Prupe.5G034900_v2.0.a1

glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
3977606 .. 3979453
1848 bp
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UTR
Exon/CDS
Intron
Prupe.5G034900.1

Sequence Viewer

Length: 1629 bp
ATGACTACTCAAAACACTCATAGTTTTGTCTTCTTTATGTTATTAGGTATAGGGATATGTTCTGCAGCCAGAACAATCCTACATTATAAAGAGCCTGCCCATGCTCCTGTTGTCAGCTATGGTGCAGGCCATGTCGTCGGTGGTGGTGGTGGATCGGAGTATAGATTTGGTGGTGCTGCAAGTTATGGTGGTGTTTGGGGATATGGTGGCGTAGGAGGTGCAGGAAGTGATGAGGATTATGGAGCGATAGGAGAACATGGTGCTCCTAGCTATGGAGGTGGTAGTGGTGGTGGAAAAGGAGGTGGTGTTGCCTACGGAGGTGCTGGTGGACATGGTGGTGGTGGTGGCGGCGGTAGTGGTGGTGTTGATGGTGGTGGGGGCACTGAAAGACATGGAAGTGGGAGTGGTGAAGGAGGTGGTGCCAGTTATGGTGTTGGTGGTGAACATGGAGTGAGTGGCGATGGTCGGGGTAATAGCGGTGGCGGTGGCTCTGGTTATGCTGGAAAACATGGCAGTGGTTACAGAGGTGGAGAAGGTGGTGGTGCCGGTGGCAGTCATGGTGCTAGTGGAAAACATGACAAAGGTTATGGAGGAGGAGGCGGACATGGTGCTGGTGCCGGAGGAGGCTATGCTGCTGGAGGAGCAAGTGGTGGAGGAGCTGAAGGAGCAAGTGGTGGAGGAGCTGGAGGTGGAGGTGGCGGACACGGTGCTAGTGGCAAACATGGCGCTGGTGCCATTGGAGGCAACGAACATGGTGGTGGTGCCGATAGCAAACATGGTGCTGGTGGCAAACATGGTGCTAGTGCCATTGGAGGCGGTGAGCATGGTGGTGGTGCCGATGGCAAACATGGTGATGGTGGCAAACATGGTGCTAGTGCCATTGGAGGCGACGAACATGGTGGTGGTGTTGATGGTAAACATGGGGCTAGTGGCAAACATGGTGCTAGTGCCATTGGAGGCGGCGAACATGATGATGGTGCCAGTGGCAAACATGGTGCTGGTGGAAAACATGGCAAAGGCTATGGTGGAGGCGGAGGACATGGTGGTAGTGCTAGAGAAGGTTATGCTGCTGGAGGAGCAAGTGGTGGAGGAGTTGGAGGTGGAGCTAGTGGTGGCTATGCAGGTGGTGCAGGGGGAGGAGGAGGTTCCGGTGGTGGCAGCAGCTATGGAGGAGCTCATGGAGGTGCATATGGAGGACGAGGTGGTGGTGAGGGCGGAGGCCATGGTGCTAGTAGCAAACATGGCGAAGGCTATGGAGGAGGCAGCGGACATGGTGGTGGTGCTGGAGGAGGCGGCGGACATGGTGCTAGTACCATTGGAGGTAACAAACATGGTGGTGGTGCCGATGGCAAACTTGGTGGTGGTGCCGATGGCAAACTTGGTGCTGGTGCCATTGGAGGCGGCGAAAATGGTGGTGTAGCCGGAGGAGGCGGCGGACATGGTGGTGGTGCTGTTGGAAGTTATGCTACTGGAGGAGCAAGTGGTGGTGGGGTTGGAGGTGGAGCTAGTGGTGGCTATGCAGGTGGTGTAGCCGGAGGCGTTTTTGGTGGTGGCAGCGGCTATGAAGGAGCTTATGGAGCTGCATATTGGGGACAAGGTGGTGGTGAGAGCGGTGGTTATGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

