Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005640

Physical Location & Seq

Genomic Coordinates Reverse (-)

14935611 .. 14944269

Gene Structure 8659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGTGCAATATAGTTTGGACAATCGAGGCTGATCTGGAAGCTGGTCAGTTTTTGTACGTCACTGGGGACCTTTCAGCTCTCGGCTCCTGGGAACCAGAGAACGCTATACTAATGTCTCATACAGAACATGCAAACTTATGGAAGGCTGAACTCGAGATTGCTGGTGGTGTAAATTTCAAGTATAACTATTTCATAAAGAGAGAAGTATGGCCTTCATGTGACATTATTTGGAGACCTGGACCTGAATTCTCTTTGTCAGTACCCCGACCTGTCAACGGTGGAAAACTCGCGGTGAGGGACTCATGGATGAGGACTACGATGTCTCCTATTCAACCATGGGGCTCATTGATAGAAGAGACATATTTTCCAATGCAACCTTTGTTCTCAGCTCCAGCTCCAGCTACAGATGAGGATGAGATTATGAAATACCTTAGAAGTGATATGTTAGAGTCACTGCCCGTCTTAAGTATTCCCATGGAGAAGGGAATGTTAGACTCTGATAGTGAACTTACAGCAAATTCTACACAGAAGGGCTTTATTTCTCATAGTGACATAATAGACCCATTGTTAAGTGATCTTAGGAAGGATAGTGCTTACTCTGATGGTGACCTTGCAGTGAATGCTAGTCAGATGGTTTCAATTTCTAATAGCTTCTCAACGGAAAGATATCAACCTGTTGAGGAGCCCTGGTTAGTTGAACCACCTCCCTTCTTTCTTGTATCCAAGGATATGAGGGGGTCTGATATGTCAGACAATGGCAACATAGAAGATGGCATTACAAATTTGGATGATACAGGAAACTCATTGCCTGAAGAAAGCAATAACCTAATTCCCAAGGAACCTGTTTCTACCATTATACTGATTAACTCTTCTATATGTACTATGCAAAGGATAGCTCTGCTGGAATATGGGAAACTGGTTGAGCTACTATTGGAACCTGTTAAAAGTACCGTGCAGTGTGATAGCGTTTATCTAGGGGTGGTTACAAAACTTGTCCCCCATATGGGTGGGGCATTTGTAAATATAGGGAATTCTAGACCATCTCTAATGGACATCAAACACAACAGGGAGCCTTTTATATTCCCTCCATTCCGAAGGACAAAGAAAACGGAAGCCAACAGTCATATGTTCGAAGAACACATGACTGCAGATGAAAATGAGCGCATGTCACTTGATTTTGAAGTGACTGATGACATCATGGAAATTAGCTCTCAGGACGATTTTGTAAAATCAATGCACAGTGACGATGAGGAGCATGAAATTGAGGATGCATTTGATCTCTCAGATGTTAAGGAACACATGAATGGTAGTATACTTGATTATGGCAAAGTAGAAGCTGATTATCCAGAAGGTGAAACTAGTGCCATTCCTGTTGCCATCAATGGTTCTAGCAATTCTCAAATGTCTCACCCCCAAAATAAGAAGAATGGTGCAAATACTGTCAGTCATGAAAATAAGTGGGCCCGAGTTCAGAAGGGCACTAAAGTTGTTGTACAAGTTGTCAAAGAGGGGTTGGGTTCAAAAGGACCCACACTGACTGCTTATCCAAAATTAAAGAGCAGATTCTGGATATTGATAACTCGTTGTGATAGAATTGGAATCTCCAAGAAAATCAGTGGTATTGAGCGTACACGATTGAAAGTCATTGCAAAAACTTTGCAGCCCCCAGGTTTTGGTCTGACTGTAAGGACTGTTGCTTCTGGCCATTCTTTAGAGGAACTGCAAAAAGATCTGGAAGGTTTGGTTTTAACTTGGAAGAATATCACGGAGCATGCAAAATCTGCAGCTCTTGCTGCAGATGAAGGTGTGGAAGGAGCCGTTCCTGTTATTCTGCATCGTGCAATGGGTCAGACGCTCTCAGTTGTGCAGGATTATTTTAATGAGACGGTTGAGAAAATGGTAGTTGACTCTCCAAGGACATATCATGAGGTTACCAATTACCTTCAGGAGATTGCCCCTGATCTTTGTGATCGAGTTGAGCTATACAGTAAAAGAATCCCTCTTTTTGATGAATTCAACATTGAAGAAGAGATCAACAATATGCTCAGTAAAAGGGTTCCACTTGCTAATGGAGGTTCTCTAGTGATTGAGCAAACTGAGGCATTAGTATCTGTTGATGTGAATGGGGGTCATGGGATGTTTGGTCAAGGAACCTCACAGGAGAAAGCTATTCTGGAAGTCAACCTTGCAGCTGCCAAACAGATTGCAAGGGAGTTACGACTGAGAGATATTGGGGGCATAATTGTGGTAGATTTCATTGATATGGCCGATGAATCAAATAGGAGATTGGTCTACGAAGAAGCTAAGAAGGCTGTTGAGAGAGATAGATCGATGGTTAAAGTCTCTGAACTGTCTAGGCATGGACTCATGGAAATAACAAGAAAGAGAGTACGACCTAGTGTGACATTTATGATTAGTGAACCATGTACTTGTTGTCATGCCACTGGGAGAGTAGAAGCCTTAGAGACCTCGTTCTCCAAAATTGAACAAGAAATTTCTCGATTGCTGGCAATGATGGAACGGAAACCAGACCCAGGGAACCCAAAATCTTGGCCAAAGTTCATTCTGAGAGTTGACCATCACATGTGTGACTACTTAACTTCTGGGAAAAGGACAAGACTTGCATTGTTGAGTAGTTCCCTCAAAGCTTGGATTCTACTAAAGGTGGCTAGAGGTTTCACTAGGGGTGCATTTGAGGTAAAACCATTTACAGATGAAAAGGCACACAAAGATCTGCGGCAAGTCACCATTTCAATGATTCGACCTACAGAAGCCAGAAGAACTAACAATCCTGGAAAAAGGGTGACCCTATTTCCGGTAAAGAAATGGAAGGGTGGTGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010239 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031425 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 RNase_E_G

