RLG00000003087

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016405
Physical Location & Seq
Forward (+)
44292838 .. 44293665
828 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003087

Sequence Viewer

Length: 828 bp
ATGGCTTCTCAAAGAGTTCAGAGTCTTGTTTTCTTCGTGTTATTAGGTCTGGGCATATGTTCTGCAGCAAGAACACTCCTGACTTATGAAACGTATCCTGCTATCGGCCATGGTGGCGGGGGTGGATCCGGGTATGGAGGTGGTGGTGCTGGAGGTGCTGGTGGTGGCGGAGGAGGTGGAGGAGGTGGAGGTGGAGGCAGTGGAGGTGGTTATGGCGCTGTAGGTGAACATGGTGCTGCTGGCTATGGAGGCGGTAGTGGTGGTGGAGAAGGCGGTGGTGTTGCCTATGGAGGCGCTGGTGGACATGCGGGTGGTGGAGGAGGTGGCGGTGGAAGTGGTGGCGGCGGTGCATATGGCACTGGAGGGGCTTATGGTGCTGGCAGTGCTGAAGGTTATGGAAGCGGTGGTGGTAAAGGAGGTGGTGCCGGGTATGGTGGAGCTGGTGGTGCTGGTGGAGGCGGTGGTGGTGGTGGTTCTGGTGGTGGCGGGGGAGCTGCATATGGAGGAGAGCACGGCATTGGTTATGGAGGTGGAGAAGGTGGTGGTGCCGGTGGAGGCTATGGTGCTGGCGGCGAGCATGGTGCCGGATATGGAGCTGGTGGGGGTCACGGTGGTGGCGGAGGTTACGGTGCTGGAGGAGCTAGTGGAGGTGGATATGGAGGTGGCGAAGGAGCTGGAGGTGGAGCCGGAGGAGCTGCCGGTGGGTATGCTGGTGGTGGGGGCGGAGGCGCTGGAAGCGGTGGTGGTGGTGGTGGTGCACATGGAGGTGCATATGGAGGAGGTGGCGGGAGCGGTGAGGGTGGTGGTCATGGTGGTTATATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

21.63

Weight (kDa)

5.64

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016405)