543

Amino Acids

46.13

Weight (kDa)

6.56

Isoelectric Point (pI)

21.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016405)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AarI CACCTGC 2 cut(s) 1112, 1511
Acc36I ACCTGC 2 cut(s) 1112, 1511
AccBSI CCGCTC 1 cut(s) 1611
AclWI GGATC 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 681
AfaI GTAC 1 cut(s) 1312
AfiI CCNNNNNNNGG 1 cut(s) 272
Alw21I GWGCWC 2 cut(s) 265, 1177
AlwI GGATC 1 cut(s) 160
AoxI GGCC 2 cut(s) 127, 1219
ApeKI GCWGC 9 cut(s) 65, 176, 632, 1067, 1158, 1161, 1263, 1554, 1580
AspLEI GCGC 1 cut(s) 728
AsuHPI GGTGA 6 cut(s) 419, 452, 830, 863, 1220, 1616
BaeGI GKGCMC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 1177
BarI GAAGNNNNNNTAC 2 cut(s) 1450, 1482
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 265, 1177
BbvI GCAGC 9 cut(s) 77, 163, 619, 1054, 1170, 1173, 1275, 1566, 1567
BccI CCATC 8 cut(s) 362, 455, 833, 848, 905, 968, 1340, 1364
BfmI CTRYAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 729
BfuAI ACCTGC 2 cut(s) 1112, 1511
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 5 cut(s) 657, 705, 1092, 1305, 1491
BsaJI CCNNGG 1 cut(s) 1222
BsaWI WCCGGW 1 cut(s) 1148
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 3 cut(s) 423, 981, 1474
BseDI CCNNGG 1 cut(s) 1222
BseLI CCNNNNNNNGG 1 cut(s) 272
BseNI ACTGG 3 cut(s) 423, 981, 1474
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 9 cut(s) 77, 163, 619, 1054, 1170, 1173, 1275, 1566, 1567
BsgI GTGCAG 3 cut(s) 144, 240, 1149
BshFI GGCC 2 cut(s) 129, 1221
BsiHKAI GWGCWC 2 cut(s) 265, 1177
BsiSI CCGG 5 cut(s) 546, 618, 1149, 1422, 1533
BslFI GGGAC 1 cut(s) 1605
BslI CCNNNNNNNGG 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 1605
BsnI GGCC 2 cut(s) 129, 1221
Bsp1286I GDGCHC 3 cut(s) 265, 383, 1177
Bsp143I GATC 1 cut(s) 152
Bsp19I CCATGG 1 cut(s) 1222
BspANI GGCC 2 cut(s) 129, 1221
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 2 cut(s) 1112, 1511
BspPI GGATC 1 cut(s) 160
BsrBI CCGCTC 1 cut(s) 1611
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 3 cut(s) 423, 981, 1474
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 1222
BssMI GATC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 1222
Bst4CI ACNGT 1 cut(s) 707
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstC8I GCNNGC 2 cut(s) 96, 127
BstDSI CCRYGG 1 cut(s) 1222
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 7 cut(s) 641, 665, 723, 1076, 1127, 1242, 1577
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 383
BstV1I GCAGC 9 cut(s) 77, 163, 619, 1054, 1170, 1173, 1275, 1566, 1567
BstV2I GAAGAC 1 cut(s) 22
BsuRI GGCC 2 cut(s) 129, 1221
BtgI CCRYGG 1 cut(s) 1222
BtgZI GCGATG 1 cut(s) 474
