Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0016405

Physical Location & Seq

Genomic Coordinates Reverse (-)

3534436 .. 3535464

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTGCTTCAACCACCCTGTATATACCTGCCCTCTCTTCTCTTGCAGTGTACTCCATTGTTGTTCATTCAGCTGCATTATTCCAATGACTACTCAAAATGCTCGTACTTTTGTTTTCTTTGTGTTATTGGGTATGGGGATATGTTCTGCAGCTAGAACACTCCTAAATTATGAAGAGCCTGTCCACGTGCCTGCTGTCAACTATGGGGCAGGCCATGGCATTGGGGGCGGTGTTGGATCAGGGTATGGCAGCGGTGCTGGAGGTTATGGTGGCGGAGGAGGTGCAGGAAGTGGTGGTGGCTATGGAGCTGTAGGAGAGCATGGTGCTACTGGATATGGAGGTGGTAGTGGTGGTGGAGAAGGCGGTGGTGTTGCCTACGGACATGCTGGTGGACATGGTGGTGGCGGCGGTGGAGGCAGTGGTGGTGGTGGTGCATATGGTGTCGGGGGCTCAGGAGGGTATGGAAGTGGGGGTGGTGAAGGTGGTGGGGCTGGCTACGGCGCTGGTGGAGAACATGGGGCTGGTGGTGGTGGAGGAGGAGGTGCCGGTGGTGGCGGAGGATCCGGATATGCTGGAGAGCATGGCGGTGGTTATGGAGGAGGAGAAGGTGGTGGTGCAGGTGGAGGTTATGGCGCTGGTGGAGAACATGGTGGAGGATATGGCGGTGGCGGTGGCCATGGTGGTGGTGCTGGAGGAGGTTATGCTGCTGGAGGTGCAAGTGGAGGAGGATATGGGAGCGGTGGAGGAGTGGTGGTGGTGGTGGTGGAGGTTCTGGTGGCGGCAGCGGCTATGGTGGAGCGCATGGAGGAGGAGGTGGGGGTGGTGAAGGTGGTGGTCATGGTGGTTATGTTCCTTGAAATTACCTTCACTTCTTTGTCACTAAAGATTTGTATCACCTTACCTTATAAAGCTATTAATAGTAGTAAATGGGAAAACAAAATAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

28.74

Weight (kDa)

5.83

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016405)

