Rroxscaffold_3G00248920

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016405
Physical Location & Seq
Forward (+)
42427071 .. 42427880
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248920.1

Sequence Viewer

Length: 810 bp
ATGGCTTCTCAAAGAGTTCAGAGTCTTGTTTTCTTCGTGCTATTAGGTCTAGGCATATGTTCTGCAGCAAGAACACTCCTGACTTATGAAACGTATCCTGCTATCGGCCATGGTGGCGGGGGTGGATCCGGGTATGGAGGTGGTGGTGCTGGAGGTGCTGGTGGTGGCGGAGGAGGTGGAGGCAGTGGAGGTGGTTATGGCGCTGTAGGTGAACATGGTGCTGCTGGCTATGGAGGCGGTAGTGGTGGTGGAGAAGGCGGTGGTGTTGCGTATGGAGGAGCTGGTGGACATGCGGGTGGTGGAGGAGGTGGCGGTGGAAGTGGTGGTGGCGGTGCATATGGCACTGGAGGGGCATATGGTGCTGGCGGTGCGGGAGGTTATGGAAGCGGTGGTGGTGAAGGAGGTGGTGCCGGGTATGGTGGAGCTGGTGGTGCTGGTGGAGGTGGTGGTGGTGGTTCTGGTGGTGGCGGGGGAGCTGCATATGGAGGAGAGCACGGCATTGGTTATGGTGGTGGAGAAGGGGGTGGTGCCGGTGGAGGCTATGGTGCTGGCGGCGAGCATGGTGCCGGATATGGAGGTGGTGGGGGTCACGGTGGTGGCGGAGGTTACGGTGCTGGAGGAGCTAGTGGAGGTGGATATGGAGGTGGCGGAGGAGCTGGAGGAGGAGCCGGAGGAGCTGCCGGTGGGTATGCTGGTGGTGGGGGCGGAGGCGCTGGAAGCGGTGGTGGTGGTGGTGGTGCACATGGAGGTGCGTATGGAGGAGGTGGCGGGAGCGGTGAGGGTGGTGGTCATGGTGGTTATATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

21.1

Weight (kDa)

5.63

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016405)

