Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016405

Physical Location & Seq

Genomic Coordinates Forward (+)

3971332 .. 3973079

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCGCAAATGTAGAGGCCAGACTTTTTACTGGAACACCTCAAATTCTCTTCTGCATGTGCTTCAACCACCTTGTGCTCAGTCCACCTTTTCCCATTCCTATATATACCTTCACCTCTCTTGCATTCTACTCCATTGTTGTGGATTCAACTGCATTACTTCAATGACTATTCAAAACACTCACAGTTTTGTCTTCTTTGTGTTATTGGGTATAGGGATATGTTCTGCAGCCAGAACACTCCTACATTATGAAGAGCCCGTCCATGTTCCTGCTGTCGGCTATGGCGCAGGCCATGGTGGCGGCGGCGGTGGCGGCGGCGGTGGCAGCGGTGGTGGATCGGGTTATGGAGGTGGTGGTGCTGCGGGTTATGGTGGTGTTGGGGGATATGGTGGCGGAGGAGTGCAGAAGTGGTGGGGGTTATGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

14.59

Weight (kDa)

8.52

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016405)

Species	Orthologous Gene IDs
malus_domestica	MD06G1035100.v1.1 MD16G1273700.v1.1
prunus_persica	Prupe.5G034800_v2.0.a1 Prupe.5G034900_v2.0.a1
pyrus_communis	pycom06g02900
rosa_chinensis	RchiOBHm_Chr7g0209821
rosa_laevigata	RLG00000003087
rosa_multiflora	Rmu_co8510463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248920
rosa_rugosa	Rorug07G0116400
rosa_samantha	Rh7AG250400 Rh7BG244500 Rh7CG266400 Rh7DG256200
rosa_wichuraiana	Rw7G021220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	9 cut(s)	300, 303, 306, 312, 315, 318, 327, 362, 393
AclWI	GGATC	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	65, 148, 162, 173
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	343
AoxI	GGCC	2 cut(s)	16, 289
ApeKI	GCWGC	3 cut(s)	227, 324, 359
ApoI	RAATTY	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	6, 287
AsuHPI	GGTGA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	239, 336, 346
BfmI	CTRYAG	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	7 cut(s)	228, 301, 304, 313, 316, 325, 360
BlsI	GCNGC	7 cut(s)	229, 302, 305, 314, 317, 326, 361
BpiI	GAAGAC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	239, 336, 346
BsgI	GTGCAG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	18, 291
BsiHKAI	GWGCWC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	18, 291
Bsp1286I	GDGCHC	2 cut(s)	79, 258
Bsp143I	GATC	1 cut(s)	335
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	9 cut(s)	300, 303, 306, 312, 315, 318, 327, 362, 393
BspANI	GGCC	2 cut(s)	18, 291
BspCNI	CTCAG	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	229
BspPI	GGATC	1 cut(s)	343
BspQI	GCTCTTC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	54, 246
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	292
BstHHI	GCGC	2 cut(s)	6, 287
BstKTI	GATC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	5 cut(s)	297, 309, 312, 321, 324
BstNSI	RCATGY	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	239, 336, 346
BstV2I	GAAGAC	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	18, 291
BtgI	CCRYGG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	2 cut(s)	6, 287
CviAII	CATG	3 cut(s)	56, 263, 293
CviJI	RGCY	5 cut(s)	18, 230, 256, 279, 291
CviKI_1	RGCY	5 cut(s)	18, 230, 256, 279, 291
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	1 cut(s)	337
DpnII	GATC	1 cut(s)	335
DraIII	CACNNNGTG	1 cut(s)	74
Eam1104I	CTCTTC	2 cut(s)	54, 246
EarI	CTCTTC	2 cut(s)	54, 246
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	3 cut(s)	59, 266, 296
FatI	CATG	3 cut(s)	55, 262, 292
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	7 cut(s)	228, 301, 304, 313, 316, 325, 360
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	7 cut(s)	228, 301, 304, 313, 316, 325, 360
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 286
GluI	GCNGC	7 cut(s)	228, 301, 304, 313, 316, 325, 360
HaeIII	GGCC	2 cut(s)	18, 291
HhaI	GCGC	2 cut(s)	6, 287
Hin1II	CATG	3 cut(s)	59, 266, 296
Hin6I	GCGC	2 cut(s)	4, 285
HinP1I	GCGC	2 cut(s)	4, 285
HinfI	GANTC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	84
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	55, 123, 153, 227, 403
HpyF10VI	GCNNNNNNNGC	5 cut(s)	297, 309, 312, 321, 324
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	59, 266, 296
HspAI	GCGC	2 cut(s)	4, 285
Kzo9I	GATC	1 cut(s)	335
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	5 cut(s)	16, 32, 244, 273, 282
Lsp1109I	GCAGC	3 cut(s)	239, 336, 346
MalI	GATC	1 cut(s)	337
MboI	GATC	1 cut(s)	335
MboII	GAAGA	3 cut(s)	41, 184, 263
MhlI	GDGCHC	2 cut(s)	79, 258
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	5 cut(s)	8, 49, 125, 341, 389
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	123
MwoI	GCNNNNNNNGC	5 cut(s)	297, 309, 312, 321, 324
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	1 cut(s)	335
NlaIII	CATG	3 cut(s)	59, 266, 296
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	7 cut(s)	229, 302, 305, 314, 317, 326, 361
PstI	CTGCAG	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	7 cut(s)	228, 301, 304, 313, 316, 325, 360
Sau3AI	GATC	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	79, 258
SetI	ASST	6 cut(s)	41, 73, 89, 111, 117, 352
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	9 cut(s)	300, 303, 306, 312, 315, 318, 327, 362, 393
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	185
TasI	AATT	1 cut(s)	43
TauI	GCSGC	4 cut(s)	303, 306, 315, 318
TfiI	GAWTC	1 cut(s)	144
TseI	GCWGC	3 cut(s)	227, 324, 359
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	1 cut(s)	43
XceI	RCATGY	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.