Species	Orthologous Gene IDs
malus_domestica	MD06G1035100.v1.1 MD16G1273700.v1.1
prunus_persica	Prupe.5G034800_v2.0.a1 Prupe.5G034900_v2.0.a1
pyrus_communis	pycom06g02900
rosa_chinensis	RchiOBHm_Chr7g0209821
rosa_laevigata	RLG00000003087
rosa_multiflora	Rmu_co8510463.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248920
rosa_rugosa	Rorug07G0116400
rosa_samantha	Rh7AG250400 Rh7BG244500 Rh7CG266400 Rh7DG256200
rosa_wichuraiana	Rw7G021220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	906
AarI	CACCTGC	1 cut(s)	608
Acc36I	ACCTGC	2 cut(s)	35, 608
AccB1I	GGYRCC	1 cut(s)	542
AccBSI	CCGCTC	1 cut(s)	738
AccIII	TCCGGA	1 cut(s)	563
AclWI	GGATC	3 cut(s)	244, 555, 568
AcoI	YGGCCR	1 cut(s)	673
AcvI	CACGTG	1 cut(s)	187
AfaI	GTAC	2 cut(s)	51, 106
AgsI	TTSAA	2 cut(s)	10, 857
AluBI	AGCT	4 cut(s)	72, 152, 308, 911
AluI	AGCT	4 cut(s)	72, 152, 308, 911
AlwI	GGATC	3 cut(s)	244, 555, 568
Aor13HI	TCCGGA	1 cut(s)	563
AoxI	GGCC	2 cut(s)	211, 673
ApeKI	GCWGC	5 cut(s)	72, 149, 249, 704, 782
AseI	ATTAAT	1 cut(s)	915
AspLEI	GCGC	3 cut(s)	503, 635, 801
AsuHPI	GGTGA	3 cut(s)	488, 835, 886
BalI	TGGCCA	1 cut(s)	675
BamHI	GGATCC	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	452
BbrPI	CACGTG	1 cut(s)	187
BbvI	GCAGC	5 cut(s)	59, 161, 261, 691, 794
BceAI	ACGGC	1 cut(s)	514
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	2 cut(s)	147, 309
BfoI	RGCGCY	2 cut(s)	504, 636
BfuAI	ACCTGC	2 cut(s)	35, 608
BisI	GCNGC	8 cut(s)	73, 150, 250, 406, 705, 780, 783, 786
BlsI	GCNGC	8 cut(s)	74, 151, 251, 407, 706, 781, 784, 787
BmiI	GGNNCC	2 cut(s)	544, 562
BpmI	CTGGAG	4 cut(s)	279, 594, 711, 729
Bpu10I	CCTNAGC	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	890
BsaJI	CCNNGG	2 cut(s)	214, 676
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	4 cut(s)	735, 738, 765, 768
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	334
Bse8I	GATNNNNATC	1 cut(s)	890
BseAI	TCCGGA	1 cut(s)	563
BseDI	CCNNGG	2 cut(s)	214, 676
BseJI	GATNNNNATC	1 cut(s)	890
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	5 cut(s)	59, 161, 261, 691, 794
BsgI	GTGCAG	2 cut(s)	303, 636
BshFI	GGCC	2 cut(s)	213, 675
BshNI	GGYRCC	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	546, 564
BsnI	GGCC	2 cut(s)	213, 675
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp13I	TCCGGA	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	236, 560
Bsp19I	CCATGG	2 cut(s)	214, 676
BspANI	GGCC	2 cut(s)	213, 675
BspCNI	CTCAG	1 cut(s)	464
BspEI	TCCGGA	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	544, 562
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	2 cut(s)	35, 608
BspPI	GGATC	3 cut(s)	244, 555, 568
BspQI	GCTCTTC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	542
BsrBI	CCGCTC	1 cut(s)	738
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	2 cut(s)	214, 676
BssMI	GATC	2 cut(s)	236, 560
BssT1I	CCWWGG	2 cut(s)	214, 676
Bst6I	CTCTTC	2 cut(s)	41, 168
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	192, 211, 493
BstDEI	CTNAG	1 cut(s)	451
BstDSI	CCRYGG	2 cut(s)	214, 676
BstH2I	RGCGCY	2 cut(s)	504, 636
BstHHI	GCGC	3 cut(s)	503, 635, 801
BstKTI	GATC	2 cut(s)	239, 563
BstMBI	GATC	2 cut(s)	236, 560
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 414, 713, 785
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	2 cut(s)	147, 309
BstV1I	GCAGC	5 cut(s)	59, 161, 261, 691, 794
BstX2I	RGATCY	1 cut(s)	560
BstXI	CCANNNNNNTGG	2 cut(s)	221, 683
BstYI	RGATCY	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	213, 675
BtgI	CCRYGG	2 cut(s)	214, 676
BtsI	GCAGTG	2 cut(s)	52, 424
BtsIMutI	CAGTG	2 cut(s)	52, 424
BveI	ACCTGC	2 cut(s)	35, 608
Cac8I	GCNNGC	3 cut(s)	192, 211, 493
CfoI	GCGC	3 cut(s)	503, 635, 801
Cfr10I	RCCGGY	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	50, 105
CviQI	GTAC	2 cut(s)	50, 105
