Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005640

Physical Location & Seq

Genomic Coordinates Forward (+)

74225721 .. 74233880

Gene Structure 8160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG514800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGGAGGCCGGGCGGCTCATGGACATTCCCGAACCTCATACTTGTCCTCGGCGCCACCGCACCCTCTTCTCCTCTTCCTCTTGCCTCCCTCCTTCGCTTAGCGTCAGGTTTCTATCGCCGTACATATACCATCACATACCCCTTGGAAATGTGTTCAGATTTTCTCTTTGTACAGCAAAGCAATGCTCTTTGCAAAGAGCTCCTATAAAGTCCATGGAGAAAGGCAAGTCAAATACTTCTCTTAAAGGAATGTGCAATATAGTTTGGACAATTGAGGCTGATCTGGAAGCTGGTCAGTTTTTGTACGTCACTGGGGACCTTTCAGCTCTCGGCTCCTGGGAACCAGAGAACGCTATACTAATGTCTCATACAGAACATACAAACTTATGGAAGGCTAAACTCGAGATTGCTGGTGGTGTAAATTTCAAGTATAACTATTTCATAAAGAGAGAAGTATGGCCTTCATGTGACATTATTTGGAGACCTGGACCTGAATTCTCTTTGTCAGTACCCCGACCTGTCAACGGTGGAAAACTCGTGGTGAGGGACTCATGGATGAGGACTACGATGTCTCCTATTCATCCATGGGGCTCATTGATAGAAGAGACATATTTTCCAATACAACCTTTATTCTCAGCTCCAGCTCCAGCTCCAGCTACAGATGAGGATGAGATTATGAAATACCTTAGAAGTGATATGTTAGAGTCACTGCCCGTCTTAAGTATTCCCATGGAGAAGGGAATGTTAGACTCCGATAGTGAACTTACAGCAAATTCTACACAGAAGGGCTTTATTTCTCATAGTGACATAATAGACCCATTGTTAAGTGATCTTAGGAAGGATAGTGCGTACTCTGATGGTGACCTTGCAGTGAATCCTAGTCAGACGGTTTCAATTTCTAATAGCTTCTCAACGGAAAGATATCAACCTGTTGAGGAGCCCTGGTTAGTCGAACCACCTCCCTTCTTTCTTGTATCCAAGGATATGAGGGGGTCTGATATGTCAGACAATGGCAACATAGAAGATGGCATTACAAATTTGGATGATACAGGAAACTCTTTGCCTGAAGAAAGCAATAACCTGATTCCCAGGGAACCTGTTTCTACCATTATACTGATTAACTCTTCTATATGTACTATGCAAAGGATAGCTCTACTGGAATATGGGAAACTGGTTGAGCTACTATTGGAACCTGTTAAAAGTACTGTGCAGTGTGATAGCGTTTATCTAGGGGTGGTTACAAAACTTGTCCCCCATATGGGTGGGGCATTTGTAAATATAGGGAATTCTAGACCATCTCTAATGGACATCAAACACAACAGGGAGCCTTTTATATTCCCTCCATTCCGAAGGACAAAGAAAATGGAAGCCAACAGTCATATGTTTGAAGAACACATGACTGCAGATGAAAATGAACGCATGTCACTTGATTTCGAAGTGACTGATGACATCATGGAAATTAGCTCTCAGGACGATTTTGTAAAATCAATGCACAGTGACGATGAGGAGCAAGAAATTGAGGATGCATTTGATCTCTCAGATGTTAAGGAACACATGAATGGTAGTATACTTGATTATGGCAAAGTAGAAGCTGATTATCCAGAAGGTGAAACTAGTGCCATTCCCGTTGCCATCAATGGTTCTAGCAATTCTCAAATGTCTCACCCCCAAAATAAGAAGAATGGTGCAAATACTGTCACTCATGAAAATAAGTGGGCCCGAGTTCAGAAGGGCACTAAAGTTGTTGTACAAGTTGTCAAAGAGGGGCTGGGTTCAAAAGGACCCACACTGACTGCTTATCCAAAATTAAAGAGCAGGTTCTGGATATTGATAACTCGTTGTGATAGAATTGGAATCTCCAAGAAAATCAGTGGTATTGAGCGTACACGATTGAAAGTCATTGCAAAAACTTTGCAGCCTCCAGGTTTTGGTCTGACTGTAAGGACTGTTGCTGCTGGCCATTCTTTAGAGGAACTGCAAAAAGATCTGGAAGGTTTGGTTTTAACTTGGAAGAATATCATGGAGCATGCAAAATCTGCAGCTCTTGCTGCAGATGAAGGTGTGGAAGGAGCCGTTCCTGTTATTCTGCATCGTGCAATGGGTCAGACGCTCTCAGTTGTGCAGGATTATTTTAATGAGACGGTTGAGAAAATGGTAGTTGACTCTCCAAGGACATATCATGAGGTTACCAATTACCTTCAGGAGATTGCCCCTGATCTTTGTGATCGAGTTGAGCTATACAGTAAAAGAATCCCTCTTTTTGATGAATTCAACATTGAAGAAGAGATCAACAATATGCTCAGTAAAAGGGTTCCACTTGCTAATGGAGGTTCTCTAGTGATTGAGCAAACTGAGGCATTAGTATCTGTTGATGTGAATGGGGGTCATGGGATGTTTGGTCAAGGAACCTCACAGGAGAAAGCTATTCTGGAAGTCAACCTTGCAGCTGCCAAACAGATTGCAAGGGAGTTACGACTGAGAGATATTGGGGGCATAATTGTGGTAGATTTCATTGATATGGCCGATGAATGTAAGTCAAAGTTTCTTTCTTTTGTGTGTGCAAATGTGCATGCTTCACATATGCACATATTTTTGCACATCCATGGGACTAATTGTGTACTTAGTTGCTTACTGGACGGCTTGATTTTAGCTTTCAGCTTGATTTTGTTCCAGTTTATGGTTGATATCATAATTTTTCACATTCACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 RNase_E_G

Protein Analysis

903

Amino Acids

100.76

Weight (kDa)

5.25

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_20	PF00686	86 - 173	3e-14	Starch binding domain
RNase_E_G	PF10150	603 - 846	7.8e-72	Ribonuclease E/G family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270
fragaria_vesca	FvH4_6g40410
malus_domestica	MD09G1130200.v1.1 MD17G1105400.v1.1
prunus_persica	Prupe.3G194900_v2.0.a1 Prupe.3G194900_v2.0.a1
pyrus_communis	pycom09g05330 pycom17g10950 pycom17g10970
rosa_chinensis	RchiOBHm_Chr2g0155641
rosa_laevigata	RLG00000020850
rosa_multiflora	Rmu_ssc0000430.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093600
rosa_rugosa	Rorug02G0448700 Rorug02G0448700
rosa_samantha	Rh2AG514800 Rh2BG525700 Rh2CG499700 Rh2DG534600
rosa_wichuraiana	Rw2G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	568
Acc36I	ACCTGC	1 cut(s)	1806
AccB1I	GGYRCC	1 cut(s)	51
AccB7I	CCANNNNNTGG	2 cut(s)	1928, 2677
AccI	GTMKAC	1 cut(s)	1567
AciI	CCGC	2 cut(s)	13, 58
AcoI	YGGCCR	2 cut(s)	1957, 2520
AcsI	RAATTY	6 cut(s)	421, 494, 772, 1036, 1285, 2267
AcuI	CTGAAG	2 cut(s)	1086, 2183
AcyI	GRCGYC	1 cut(s)	52
AfiI	CCNNNNNNNGG	5 cut(s)	524, 1258, 1259, 1928, 2677
AflII	CTTAAG	1 cut(s)	718
AgsI	TTSAA	7 cut(s)	427, 894, 1388, 1776, 1894, 2272, 2279
AhlI	ACTAGT	1 cut(s)	1613
AjnI	CCWGG	5 cut(s)	335, 484, 941, 1088, 1921
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	6 cut(s)	369, 475, 576, 599, 1665, 2132
AlwNI	CAGNNNCTG	1 cut(s)	1821
Ama87I	CYCGRG	2 cut(s)	401, 1719
AoxI	GGCC	5 cut(s)	6, 458, 1716, 1957, 2520
ApaI	GGGCCC	1 cut(s)	1720
ApeKI	GCWGC	6 cut(s)	1915, 1952, 2039, 2048, 2444, 2447
ApoI	RAATTY	6 cut(s)	421, 494, 772, 1036, 1285, 2267
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	5 cut(s)	316, 488, 1716, 1717, 1781
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	4 cut(s)	553, 872, 1619, 1655
AsuII	TTCGAA	1 cut(s)	1434
AvaI	CYCGRG	2 cut(s)	401, 1719
AvaII	GGWCC	3 cut(s)	316, 488, 1781
