RchiOBHm_Chr7g0209821

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016405
Physical Location & Seq
Reverse (-)
27302041 .. 27303165
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18776

Sequence Viewer

Length: 714 bp
ATGGCTTCTCAAAGAGTTCAGAGTCTTGTTTTCTTCGTGTTATTAGGTGTAGGCATATGTTCTGCAGCAAGAACACTCCTGACTTATGAAACGTATCCTGCTATCGGCCATGGTGGCGGGGGTGGGTCCGGGTATGGAGGTGGTTATGGCGCTGTAGGTGAACATGGTGCTGCTGGCTATGGAGGCGGTAGTGGTGGTGGAGAAGGCGGTGGTGTTGCGTATGGAGGCGCTGGTGGACATGCGGGTGGTGGAGGAGGTGGCGGTGGAAGTGGTGGTGGCGGTGCATATGGCACTGGAGGGGCTTATGGTGCTGGCGGTGCTAATGGTTATGGAAGCGGTGGTGGTGAAGGAGGTGGTGCTGGGTATGGTGGAGCTGGTGGTGCTGGTGGAGGCGGTGGTGGTGGTGGTTCTGGTGGTGGTGGGGGAGCTGCATATGGAGGAGAGCACGGCATTGGTTATGGAGGTGGAGAAGGTGGTGGTGCCGGTGGAGGCTATGGTGCTGGCGGCGAGCATGGTGCCGGATATGGAGGTGGTGGGGGTCACGGTGGTGGCGGAGGTTACGGTGCTGGAGGAGCAAGTGGAGGTGGATATGGAGGTGGCGGAGGAGCTGGAGGCGCTGGAAGCGGTGGTGGTGGTGGTGGTGCACATGGCGGTGCATATGGAGGAGGTGGCGGGAGCGGTGAGGGTGGTGGTCATGGTGGTTATATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

19.1

Weight (kDa)

5.63

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016405)