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	2 cut(s)	238, 562
DpnII	GATC	2 cut(s)	236, 560
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	2 cut(s)	41, 168
EarI	CTCTTC	2 cut(s)	41, 168
EciI	GGCGGA	2 cut(s)	288, 570
Eco130I	CCWWGG	2 cut(s)	214, 676
Eco24I	GRGCYC	1 cut(s)	452
Eco72I	CACGTG	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	214, 676
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	2 cut(s)	214, 676
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	8 cut(s)	73, 150, 250, 406, 705, 780, 783, 786
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	8 cut(s)	73, 150, 250, 406, 705, 780, 783, 786
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	3 cut(s)	502, 634, 800
GluI	GCNGC	8 cut(s)	73, 150, 250, 406, 705, 780, 783, 786
GsuI	CTGGAG	4 cut(s)	279, 594, 711, 729
HaeII	RGCGCY	2 cut(s)	504, 636
HaeIII	GGCC	2 cut(s)	213, 675
HapII	CCGG	2 cut(s)	546, 564
HhaI	GCGC	3 cut(s)	503, 635, 801
Hin6I	GCGC	3 cut(s)	501, 633, 799
HinP1I	GCGC	3 cut(s)	501, 633, 799
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	546, 564
HphI	GGTGA	3 cut(s)	488, 835, 886
Hpy166II	GTNNAC	4 cut(s)	50, 184, 199, 392
Hpy188III	TCNNGA	2 cut(s)	453, 564
Hpy8I	GTNNAC	4 cut(s)	50, 184, 199, 392
HpyAV	CCTTC	5 cut(s)	353, 473, 599, 820, 874
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	7 cut(s)	45, 75, 149, 284, 434, 617, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 414, 713, 785
HpyF3I	CTNAG	1 cut(s)	451
HpySE526I	ACGT	1 cut(s)	186
HspAI	GCGC	3 cut(s)	501, 633, 799
Kpn2I	TCCGGA	1 cut(s)	563
Kzo9I	GATC	2 cut(s)	236, 560
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	305, 735, 796
Lsp1109I	GCAGC	5 cut(s)	59, 161, 261, 691, 794
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	876
MalI	GATC	2 cut(s)	238, 562
MbiI	CCGCTC	1 cut(s)	738
MboI	GATC	2 cut(s)	236, 560
MboII	GAAGA	2 cut(s)	28, 185
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	452
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	2 cut(s)	166, 858
MluNI	TGGCCA	1 cut(s)	675
MmeI	TCCRAC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	675
MroI	TCCGGA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	1 cut(s)	915
MslI	CAYNNNNRTG	4 cut(s)	387, 399, 585, 681
Msp20I	TGGCCA	1 cut(s)	675
MspA1I	CMGCKG	3 cut(s)	72, 252, 785
MspI	CCGG	2 cut(s)	546, 564
MwoI	GCNNNNNNNGC	4 cut(s)	225, 414, 713, 785
NcoI	CCATGG	2 cut(s)	214, 676
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	2 cut(s)	236, 560
NlaIV	GGNNCC	2 cut(s)	544, 562
NmuCI	GTSAC	1 cut(s)	876
NspI	RCATGY	1 cut(s)	386
PaqCI	CACCTGC	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	168
PkrI	GCNGC	8 cut(s)	74, 151, 251, 407, 706, 781, 784, 787
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	915
PsiI	TTATAA	1 cut(s)	906
PspCI	CACGTG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	544, 562
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	72
RsaI	GTAC	2 cut(s)	51, 106
RsaNI	GTAC	2 cut(s)	50, 105
RseI	CAYNNNNRTG	4 cut(s)	387, 399, 585, 681
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	915
SatI	GCNGC	8 cut(s)	73, 150, 250, 406, 705, 780, 783, 786
Sau3AI	GATC	2 cut(s)	236, 560
SduI	GDGCHC	1 cut(s)	452
SfcI	CTRYAG	2 cut(s)	147, 309
SmiMI	CAYNNNNRTG	4 cut(s)	387, 399, 585, 681
Sse9I	AATT	2 cut(s)	166, 858
SspMI	CTAG	1 cut(s)	153
StyI	CCWWGG	2 cut(s)	214, 676
TaiI	ACGT	1 cut(s)	189
TasI	AATT	2 cut(s)	166, 858
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	3 cut(s)	408, 782, 788
Tru1I	TTAA	1 cut(s)	915
Tru9I	TTAA	1 cut(s)	915
TscAI	CASTG	2 cut(s)	52, 424
TseFI	GTSAC	1 cut(s)	876
TseI	GCWGC	5 cut(s)	72, 149, 249, 704, 782
Tsp45I	GTSAC	1 cut(s)	876
TspDTI	ATGAA	2 cut(s)	54, 186
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	52, 424
VspI	ATTAAT	1 cut(s)	915
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.