BaeGI	GKGCMC	2 cut(s)	1720, 1736
BalI	TGGCCA	1 cut(s)	1959
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	4 cut(s)	202, 593, 942, 1720
BauI	CACGAG	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	6 cut(s)	1927, 1939, 2035, 2051, 2434, 2456
BccI	CCATC	5 cut(s)	138, 851, 1019, 1303, 1640
BceAI	ACGGC	3 cut(s)	103, 2057, 2653
BciT130I	CCWGG	5 cut(s)	337, 486, 943, 1090, 1923
BciVI	GTATCC	1 cut(s)	985
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	6 cut(s)	369, 475, 576, 599, 1665, 2132
BcuI	ACTAGT	1 cut(s)	1613
BfaI	CTAG	6 cut(s)	879, 1229, 1290, 1614, 1644, 2336
BfmI	CTRYAG	4 cut(s)	657, 1401, 2037, 2049
BfoI	RGCGCY	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	718
BfuAI	ACCTGC	1 cut(s)	1806
BfuI	GTATCC	1 cut(s)	985
BglII	AGATCT	1 cut(s)	1984
BisI	GCNGC	7 cut(s)	14, 1916, 1953, 2040, 2049, 2445, 2448
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	7 cut(s)	15, 1917, 1954, 2041, 2050, 2446, 2449
BmcAI	AGTACT	1 cut(s)	1204
Bme1390I	CCNGG	6 cut(s)	10, 337, 486, 943, 1090, 1923
Bme18I	GGWCC	3 cut(s)	316, 488, 1781
BmeT110I	CYCGRG	2 cut(s)	401, 1719
BmgT120I	GGNCC	5 cut(s)	316, 488, 1716, 1717, 1781
BmrFI	CCNGG	6 cut(s)	10, 337, 486, 943, 1090, 1923
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	1513, 2098
BmuI	ACTGGG	1 cut(s)	321
BpmI	CTGGAG	4 cut(s)	624, 630, 636, 1905
Bpu1102I	GCTNAGC	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	1434
BpuMI	CCSGG	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	475
BsaXI	ACNNNNNCTCC	4 cut(s)	556, 586, 929, 959
Bsc4I	CCNNNNNNNGG	5 cut(s)	524, 1258, 1259, 1928, 2677
Bse1I	ACTGG	5 cut(s)	316, 1161, 1176, 2637, 2671
Bse3DI	GCAATG	3 cut(s)	188, 1899, 2103
BseBI	CCWGG	5 cut(s)	337, 486, 943, 1090, 1923
BseGI	GGATG	7 cut(s)	561, 580, 673, 1048, 1528, 2397, 2598
BseLI	CCNNNNNNNGG	5 cut(s)	524, 1258, 1259, 1928, 2677
BseMI	GCAATG	3 cut(s)	188, 1899, 2103
BseMII	CTCAG	7 cut(s)	648, 1481, 1551, 2127, 2314, 2343, 2468
BseNI	ACTGG	5 cut(s)	316, 1161, 1176, 2637, 2671
BseRI	GAGGAG	3 cut(s)	61, 950, 1520
BseSI	GKGCMC	2 cut(s)	1720, 1736
BseXI	GCAGC	6 cut(s)	1927, 1939, 2035, 2051, 2434, 2456
BseYI	CCCAGC	1 cut(s)	1768
BsgI	GTGCAG	2 cut(s)	1229, 2141
BshFI	GGCC	5 cut(s)	8, 460, 1718, 1959, 2522
BshNI	GGYRCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	2 cut(s)	401, 1719
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	4 cut(s)	329, 560, 1235, 2620
BslI	CCNNNNNNNGG	5 cut(s)	524, 1258, 1259, 1928, 2677
BsmAI	GTCTC	6 cut(s)	369, 475, 576, 599, 1665, 2132
BsmBI	CGTCTC	1 cut(s)	2132