Species Orthologous Gene IDs
malus_domestica MD06G1035100.v1.1 MD16G1273700.v1.1
prunus_persica Prupe.5G034800_v2.0.a1 Prupe.5G034900_v2.0.a1
pyrus_communis pycom06g02900
rosa_chinensis RchiOBHm_Chr7g0209821
rosa_laevigata RLG00000003087
rosa_multiflora Rmu_co8510463.1_g000001
rosa_roxburghii Rroxscaffold_3G00248920
rosa_rugosa Rorug07G0116400
rosa_samantha Rh7AG250400 Rh7BG244500 Rh7CG266400 Rh7DG256200
rosa_wichuraiana Rw7G021220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 479, 515
AccBSI CCGCTC 1 cut(s) 678
AcoI YGGCCR 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 104
AleI CACNNNNGTG 1 cut(s) 546
AluBI AGCT 3 cut(s) 374, 428, 608
AluI AGCT 3 cut(s) 374, 428, 608
Alw21I GWGCWC 2 cut(s) 447, 646
Alw44I GTGCAC 1 cut(s) 642
AoxI GGCC 1 cut(s) 106
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 3 cut(s) 65, 170, 428
AspLEI GCGC 3 cut(s) 152, 230, 617
AspS9I GGNCC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 170, 356, 692
AvaII GGWCC 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 646
BanI GGYRCC 2 cut(s) 479, 515
Bbv12I GWGCWC 2 cut(s) 447, 646
BbvI GCAGC 3 cut(s) 77, 157, 415
BceAI ACGGC 1 cut(s) 463
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciVI GTATCC 1 cut(s) 105
BcnI CCSGG 1 cut(s) 130
BfmI CTRYAG 2 cut(s) 63, 153
BfoI RGCGCY 3 cut(s) 153, 231, 618
BfuI GTATCC 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 4 cut(s) 66, 171, 429, 505
BlsI GCNGC 4 cut(s) 67, 172, 430, 506
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 3 cut(s) 127, 481, 517
BmrFI CCNGG 1 cut(s) 130
BpmI CTGGAG 3 cut(s) 315, 588, 630
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 5 cut(s) 267, 453, 585, 618, 678
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 3 cut(s) 77, 157, 415
BseYI CCCAGC 1 cut(s) 359
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 2 cut(s) 479, 515
BsiHKAI GWGCWC 2 cut(s) 447, 646
BsiSI CCGG 3 cut(s) 129, 483, 519
BslI CCNNNNNNNGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 447, 646
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 127, 481, 517
BspMAI CTGCAG 1 cut(s) 67
BspT107I GGYRCC 2 cut(s) 479, 515
BsrBI CCGCTC 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 545, 563
BstC8I GCNNGC 4 cut(s) 175, 313, 502, 509
BstDSI CCRYGG 1 cut(s) 109
BstH2I RGCGCY 3 cut(s) 153, 231, 618
BstHHI GCGC 3 cut(s) 152, 230, 617
BstMWI GCNNNNNNNGC 8 cut(s) 114, 183, 308, 317, 380, 572, 614, 621
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 2 cut(s) 63, 153
BstSLI GKGCMC 1 cut(s) 646
BstV1I GCAGC 3 cut(s) 77, 157, 415
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 4 cut(s) 175, 313, 502, 509
CfoI GCGC 3 cut(s) 152, 230, 617
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 126
CviAII CATG 6 cut(s) 110, 164, 239, 512, 647, 695
CviJI RGCY 8 cut(s) 5, 108, 177, 302, 374, 428, 492, 608
CviKI_1 RGCY 8 cut(s) 5, 108, 177, 302, 374, 428, 492, 608
EaeI YGGCCR 1 cut(s) 106
EciI GGCGGA 2 cut(s) 567, 615
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 113, 167, 242, 515, 650, 698
FatI CATG 6 cut(s) 109, 163, 238, 511, 646, 694
FauI CCCGC 3 cut(s) 110, 235, 665
FauNDI CATATG 4 cut(s) 56, 286, 433, 658
Fnu4HI GCNGC 4 cut(s) 66, 171, 429, 505
Fsp4HI GCNGC 4 cut(s) 66, 171, 429, 505
GlaI GCGC 3 cut(s) 151, 229, 616
GluI GCNGC 4 cut(s) 66, 171, 429, 505
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 3 cut(s) 315, 588, 630
HaeII RGCGCY 3 cut(s) 153, 231, 618
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 129, 483, 519
HhaI GCGC 3 cut(s) 152, 230, 617
Hin1II CATG 6 cut(s) 113, 167, 242, 515, 650, 698
Hin6I GCGC 3 cut(s) 150, 228, 615
HinP1I GCGC 3 cut(s) 150, 228, 615
HinfI GANTC 1 cut(s) 22
HpaII CCGG 3 cut(s) 129, 483, 519
HphI GGTGA 3 cut(s) 170, 356, 692
Hpy166II GTNNAC 3 cut(s) 161, 236, 644
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 161, 236, 644
HpyAV CCTTC 3 cut(s) 197, 341, 464
HpyCH4III ACNGT 2 cut(s) 545, 563
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 5 cut(s) 65, 284, 431, 644, 656
HpyF10VI GCNNNNNNNGC 8 cut(s) 114, 183, 308, 317, 380, 572, 614, 621
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 6 cut(s) 113, 167, 242, 515, 650, 698
HspAI GCGC 3 cut(s) 150, 228, 615
LmnI GCTCC 5 cut(s) 371, 425, 572, 605, 675
Lsp1109I GCAGC 3 cut(s) 77, 157, 415
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 539, 557
MbiI CCGCTC 1 cut(s) 678
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 447, 646
MlyI GAGTC 1 cut(s) 31
MslI CAYNNNNRTG 3 cut(s) 243, 546, 651
MspI CCGG 3 cut(s) 129, 483, 519
MspR9I CCNGG 1 cut(s) 130
MwoI GCNNNNNNNGC 8 cut(s) 114, 183, 308, 317, 380, 572, 614, 621
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 109
NdeI CATATG 4 cut(s) 56, 286, 433, 658
NlaIII CATG 6 cut(s) 113, 167, 242, 515, 650, 698
NlaIV GGNNCC 3 cut(s) 127, 481, 517
NmuCI GTSAC 1 cut(s) 539
NspI RCATGY 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 546
PkrI GCNGC 4 cut(s) 67, 172, 430, 506
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 127, 481, 517
PspPI GGNCC 1 cut(s) 126
PstI CTGCAG 1 cut(s) 67
RseI CAYNNNNRTG 3 cut(s) 243, 546, 651
SatI GCNGC 4 cut(s) 66, 171, 429, 505
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 2 cut(s) 447, 646
SfcI CTRYAG 2 cut(s) 63, 153
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 3 cut(s) 243, 546, 651
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 545, 563
TaiI ACGT 1 cut(s) 95
TauI GCSGC 1 cut(s) 507
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 3 cut(s) 65, 170, 428
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 1 cut(s) 298
VneI GTGCAC 1 cut(s) 642
VpaK11BI GGWCC 1 cut(s) 126
XceI RCATGY 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.