Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005640

Physical Location & Seq

Genomic Coordinates Reverse (-)

8941577 .. 8942447

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1105400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTGTCTGTACCTAACTTCTGGCAAAAGGACTAGACTTGCATTCTTGAGAGGTTCCCTCAAGGTCTGGATTCTACTAAAGGTGGCTAGAGGTTTCACTAGAGGTGCATTTGAGGTGAAGCCTTTTTCAGATGAAGAGTCGCATAAAGATCCGCCTCCAGAAACGATTTCAATGTTACGATCTTCGGAAGGCAGGGCTAACAATTCTGTCCGAAAGGTGACCTTGTTTCCGGTCATAAAGTGGAAGACCGGGCGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 RNase_E_G

Protein Analysis

87

Amino Acids

9.82

Weight (kDa)

10.76

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270
fragaria_vesca	FvH4_6g40410
malus_domestica	MD09G1130200.v1.1 MD17G1105400.v1.1
prunus_persica	Prupe.3G194900_v2.0.a1 Prupe.3G194900_v2.0.a1
pyrus_communis	pycom09g05330 pycom17g10950 pycom17g10970
rosa_chinensis	RchiOBHm_Chr2g0155641
rosa_laevigata	RLG00000020850
rosa_multiflora	Rmu_ssc0000430.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093600
rosa_rugosa	Rorug02G0448700 Rorug02G0448700
rosa_samantha	Rh2AG514800 Rh2BG525700 Rh2CG499700 Rh2DG534600
rosa_wichuraiana	Rw2G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	171
AlwI	GGATC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	127, 229
BbsI	GAAGAC	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	250
BfaI	CTAG	3 cut(s)	33, 87, 99
Bme1390I	CCNGG	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	44, 67
BpuMI	CCSGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	230, 249
BsmI	GAATGC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	148, 179
BspACI	CCGC	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	143
BssMI	GATC	2 cut(s)	148, 179
Bst6I	CTCTTC	1 cut(s)	129
BstEII	GGTNACC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	151, 182
BstMBI	GATC	2 cut(s)	148, 179
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	3 cut(s)	86, 121, 197
CviKI_1	RGCY	3 cut(s)	86, 121, 197
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	2 cut(s)	150, 181
DpnII	GATC	2 cut(s)	148, 179
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	217
FaiI	YATR	2 cut(s)	144, 236
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FspBI	CTAG	3 cut(s)	33, 87, 99
GsuI	CTGGAG	1 cut(s)	141
HapII	CCGG	2 cut(s)	230, 249
HinfI	GANTC	2 cut(s)	70, 137
HpaII	CCGG	2 cut(s)	230, 249
HphI	GGTGA	2 cut(s)	127, 229
Hpy188I	TCNGA	3 cut(s)	130, 187, 212
Hpy188III	TCNNGA	3 cut(s)	46, 67, 158
HpyAV	CCTTC	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	41, 107
Kzo9I	GATC	2 cut(s)	148, 179
LpnPI	CCDG	5 cut(s)	6, 52, 171, 178, 243
MaeI	CTAG	3 cut(s)	33, 87, 99
MaeIII	GTNAC	2 cut(s)	174, 217
MalI	GATC	2 cut(s)	150, 181
MboI	GATC	2 cut(s)	148, 179
MboII	GAAGA	3 cut(s)	146, 174, 256
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	44, 68, 83, 95, 106, 165
MspI	CCGG	2 cut(s)	230, 249
MspR9I	CCNGG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	148, 179
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
Sau3AI	GATC	2 cut(s)	148, 179
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	9 cut(s)	15, 55, 66, 84, 94, 106, 117, 219, 224
SmlI	CTYRAG	2 cut(s)	46, 59
SmoI	CTYRAG	2 cut(s)	46, 59
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	3 cut(s)	33, 87, 99
StyD4I	CCNGG	1 cut(s)	248
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	147
XspI	CTAG	3 cut(s)	33, 87, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.