BsmFI	GGGAC	4 cut(s)	329, 560, 1235, 2620
BsnI	GGCC	5 cut(s)	8, 460, 1718, 1959, 2522
Bso31I	GGTCTC	1 cut(s)	475
BsoBI	CYCGRG	2 cut(s)	401, 1719
Bsp119I	TTCGAA	1 cut(s)	1434
Bsp120I	GGGCCC	1 cut(s)	1716
Bsp1286I	GDGCHC	5 cut(s)	202, 593, 942, 1720, 1736
Bsp1407I	TGTACA	2 cut(s)	170, 1747
Bsp143I	GATC	7 cut(s)	280, 829, 1531, 1984, 2215, 2224, 2286
Bsp1720I	GCTNAGC	1 cut(s)	98
Bsp19I	CCATGG	4 cut(s)	213, 584, 729, 2602
BspACI	CCGC	2 cut(s)	13, 58
BspANI	GGCC	5 cut(s)	8, 460, 1718, 1959, 2522
BspCNI	CTCAG	7 cut(s)	647, 1480, 1550, 2126, 2313, 2344, 2469
BspHI	TCATGA	2 cut(s)	1702, 2179
BspMAI	CTGCAG	3 cut(s)	1405, 2041, 2053
BspMI	ACCTGC	1 cut(s)	1806
BspT104I	TTCGAA	1 cut(s)	1434
BspT107I	GGYRCC	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	718
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	3 cut(s)	188, 1899, 2103
BsrGI	TGTACA	2 cut(s)	170, 1747
BsrI	ACTGG	5 cut(s)	316, 1161, 1176, 2637, 2671
BssMI	GATC	7 cut(s)	280, 829, 1531, 1984, 2215, 2224, 2286
BssNAI	GTATAC	1 cut(s)	1568
BssNI	GRCGYC	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	7 cut(s)	142, 213, 584, 729, 978, 2168, 2602
Bst1107I	GTATAC	1 cut(s)	1568
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	5 cut(s)	337, 486, 943, 1090, 1923
Bst6I	CTCTTC	5 cut(s)	71, 79, 597, 1129, 2277
BstACI	GRCGYC	1 cut(s)	52
BstAFI	CTTAAG	1 cut(s)	718
BstAPI	GCANNNNNTGC	2 cut(s)	2036, 2045
BstAUI	TGTACA	2 cut(s)	170, 1747
BstBI	TTCGAA	1 cut(s)	1434
BstC8I	GCNNGC	3 cut(s)	1957, 2028, 2571
BstDSI	CCRYGG	4 cut(s)	213, 584, 729, 2602
BstEII	GGTNACC	2 cut(s)	860, 2185
BstF5I	GGATG	7 cut(s)	561, 580, 673, 1048, 1528, 2397, 2598
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	7 cut(s)	283, 832, 1534, 1987, 2218, 2227, 2289
BstMAI	GTCTC	6 cut(s)	369, 475, 576, 599, 1665, 2132
BstMBI	GATC	7 cut(s)	280, 829, 1531, 1984, 2215, 2224, 2286
BstMWI	GCNNNNNNNGC	3 cut(s)	2036, 2045, 2048
BstNI	CCWGG	5 cut(s)	337, 486, 943, 1090, 1923
BstNSI	RCATGY	3 cut(s)	1423, 2030, 2573
BstPI	GGTNACC	2 cut(s)	860, 2185
BstSCI	CCNGG	6 cut(s)	8, 335, 484, 941, 1088, 1921
BstSFI	CTRYAG	4 cut(s)	657, 1401, 2037, 2049
BstSLI	GKGCMC	2 cut(s)	1720, 1736
BstV1I	GCAGC	6 cut(s)	1927, 1939, 2035, 2051, 2434, 2456
BstX2I	RGATCY	1 cut(s)	1984
BstXI	CCANNNNNNTGG	1 cut(s)	1262
BstYI	RGATCY	1 cut(s)	1984
BstZ17I	GTATAC	1 cut(s)	1568
BsuI	GTATCC	1 cut(s)	985
BsuRI	GGCC	5 cut(s)	8, 460, 1718, 1959, 2522
BtgI	CCRYGG	4 cut(s)	213, 584, 729, 2602
BtsCI	GGATG	7 cut(s)	561, 580, 673, 1048, 1528, 2397, 2598
BtsI	GCAGTG	3 cut(s)	707, 876, 1217