Species Orthologous Gene IDs
malus_domestica MD06G1035100.v1.1 MD16G1273700.v1.1
prunus_persica Prupe.5G034800_v2.0.a1 Prupe.5G034900_v2.0.a1
pyrus_communis pycom06g02900
rosa_chinensis RchiOBHm_Chr7g0209821
rosa_laevigata RLG00000003087
rosa_multiflora Rmu_co8510463.1_g000001
rosa_roxburghii Rroxscaffold_3G00248920
rosa_rugosa Rorug07G0116400
rosa_samantha Rh7AG250400 Rh7BG244500 Rh7CG266400 Rh7DG256200
rosa_wichuraiana Rw7G021220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 422, 545, 581
AccBSI CCGCTC 1 cut(s) 792
AclWI GGATC 2 cut(s) 120, 133
AcoI YGGCCR 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 104
AleI CACNNNNGTG 1 cut(s) 612
AluBI AGCT 6 cut(s) 440, 494, 596, 641, 674, 695
AluI AGCT 6 cut(s) 440, 494, 596, 641, 674, 695
Alw21I GWGCWC 2 cut(s) 513, 760
Alw44I GTGCAC 1 cut(s) 756
AlwI GGATC 2 cut(s) 120, 133
AoxI GGCC 1 cut(s) 106
ApaLI GTGCAC 1 cut(s) 756
ApeKI GCWGC 4 cut(s) 65, 236, 494, 695
AspLEI GCGC 3 cut(s) 218, 296, 731
AsuC2I CCSGG 2 cut(s) 130, 427
AsuHPI GGTGA 2 cut(s) 236, 806
BaeGI GKGCMC 1 cut(s) 760
BamHI GGATCC 1 cut(s) 125
BanI GGYRCC 3 cut(s) 422, 545, 581
Bbv12I GWGCWC 2 cut(s) 513, 760
BbvI GCAGC 4 cut(s) 77, 223, 481, 682
BceAI ACGGC 1 cut(s) 529
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciVI GTATCC 1 cut(s) 105
BcnI CCSGG 2 cut(s) 130, 427
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 2 cut(s) 63, 219
BfoI RGCGCY 3 cut(s) 219, 297, 732
BfuI GTATCC 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 6 cut(s) 66, 237, 343, 495, 571, 696
BlsI GCNGC 6 cut(s) 67, 238, 344, 496, 572, 697
Bme1390I CCNGG 2 cut(s) 130, 427
BmiI GGNNCC 5 cut(s) 127, 424, 547, 583, 685
BmrFI CCNGG 2 cut(s) 130, 427
BpmI CTGGAG 4 cut(s) 171, 381, 654, 696
BpuMI CCSGG 2 cut(s) 130, 427
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 2 cut(s) 548, 698
Bse1I ACTGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 7 cut(s) 186, 195, 333, 519, 651, 705, 792
BseSI GKGCMC 1 cut(s) 760
BseXI GCAGC 4 cut(s) 77, 223, 481, 682
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 3 cut(s) 422, 545, 581
BsiHKAI GWGCWC 2 cut(s) 513, 760
BsiSI CCGG 6 cut(s) 129, 426, 549, 585, 687, 699
BslI CCNNNNNNNGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 513, 760
Bsp143I GATC 1 cut(s) 125
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 5 cut(s) 127, 424, 547, 583, 685
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 2 cut(s) 120, 133
BspT107I GGYRCC 3 cut(s) 422, 545, 581
BsrBI CCGCTC 1 cut(s) 792
BsrFI RCCGGY 2 cut(s) 548, 698
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 2 cut(s) 548, 698
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 611, 629
BstC8I GCNNGC 4 cut(s) 241, 379, 568, 575
BstDSI CCRYGG 1 cut(s) 109
BstH2I RGCGCY 3 cut(s) 219, 297, 732
BstHHI GCGC 3 cut(s) 218, 296, 731
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstMWI GCNNNNNNNGC 9 cut(s) 114, 155, 249, 374, 383, 446, 638, 692, 735
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 128, 425
BstSFI CTRYAG 2 cut(s) 63, 219
BstSLI GKGCMC 1 cut(s) 760
BstV1I GCAGC 4 cut(s) 77, 223, 481, 682
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 109
BtsI GCAGTG 2 cut(s) 205, 388
BtsIMutI CAGTG 3 cut(s) 205, 357, 388
Cac8I GCNNGC 4 cut(s) 241, 379, 568, 575
CfoI GCGC 3 cut(s) 218, 296, 731
Cfr10I RCCGGY 2 cut(s) 548, 698
CviAII CATG 6 cut(s) 110, 230, 305, 578, 761, 809
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 106
EciI GGCGGA 3 cut(s) 183, 633, 738
Eco130I CCWWGG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 113, 233, 308, 581, 764, 812
FatI CATG 6 cut(s) 109, 229, 304, 577, 760, 808
FauI CCCGC 4 cut(s) 110, 301, 479, 779
FauNDI CATATG 4 cut(s) 56, 352, 499, 772
Fnu4HI GCNGC 6 cut(s) 66, 237, 343, 495, 571, 696
Fsp4HI GCNGC 6 cut(s) 66, 237, 343, 495, 571, 696
FspBI CTAG 1 cut(s) 642
GlaI GCGC 3 cut(s) 217, 295, 730
GluI GCNGC 6 cut(s) 66, 237, 343, 495, 571, 696
GsuI CTGGAG 4 cut(s) 171, 381, 654, 696
HaeII RGCGCY 3 cut(s) 219, 297, 732
HaeIII GGCC 1 cut(s) 108
HapII CCGG 6 cut(s) 129, 426, 549, 585, 687, 699
HhaI GCGC 3 cut(s) 218, 296, 731
Hin1II CATG 6 cut(s) 113, 233, 308, 581, 764, 812
Hin6I GCGC 3 cut(s) 216, 294, 729
HinP1I GCGC 3 cut(s) 216, 294, 729
HinfI GANTC 1 cut(s) 22
HpaII CCGG 6 cut(s) 129, 426, 549, 585, 687, 699
HphI GGTGA 2 cut(s) 236, 806
Hpy166II GTNNAC 3 cut(s) 227, 302, 758
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 227, 302, 758
HpyAV CCTTC 4 cut(s) 263, 383, 530, 662
HpyCH4III ACNGT 2 cut(s) 611, 629
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 5 cut(s) 65, 350, 497, 758, 770
HpyF10VI GCNNNNNNNGC 9 cut(s) 114, 155, 249, 374, 383, 446, 638, 692, 735
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 6 cut(s) 113, 233, 308, 581, 764, 812
HspAI GCGC 3 cut(s) 216, 294, 729
Kzo9I GATC 1 cut(s) 125
LmnI GCTCC 8 cut(s) 437, 491, 593, 638, 671, 683, 692, 789
Lsp1109I GCAGC 4 cut(s) 77, 223, 481, 682
MaeI CTAG 1 cut(s) 642
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 605, 623
MalI GATC 1 cut(s) 127
MbiI CCGCTC 1 cut(s) 792
MboI GATC 1 cut(s) 125
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 513, 760
MlyI GAGTC 1 cut(s) 31
MslI CAYNNNNRTG 3 cut(s) 309, 612, 765
MspI CCGG 6 cut(s) 129, 426, 549, 585, 687, 699
MspR9I CCNGG 2 cut(s) 130, 427
MwoI GCNNNNNNNGC 9 cut(s) 114, 155, 249, 374, 383, 446, 638, 692, 735
NciI CCSGG 2 cut(s) 130, 427
NcoI CCATGG 1 cut(s) 109
NdeI CATATG 4 cut(s) 56, 352, 499, 772
NdeII GATC 1 cut(s) 125
NlaIII CATG 6 cut(s) 113, 233, 308, 581, 764, 812
NlaIV GGNNCC 5 cut(s) 127, 424, 547, 583, 685
NmuCI GTSAC 1 cut(s) 605
NspI RCATGY 1 cut(s) 308
OliI CACNNNNGTG 1 cut(s) 612
PkrI GCNGC 6 cut(s) 67, 238, 344, 496, 572, 697
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 5 cut(s) 127, 424, 547, 583, 685
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 125
RseI CAYNNNNRTG 3 cut(s) 309, 612, 765
SatI GCNGC 6 cut(s) 66, 237, 343, 495, 571, 696
Sau3AI GATC 1 cut(s) 125
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 130, 427
SduI GDGCHC 2 cut(s) 513, 760
SfcI CTRYAG 2 cut(s) 63, 219
SmiMI CAYNNNNRTG 3 cut(s) 309, 612, 765
SspMI CTAG 1 cut(s) 642
StyD4I CCNGG 2 cut(s) 128, 425
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 611, 629
TaiI ACGT 1 cut(s) 95
TauI GCSGC 2 cut(s) 345, 573
TscAI CASTG 3 cut(s) 205, 364, 388
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 4 cut(s) 65, 236, 494, 695
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 3 cut(s) 205, 364, 388
VneI GTGCAC 1 cut(s) 756
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.