Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005640

Physical Location & Seq

Genomic Coordinates Reverse (-)

8497138 .. 8497834

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10950.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAATGGTGTTGGCAGGTACGGCCTAGTGTGACGTTTATGATTAGTGAACCGTGCGCTTGCTGTCATGCCACTGGGAGAGTAGAAGCATTAGAGACCTCCACCTCCAAAATTGAACAAGAAATTTCTCGATTACTTGCGATGATGGAAGAGAGACCGGACCCGGGAAACCCCAAATCTTGGCCAAAATTTATTCCGAGAGTTGACCGTCACATGTGTGAGTACCTAACTTCTGGCAAAAGGACTAGACTTGCATTCTTGAGCGGTTCCCTCAAGGTCTGGATTCTACTAAAGATGAGAAGTCACATAAAGATCCGCCTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 RNase_E_G

Protein Analysis

109

Amino Acids

12.59

Weight (kDa)

9.36

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270
fragaria_vesca	FvH4_6g40410
malus_domestica	MD09G1130200.v1.1 MD17G1105400.v1.1
prunus_persica	Prupe.3G194900_v2.0.a1 Prupe.3G194900_v2.0.a1
pyrus_communis	pycom09g05330 pycom17g10950 pycom17g10970
rosa_chinensis	RchiOBHm_Chr2g0155641
rosa_laevigata	RLG00000020850
rosa_multiflora	Rmu_ssc0000430.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093600
rosa_rugosa	Rorug02G0448700 Rorug02G0448700
rosa_samantha	Rh2AG514800 Rh2BG525700 Rh2CG499700 Rh2DG534600
rosa_wichuraiana	Rw2G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccBSI	CCGCTC	1 cut(s)	264
AciI	CCGC	2 cut(s)	264, 316
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	123, 188
AfaI	GTAC	2 cut(s)	21, 224
AfiI	CCNNNNNNNGG	2 cut(s)	164, 180
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	89, 148
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	2 cut(s)	23, 182
ApoI	RAATTY	2 cut(s)	123, 188
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	2 cut(s)	164, 165
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	184
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	38
BcnI	CCSGG	2 cut(s)	164, 165
BcoDI	GTCTC	2 cut(s)	89, 148
BfaI	CTAG	2 cut(s)	27, 246
BfuAI	ACCTGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	164, 165
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	162, 268
BmrFI	CCNGG	2 cut(s)	164, 165
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	257, 280
BpuMI	CCSGG	2 cut(s)	164, 165
BsaI	GGTCTC	2 cut(s)	89, 148
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 180
Bse1I	ACTGG	2 cut(s)	79, 322
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	164, 180
BseNI	ACTGG	2 cut(s)	79, 322
BshFI	GGCC	2 cut(s)	25, 184
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	158, 164
BslI	CCNNNNNNNGG	2 cut(s)	164, 180
BsmAI	GTCTC	2 cut(s)	89, 148
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	25, 184
Bso31I	GGTCTC	2 cut(s)	89, 148
BsoBI	CYCGRG	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	264, 316
BspANI	GGCC	2 cut(s)	25, 184
BspLI	GGNNCC	2 cut(s)	162, 268
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	307
BspTNI	GGTCTC	2 cut(s)	89, 148
BsrBI	CCGCTC	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	79, 322
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	54, 209
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	2 cut(s)	89, 148
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	162, 163
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	25, 184
BtgZI	GCGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	61
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	160
Cfr9I	CCCGGG	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	20, 223
CviAII	CATG	2 cut(s)	68, 214
CviJI	RGCY	2 cut(s)	25, 184
CviKI_1	RGCY	2 cut(s)	25, 184
CviQI	GTAC	2 cut(s)	20, 223
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	305
Eco31I	GGTCTC	2 cut(s)	89, 148
Eco47I	GGWCC	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	163
FaeI	CATG	2 cut(s)	71, 217
FaiI	YATR	4 cut(s)	41, 69, 215, 308
FatI	CATG	2 cut(s)	67, 213
FspBI	CTAG	2 cut(s)	27, 246
GlaI	GCGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	25, 184
HapII	CCGG	2 cut(s)	158, 164
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	71, 217
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	2 cut(s)	158, 164
Hpy166II	GTNNAC	2 cut(s)	50, 205
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	3 cut(s)	129, 259, 280
Hpy8I	GTNNAC	2 cut(s)	50, 205
HpyCH4III	ACNGT	2 cut(s)	54, 209
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	71, 217
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	312
LpnPI	CCDG	6 cut(s)	2, 60, 171, 177, 219, 265
MaeI	CTAG	2 cut(s)	27, 246
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	31, 209, 302
MalI	GATC	1 cut(s)	314
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	1 cut(s)	312
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	3 cut(s)	111, 123, 188
MluNI	TGGCCA	1 cut(s)	184
MnlI	CCTC	3 cut(s)	109, 115, 281
Mox20I	TGGCCA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	184
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	2 cut(s)	158, 164
MspR9I	CCNGG	2 cut(s)	164, 165
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	2 cut(s)	164, 165
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	2 cut(s)	71, 217
NlaIV	GGNNCC	2 cut(s)	162, 268
NmuCI	GTSAC	3 cut(s)	31, 209, 302
NspI	RCATGY	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	216
PciI	ACATGT	1 cut(s)	213
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	180
PscI	ACATGT	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	162, 268
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	2 cut(s)	21, 224
RsaNI	GTAC	2 cut(s)	20, 223
RseI	CAYNNNNRTG	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	164, 165
SetI	ASST	6 cut(s)	21, 38, 101, 107, 228, 279
SinI	GGWCC	1 cut(s)	160
SmaI	CCCGGG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	259, 272
SmoI	CTYRAG	2 cut(s)	259, 272
Sse9I	AATT	3 cut(s)	111, 123, 188
SsiI	CCGC	2 cut(s)	264, 316
SspMI	CTAG	2 cut(s)	27, 246
StyD4I	CCNGG	2 cut(s)	162, 163
TaaI	ACNGT	2 cut(s)	54, 209
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	130
TasI	AATT	3 cut(s)	111, 123, 188
TfiI	GAWTC	1 cut(s)	283
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	3 cut(s)	31, 209, 302
Tsp45I	GTSAC	3 cut(s)	31, 209, 302
TspMI	CCCGGG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	2 cut(s)	123, 188
XceI	RCATGY	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	163
XspI	CTAG	2 cut(s)	27, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.