Protein Analysis

948

Amino Acids

106.14

Weight (kDa)

5.47

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_20	PF00686	3 - 90	6.9e-14	Starch binding domain
RNase_E_G	PF10150	518 - 797	4.9e-86	Ribonuclease E/G family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270 AT2G04270
fragaria_vesca	FvH4_6g40410
malus_domestica	MD09G1130200.v1.1 MD17G1105400.v1.1
prunus_persica	Prupe.3G194900_v2.0.a1 Prupe.3G194900_v2.0.a1
pyrus_communis	pycom09g05330 pycom17g10950 pycom17g10970
rosa_chinensis	RchiOBHm_Chr2g0155641
rosa_laevigata	RLG00000020850
rosa_multiflora	Rmu_ssc0000430.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093600
rosa_rugosa	Rorug02G0448700 Rorug02G0448700
rosa_samantha	Rh2AG514800 Rh2BG525700 Rh2CG499700 Rh2DG534600
rosa_wichuraiana	Rw2G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	1673
AccI	GTMKAC	2 cut(s)	1312, 2292
AccII	CGCG	1 cut(s)	290
AciI	CCGC	2 cut(s)	290, 2737
AcoI	YGGCCR	3 cut(s)	1702, 2265, 2552
AcsI	RAATTY	7 cut(s)	172, 245, 517, 781, 1030, 2012, 2493
AcuI	CTGAAG	2 cut(s)	831, 1928
AfaI	GTAC	8 cut(s)	56, 261, 880, 949, 1494, 1630, 2391, 2428
AfiI	CCNNNNNNNGG	6 cut(s)	275, 1003, 1004, 1673, 2534, 2815
AflII	CTTAAG	1 cut(s)	463
AflIII	ACRYGT	1 cut(s)	2583
AhlI	ACTAGT	1 cut(s)	1358
AjnI	CCWGG	6 cut(s)	86, 235, 686, 1666, 2533, 2791
AleI	CACNNNNGTG	1 cut(s)	2586
AloI	GAACNNNNNNTCC	2 cut(s)	2773, 2805
Alw26I	GTCTC	8 cut(s)	120, 226, 327, 350, 1410, 1877, 2347, 2459
AlwNI	CAGNNNCTG	1 cut(s)	1566
Ama87I	CYCGRG	2 cut(s)	152, 1464
AoxI	GGCC	5 cut(s)	209, 1461, 1702, 2265, 2552
ApaI	GGGCCC	1 cut(s)	1465
ApeKI	GCWGC	5 cut(s)	1660, 1784, 1793, 2189, 2192
ApoI	RAATTY	7 cut(s)	172, 245, 517, 781, 1030, 2012, 2493
AspLEI	GCGC	1 cut(s)	1164
AspS9I	GGNCC	5 cut(s)	67, 239, 1461, 1462, 1526
AsuHPI	GGTGA	6 cut(s)	304, 617, 1364, 1400, 2737, 2815
AsuII	TTCGAA	1 cut(s)	1131
AvaI	CYCGRG	2 cut(s)	152, 1464
AvaII	GGWCC	3 cut(s)	67, 239, 1526
BaeGI	GKGCMC	2 cut(s)	1465, 1481