BtsIMutI	CAGTG	7 cut(s)	309, 707, 876, 1217, 1501, 1787, 1876
BveI	ACCTGC	1 cut(s)	1806
Cac8I	GCNNGC	3 cut(s)	1957, 2028, 2571
CaiI	CAGNNNCTG	1 cut(s)	1821
CciI	TCATGA	2 cut(s)	1702, 2179
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	5 cut(s)	316, 488, 1716, 1717, 1781
CseI	GACGC	2 cut(s)	91, 2116
DinI	GGCGCC	1 cut(s)	53
DpnI	GATC	7 cut(s)	282, 831, 1533, 1986, 2217, 2226, 2288
DpnII	GATC	7 cut(s)	280, 829, 1531, 1984, 2215, 2224, 2286
DrdI	GACNNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	568
EaeI	YGGCCR	2 cut(s)	1957, 2520
Eam1104I	CTCTTC	5 cut(s)	71, 79, 597, 1129, 2277
EarI	CTCTTC	5 cut(s)	71, 79, 597, 1129, 2277
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	7 cut(s)	142, 213, 584, 729, 978, 2168, 2602
Eco24I	GRGCYC	4 cut(s)	202, 593, 942, 1720
Eco31I	GGTCTC	1 cut(s)	475
Eco32I	GATATC	2 cut(s)	923, 2686
Eco47I	GGWCC	3 cut(s)	316, 488, 1781
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	1086, 2183
Eco88I	CYCGRG	2 cut(s)	401, 1719
Eco91I	GGTNACC	2 cut(s)	860, 2185
EcoICRI	GAGCTC	1 cut(s)	200
EcoO109I	RGGNCCY	2 cut(s)	316, 1781
EcoO65I	GGTNACC	2 cut(s)	860, 2185
EcoRI	GAATTC	3 cut(s)	494, 1285, 2267
EcoRII	CCWGG	5 cut(s)	335, 484, 941, 1088, 1921
EcoRV	GATATC	2 cut(s)	923, 2686
EcoT14I	CCWWGG	7 cut(s)	142, 213, 584, 729, 978, 2168, 2602
EcoT22I	ATGCAT	1 cut(s)	1528
EcoT38I	GRGCYC	4 cut(s)	202, 593, 942, 1720
EgeI	GGCGCC	1 cut(s)	53
EheI	GGCGCC	1 cut(s)	53
ErhI	CCWWGG	7 cut(s)	142, 213, 584, 729, 978, 2168, 2602
Esp3I	CGTCTC	1 cut(s)	2132
FalI	AAGNNNNNCTT	2 cut(s)	2424, 2456
FaqI	GGGAC	4 cut(s)	329, 560, 1235, 2620
FauNDI	CATATG	3 cut(s)	1257, 1380, 2580
FblI	GTMKAC	1 cut(s)	1567
Fnu4HI	GCNGC	7 cut(s)	14, 1916, 1953, 2040, 2049, 2445, 2448
FokI	GGATG	7 cut(s)	567, 568, 680, 1055, 1535, 2404, 2585
FriOI	GRGCYC	4 cut(s)	202, 593, 942, 1720
Fsp4HI	GCNGC	7 cut(s)	14, 1916, 1953, 2040, 2049, 2445, 2448
FspBI	CTAG	6 cut(s)	879, 1229, 1290, 1614, 1644, 2336
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	7 cut(s)	14, 1916, 1953, 2040, 2049, 2445, 2448
GsaI	CCCAGC	1 cut(s)	1772
GsuI	CTGGAG	4 cut(s)	624, 630, 636, 1905
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	5 cut(s)	8, 460, 1718, 1959, 2522
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	2 cut(s)	91, 2116
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	3 cut(s)	523, 2161, 2437
HindII	GTYRAC	3 cut(s)	523, 2161, 2437
HinfI	GANTC	8 cut(s)	548, 704, 749, 874, 1084, 1854, 2162, 2250
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	4 cut(s)	553, 872, 1619, 1655