Species Orthologous Gene IDs
malus_domestica MD06G1035100.v1.1 MD16G1273700.v1.1
prunus_persica Prupe.5G034800_v2.0.a1 Prupe.5G034900_v2.0.a1
pyrus_communis pycom06g02900
rosa_chinensis RchiOBHm_Chr7g0209821
rosa_laevigata RLG00000003087
rosa_multiflora Rmu_co8510463.1_g000001
rosa_roxburghii Rroxscaffold_3G00248920
rosa_rugosa Rorug07G0116400
rosa_samantha Rh7AG250400 Rh7BG244500 Rh7CG266400 Rh7DG256200
rosa_wichuraiana Rw7G021220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 407, 527, 563
AccBSI CCGCTC 1 cut(s) 774
AclWI GGATC 2 cut(s) 120, 133
AcoI YGGCCR 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 104
AleI CACNNNNGTG 1 cut(s) 594
AluBI AGCT 6 cut(s) 281, 425, 476, 623, 656, 677
AluI AGCT 6 cut(s) 281, 425, 476, 623, 656, 677
Alw21I GWGCWC 2 cut(s) 495, 742
Alw44I GTGCAC 1 cut(s) 738
AlwI GGATC 2 cut(s) 120, 133
AoxI GGCC 1 cut(s) 106
ApaLI GTGCAC 1 cut(s) 738
ApeKI GCWGC 4 cut(s) 65, 221, 476, 677
AspLEI GCGC 2 cut(s) 203, 713
AsuC2I CCSGG 2 cut(s) 130, 412
AsuHPI GGTGA 3 cut(s) 221, 407, 788
BaeGI GKGCMC 1 cut(s) 742
BamHI GGATCC 1 cut(s) 125
BanI GGYRCC 3 cut(s) 407, 527, 563
Bbv12I GWGCWC 2 cut(s) 495, 742
BbvI GCAGC 4 cut(s) 77, 208, 463, 664
BceAI ACGGC 1 cut(s) 511
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciVI GTATCC 1 cut(s) 105
BcnI CCSGG 2 cut(s) 130, 412
BfaI CTAG 2 cut(s) 50, 624
BfmI CTRYAG 2 cut(s) 63, 204
BfoI RGCGCY 2 cut(s) 204, 714
BfuI GTATCC 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 5 cut(s) 66, 222, 477, 553, 678
BlsI GCNGC 5 cut(s) 67, 223, 478, 554, 679
Bme1390I CCNGG 2 cut(s) 130, 412
BmiI GGNNCC 5 cut(s) 127, 409, 529, 565, 667
BmrFI CCNGG 2 cut(s) 130, 412
BpmI CTGGAG 4 cut(s) 171, 366, 636, 678
BpuMI CCSGG 2 cut(s) 130, 412
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 2 cut(s) 530, 680
Bse1I ACTGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 4 cut(s) 77, 208, 463, 664
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 3 cut(s) 407, 527, 563
BsiHKAI GWGCWC 2 cut(s) 495, 742
BsiSI CCGG 6 cut(s) 129, 411, 531, 567, 669, 681
BslI CCNNNNNNNGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 495, 742
Bsp143I GATC 1 cut(s) 125
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 5 cut(s) 127, 409, 529, 565, 667
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 2 cut(s) 120, 133
BspT107I GGYRCC 3 cut(s) 407, 527, 563
BsrBI CCGCTC 1 cut(s) 774
BsrFI RCCGGY 2 cut(s) 530, 680
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 2 cut(s) 530, 680
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 593, 611
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 4 cut(s) 226, 364, 550, 557
BstDSI CCRYGG 1 cut(s) 109
BstH2I RGCGCY 2 cut(s) 204, 714
BstHHI GCGC 2 cut(s) 203, 713
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstMWI GCNNNNNNNGC 9 cut(s) 114, 155, 234, 359, 368, 431, 620, 674, 717
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 128, 410
BstSFI CTRYAG 2 cut(s) 63, 204
BstSLI GKGCMC 1 cut(s) 742
BstV1I GCAGC 4 cut(s) 77, 208, 463, 664
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 190, 342
Cac8I GCNNGC 4 cut(s) 226, 364, 550, 557
CfoI GCGC 2 cut(s) 203, 713
Cfr10I RCCGGY 2 cut(s) 530, 680
CviAII CATG 6 cut(s) 110, 215, 290, 560, 743, 791
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 106
EciI GGCGGA 4 cut(s) 183, 615, 663, 720
Eco130I CCWWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 113, 218, 293, 563, 746, 794
FatI CATG 6 cut(s) 109, 214, 289, 559, 742, 790
FauI CCCGC 5 cut(s) 110, 286, 364, 461, 761
FauNDI CATATG 4 cut(s) 56, 337, 355, 481
Fnu4HI GCNGC 5 cut(s) 66, 222, 477, 553, 678
Fsp4HI GCNGC 5 cut(s) 66, 222, 477, 553, 678
FspBI CTAG 2 cut(s) 50, 624
GlaI GCGC 2 cut(s) 202, 712
GluI GCNGC 5 cut(s) 66, 222, 477, 553, 678
GsuI CTGGAG 4 cut(s) 171, 366, 636, 678
HaeII RGCGCY 2 cut(s) 204, 714
HaeIII GGCC 1 cut(s) 108
HapII CCGG 6 cut(s) 129, 411, 531, 567, 669, 681
HhaI GCGC 2 cut(s) 203, 713
Hin1II CATG 6 cut(s) 113, 218, 293, 563, 746, 794
Hin6I GCGC 2 cut(s) 201, 711
HinP1I GCGC 2 cut(s) 201, 711
HinfI GANTC 1 cut(s) 22
HpaII CCGG 6 cut(s) 129, 411, 531, 567, 669, 681
HphI GGTGA 3 cut(s) 221, 407, 788
Hpy166II GTNNAC 3 cut(s) 212, 287, 740
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 212, 287, 740
HpyAV CCTTC 3 cut(s) 248, 392, 512
HpyCH4III ACNGT 2 cut(s) 593, 611
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 65, 335, 479, 740
HpyF10VI GCNNNNNNNGC 9 cut(s) 114, 155, 234, 359, 368, 431, 620, 674, 717
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 6 cut(s) 113, 218, 293, 563, 746, 794
HspAI GCGC 2 cut(s) 201, 711
Kzo9I GATC 1 cut(s) 125
LmnI GCTCC 8 cut(s) 278, 422, 473, 620, 653, 665, 674, 771
Lsp1109I GCAGC 4 cut(s) 77, 208, 463, 664
MaeI CTAG 2 cut(s) 50, 624
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 587, 605
MalI GATC 1 cut(s) 127
MbiI CCGCTC 1 cut(s) 774
MboI GATC 1 cut(s) 125
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 495, 742
MlyI GAGTC 1 cut(s) 31
MslI CAYNNNNRTG 3 cut(s) 294, 594, 747
MspI CCGG 6 cut(s) 129, 411, 531, 567, 669, 681
MspR9I CCNGG 2 cut(s) 130, 412
MwoI GCNNNNNNNGC 9 cut(s) 114, 155, 234, 359, 368, 431, 620, 674, 717
NciI CCSGG 2 cut(s) 130, 412
NcoI CCATGG 1 cut(s) 109
NdeI CATATG 4 cut(s) 56, 337, 355, 481
NdeII GATC 1 cut(s) 125
NlaIII CATG 6 cut(s) 113, 218, 293, 563, 746, 794
NlaIV GGNNCC 5 cut(s) 127, 409, 529, 565, 667
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 594
PkrI GCNGC 5 cut(s) 67, 223, 478, 554, 679
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 5 cut(s) 127, 409, 529, 565, 667
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 125
RseI CAYNNNNRTG 3 cut(s) 294, 594, 747
SatI GCNGC 5 cut(s) 66, 222, 477, 553, 678
Sau3AI GATC 1 cut(s) 125
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 130, 412
SduI GDGCHC 2 cut(s) 495, 742
SfcI CTRYAG 2 cut(s) 63, 204
SmiMI CAYNNNNRTG 3 cut(s) 294, 594, 747
SspMI CTAG 2 cut(s) 50, 624
StyD4I CCNGG 2 cut(s) 128, 410
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 593, 611
TaiI ACGT 1 cut(s) 95
TauI GCSGC 1 cut(s) 555
TscAI CASTG 2 cut(s) 190, 349
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 4 cut(s) 65, 221, 476, 677
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 2 cut(s) 190, 349
VneI GTGCAC 1 cut(s) 738
XceI RCATGY 1 cut(s) 293
XspI CTAG 2 cut(s) 50, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.