4III ACNGT 2 cut(s) 596, 614
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 6 cut(s) 65, 158, 335, 482, 743, 755
HpyF10VI GCNNNNNNNGC 9 cut(s) 114, 155, 234, 359, 368, 431, 623, 677, 720
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 6 cut(s) 113, 218, 293, 566, 749, 797
HspAI GCGC 3 cut(s) 201, 279, 714
Kzo9I GATC 1 cut(s) 125
LmnI GCTCC 7 cut(s) 422, 476, 623, 656, 668, 677, 774
Lsp1109I GCAGC 4 cut(s) 77, 208, 466, 667
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 590, 608
MalI GATC 1 cut(s) 127
MbiI CCGCTC 1 cut(s) 777
MboI GATC 1 cut(s) 125
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 498, 745
MlyI GAGTC 1 cut(s) 31
MslI CAYNNNNRTG 3 cut(s) 294, 597, 750
MspI CCGG 5 cut(s) 129, 411, 534, 570, 672
MspR9I CCNGG 2 cut(s) 130, 412
MvnI CGCG 1 cut(s) 716
MwoI GCNNNNNNNGC 9 cut(s) 114, 155, 234, 359, 368, 431, 623, 677, 720
NciI CCSGG 2 cut(s) 130, 412
NcoI CCATGG 1 cut(s) 109
NdeI CATATG 4 cut(s) 56, 337, 484, 757
NdeII GATC 1 cut(s) 125
NlaIII CATG 6 cut(s) 113, 218, 293, 566, 749, 797
NlaIV GGNNCC 5 cut(s) 127, 409, 532, 568, 670
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 597
PaqCI CACCTGC 1 cut(s) 149
PkrI GCNGC 5 cut(s) 67, 223, 481, 557, 682
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 5 cut(s) 127, 409, 532, 568, 670
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 125
RseI CAYNNNNRTG 3 cut(s) 294, 597, 750
SatI GCNGC 5 cut(s) 66, 222, 480, 556, 681
Sau3AI GATC 1 cut(s) 125
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 130, 412
SduI GDGCHC 2 cut(s) 498, 745
SfcI CTRYAG 3 cut(s) 63, 102, 204
SmiMI CAYNNNNRTG 3 cut(s) 294, 597, 750
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 128, 410
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 596, 614
TaiI ACGT 1 cut(s) 95
TauI GCSGC 1 cut(s) 558
TscAI CASTG 2 cut(s) 190, 349
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 4 cut(s) 65, 221, 479, 680
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 2 cut(s) 190, 349
VneI GTGCAC 1 cut(s) 741
XagI CCTNNNNNAGG 1 cut(s) 102
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.