Hpy166II	GTNNAC	7 cut(s)	523, 761, 1568, 1886, 2161, 2437, 2618
Hpy8I	GTNNAC	7 cut(s)	523, 761, 1568, 1886, 2161, 2437, 2618
HpyCH4IV	ACGT	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	2036, 2045, 2048
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	52
HspAI	GCGC	1 cut(s)	52
KasI	GGCGCC	1 cut(s)	51
Kzo9I	GATC	7 cut(s)	280, 829, 1531, 1984, 2215, 2224, 2286
Lsp1109I	GCAGC	6 cut(s)	1927, 1939, 2035, 2051, 2434, 2456
LweI	GCATC	2 cut(s)	1513, 2098
MaeI	CTAG	6 cut(s)	879, 1229, 1290, 1614, 1644, 2336
MaeII	ACGT	1 cut(s)	306
MalI	GATC	7 cut(s)	282, 831, 1533, 1986, 2217, 2226, 2288
MboI	GATC	7 cut(s)	280, 829, 1531, 1984, 2215, 2224, 2286
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	1984
MhlI	GDGCHC	5 cut(s)	202, 593, 942, 1720, 1736
MlsI	TGGCCA	1 cut(s)	1959
MluNI	TGGCCA	1 cut(s)	1959
Mly113I	GGCGCC	1 cut(s)	52
MlyI	GAGTC	4 cut(s)	542, 713, 743, 2156
Mox20I	TGGCCA	1 cut(s)	1959
Mph1103I	ATGCAT	1 cut(s)	1528
MscI	TGGCCA	1 cut(s)	1959
MseI	TTAA	9 cut(s)	243, 719, 824, 1119, 1197, 1545, 1808, 2003, 2133
MslI	CAYNNNNRTG	5 cut(s)	1260, 1557, 2498, 2516, 2601
Msp20I	TGGCCA	1 cut(s)	1959
MspA1I	CMGCKG	1 cut(s)	2447
MspCI	CTTAAG	1 cut(s)	718
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	6 cut(s)	10, 337, 486, 943, 1090, 1923
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	5 cut(s)	337, 486, 943, 1090, 1923
MwoI	GCNNNNNNNGC	3 cut(s)	2036, 2045, 2048
NarI	GGCGCC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	4 cut(s)	213, 584, 729, 2602
NdeI	CATATG	3 cut(s)	1257, 1380, 2580
NdeII	GATC	7 cut(s)	280, 829, 1531, 1984, 2215, 2224, 2286
NmeAIII	GCCGAG	2 cut(s)	28, 309
NmuCI	GTSAC	9 cut(s)	307, 467, 705, 803, 860, 1422, 1438, 1496, 1696
NsiI	ATGCAT	1 cut(s)	1528
NspI	RCATGY	3 cut(s)	1423, 2030, 2573
NspV	TTCGAA	1 cut(s)	1434
PaeI	GCATGC	2 cut(s)	2030, 2573
PaeR7I	CTCGAG	1 cut(s)	401
PagI	TCATGA	2 cut(s)	1702, 2179
PasI	CCCWGGG	1 cut(s)	1089
PfeI	GAWTC	4 cut(s)	874, 1084, 1854, 2250
PflMI	CCANNNNNTGG	2 cut(s)	1928, 2677
PkrI	GCNGC	7 cut(s)	15, 1917, 1954, 2041, 2050, 2446, 2449
PleI	GAGTC	4 cut(s)	542, 712, 743, 2156
PluTI	GGCGCC	1 cut(s)	55
PpsI	GAGTC	4 cut(s)	542, 712, 743, 2156
PpuMI	RGGWCCY	2 cut(s)	316, 1781
Psp124BI	GAGCTC	1 cut(s)	202
Psp5II	RGGWCCY	2 cut(s)	316, 1781
Psp6I	CCWGG	5 cut(s)	335, 484, 941, 1088, 1921
PspEI	GGTNACC	2 cut(s)	860, 2185
PspFI	CCCAGC	1 cut(s)	1768
PspGI	CCWGG	5 cut(s)	335, 484, 941, 1088, 1921
PspOMI	GGGCCC	1 cut(s)	1716
PspPI	GGNCC	5 cut(s)	316, 488, 1716, 1717, 1781