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 3 cut(s) 381, 520, 988
BveI ACCTGC 2 cut(s) 1112, 1511
Cac8I GCNNGC 2 cut(s) 96, 127
CfoI GCGC 1 cut(s) 728
Cfr10I RCCGGY 1 cut(s) 545
Csp6I GTAC 1 cut(s) 1311
CspCI CAANNNNNGTGG 4 cut(s) 1315, 1339, 1350, 1374
CviQI GTAC 1 cut(s) 1311
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
EciI GGCGGA 6 cut(s) 615, 714, 1047, 1230, 1311, 1449
Ecl136II GAGCTC 1 cut(s) 1175
Eco130I CCWWGG 1 cut(s) 1222
Eco24I GRGCYC 1 cut(s) 1177
Eco53kI GAGCTC 1 cut(s) 1175
Eco57I CTGAAG 1 cut(s) 681
EcoICRI GAGCTC 1 cut(s) 1175
EcoT14I CCWWGG 1 cut(s) 1222
EcoT38I GRGCYC 1 cut(s) 1177
ErhI CCWWGG 1 cut(s) 1222
FaqI GGGAC 1 cut(s) 1605
FauNDI CATATG 1 cut(s) 1189
FriOI GRGCYC 1 cut(s) 1177
GlaI GCGC 1 cut(s) 727
GsuI CTGGAG 5 cut(s) 657, 705, 1092, 1305, 1491
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 2 cut(s) 129, 1221
HapII CCGG 5 cut(s) 546, 618, 1149, 1422, 1533
HhaI GCGC 1 cut(s) 728
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HpaII CCGG 5 cut(s) 546, 618, 1149, 1422, 1533
HphI GGTGA 6 cut(s) 419, 452, 830, 863, 1220, 1616
Hpy166II GTNNAC 3 cut(s) 329, 443, 917
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 3 cut(s) 329, 443, 917
Hpy99I CGWCG 2 cut(s) 140, 893
HpyAV CCTTC 6 cut(s) 404, 527, 656, 1052, 1241, 1559
HpyCH4III ACNGT 1 cut(s) 707
HpyCH4V TGCA 9 cut(s) 65, 125, 179, 221, 1121, 1130, 1187, 1520, 1583
HpyF10VI GCNNNNNNNGC 7 cut(s) 641, 665, 723, 1076, 1127, 1242, 1577
HspAI GCGC 1 cut(s) 726
Kzo9I GATC 1 cut(s) 152
Lsp1109I GCAGC 9 cut(s) 77, 163, 619, 1054, 1170, 1173, 1275, 1566, 1567
MaeIII GTNAC 2 cut(s) 518, 1322
MalI GATC 1 cut(s) 154
MbiI CCGCTC 1 cut(s) 1611
MboI GATC 1 cut(s) 152
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 3 cut(s) 265, 383, 1177
MmeI TCCRAC 3 cut(s) 1075, 1435, 1474
MspA1I CMGCKG 2 cut(s) 1266, 1557
MspI CCGG 5 cut(s) 546, 618, 1149, 1422, 1533
MwoI GCNNNNNNNGC 7 cut(s) 641, 665, 723, 1076, 1127, 1242, 1577
NcoI CCATGG 1 cut(s) 1222
NdeI CATATG 1 cut(s) 1189
NdeII GATC 1 cut(s) 152
PaqCI CACCTGC 2 cut(s) 1112, 1511
PsiI TTATAA 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 1177
PstI CTGCAG 1 cut(s) 67
RsaI GTAC 1 cut(s) 1312
RsaNI GTAC 1 cut(s) 1311
SacI GAGCTC 1 cut(s) 1177
Sau3AI GATC 1 cut(s) 152
SduI GDGCHC 3 cut(s) 265, 383, 1177
SfcI CTRYAG 1 cut(s) 63
SstI GAGCTC 1 cut(s) 1177
StyI CCWWGG 1 cut(s) 1222
TaaI ACNGT 1 cut(s) 707
TauI GCSGC 6 cut(s) 351, 963, 1296, 1404, 1434, 1560
TscAI CASTG 3 cut(s) 388, 520, 988
TseI GCWGC 9 cut(s) 65, 176, 632, 1067, 1158, 1161, 1263, 1554, 1580
TspDTI ATGAA 1 cut(s) 1578
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 3 cut(s) 388, 520, 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.