PspPPI	RGGWCCY	2 cut(s)	316, 1781
PstI	CTGCAG	3 cut(s)	1405, 2041, 2053
PstNI	CAGNNNCTG	1 cut(s)	1821
PsuI	RGATCY	1 cut(s)	1984
PvuII	CAGCTG	1 cut(s)	2447
RseI	CAYNNNNRTG	5 cut(s)	1260, 1557, 2498, 2516, 2601
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	9 cut(s)	243, 719, 824, 1119, 1197, 1545, 1808, 2003, 2133
SatI	GCNGC	7 cut(s)	14, 1916, 1953, 2040, 2049, 2445, 2448
Sau3AI	GATC	7 cut(s)	280, 829, 1531, 1984, 2215, 2224, 2286
Sau96I	GGNCC	5 cut(s)	316, 488, 1716, 1717, 1781
ScaI	AGTACT	1 cut(s)	1204
SchI	GAGTC	4 cut(s)	542, 713, 743, 2156
ScrFI	CCNGG	6 cut(s)	10, 337, 486, 943, 1090, 1923
SduI	GDGCHC	5 cut(s)	202, 593, 942, 1720, 1736
SfaNI	GCATC	2 cut(s)	1513, 2098
SfcI	CTRYAG	4 cut(s)	657, 1401, 2037, 2049
SfoI	GGCGCC	1 cut(s)	53
Sfr274I	CTCGAG	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	1434
SinI	GGWCC	3 cut(s)	316, 488, 1781
SlaI	CTCGAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	5 cut(s)	1260, 1557, 2498, 2516, 2601
SmlI	CTYRAG	2 cut(s)	401, 718
SmoI	CTYRAG	2 cut(s)	401, 718
SpeI	ACTAGT	1 cut(s)	1613
SphI	GCATGC	2 cut(s)	2030, 2573
SsiI	CCGC	2 cut(s)	13, 58
SspDI	GGCGCC	1 cut(s)	51
SspMI	CTAG	6 cut(s)	879, 1229, 1290, 1614, 1644, 2336
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	6 cut(s)	8, 335, 484, 941, 1088, 1921
StyI	CCWWGG	7 cut(s)	142, 213, 584, 729, 978, 2168, 2602
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	402, 951, 1434, 2227
TatI	WGTACW	5 cut(s)	170, 1133, 1202, 1747, 2617
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	4 cut(s)	874, 1084, 1854, 2250
Tru1I	TTAA	9 cut(s)	243, 719, 824, 1119, 1197, 1545, 1808, 2003, 2133
Tru9I	TTAA	9 cut(s)	243, 719, 824, 1119, 1197, 1545, 1808, 2003, 2133
TscAI	CASTG	7 cut(s)	316, 714, 876, 1217, 1501, 1794, 1876
TseFI	GTSAC	9 cut(s)	307, 467, 705, 803, 860, 1422, 1438, 1496, 1696
TseI	GCWGC	6 cut(s)	1915, 1952, 2039, 2048, 2444, 2447
Tsp45I	GTSAC	9 cut(s)	307, 467, 705, 803, 860, 1422, 1438, 1496, 1696
TspGWI	ACGGA	1 cut(s)	929
TspRI	CASTG	7 cut(s)	316, 714, 876, 1217, 1501, 1794, 1876
Van91I	CCANNNNNTGG	2 cut(s)	1928, 2677
Vha464I	CTTAAG	1 cut(s)	718
VpaK11BI	GGWCC	3 cut(s)	316, 488, 1781
XapI	RAATTY	6 cut(s)	421, 494, 772, 1036, 1285, 2267
XbaI	TCTAGA	1 cut(s)	1289
XceI	RCATGY	3 cut(s)	1423, 2030, 2573
XhoI	CTCGAG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	1567
XspI	CTAG	6 cut(s)	879, 1229, 1290, 1614, 1644, 2336
ZrmI	AGTACT	1 cut(s)	1204
Zsp2I	ATGCAT	1 cut(s)	1528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.