BalI	TGGCCA	2 cut(s)	1704, 2554
BanII	GRGCYC	3 cut(s)	344, 687, 1465
BbvI	GCAGC	5 cut(s)	1672, 1780, 1796, 2179, 2201
BccI	CCATC	8 cut(s)	596, 625, 764, 1048, 1385, 2326, 2509, 2586
BceAI	ACGGC	1 cut(s)	1802
BciT130I	CCWGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
BciVI	GTATCC	1 cut(s)	730
BcoDI	GTCTC	8 cut(s)	120, 226, 327, 350, 1410, 1877, 2347, 2459
BcuI	ACTAGT	1 cut(s)	1358
BfmI	CTRYAG	5 cut(s)	402, 1146, 1782, 1794, 2766
BfrI	CTTAAG	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	730
BglII	AGATCT	2 cut(s)	1729, 2731
BisI	GCNGC	6 cut(s)	1661, 1785, 1794, 2190, 2193, 2738
BlsI	GCNGC	6 cut(s)	1662, 1786, 1795, 2191, 2194, 2739
Bme1390I	CCNGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
Bme18I	GGWCC	3 cut(s)	67, 239, 1526
BmeT110I	CYCGRG	2 cut(s)	152, 1464
BmgT120I	GGNCC	5 cut(s)	67, 239, 1461, 1462, 1526
BmrFI	CCNGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
BmrI	ACTGGG	2 cut(s)	72, 2454
BmsI	GCATC	2 cut(s)	1258, 1843
BmuI	ACTGGG	2 cut(s)	72, 2454
BpmI	CTGGAG	2 cut(s)	375, 381
Bpu14I	TTCGAA	1 cut(s)	1131
Bsa29I	ATCGAT	1 cut(s)	2330
BsaI	GGTCTC	2 cut(s)	226, 2459
BsaWI	WCCGGW	1 cut(s)	2815
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 674, 704
Bsc4I	CCNNNNNNNGG	6 cut(s)	275, 1003, 1004, 1673, 2534, 2815
Bse1I	ACTGG	3 cut(s)	67, 921, 2449
Bse3DI	GCAATG	4 cut(s)	803, 1644, 1848, 2517
BseBI	CCWGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
BseCI	ATCGAT	1 cut(s)	2330
BseGI	GGATG	5 cut(s)	312, 418, 793, 1273, 2142
BseLI	CCNNNNNNNGG	6 cut(s)	275, 1003, 1004, 1673, 2534, 2815
BseMI	GCAATG	4 cut(s)	803, 1644, 1848, 2517
BseMII	CTCAG	8 cut(s)	399, 1226, 1296, 1872, 2059, 2088, 2213, 2558
BseNI	ACTGG	3 cut(s)	67, 921, 2449
BseRI	GAGGAG	2 cut(s)	695, 1265
BseSI	GKGCMC	2 cut(s)	1465, 1481
BseXI	GCAGC	5 cut(s)	1672, 1780, 1796, 2179, 2201
BsgI	GTGCAG	2 cut(s)	974, 1886
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	5 cut(s)	211, 1463, 1704, 2267, 2554
BshVI	ATCGAT	1 cut(s)	2330
BsiHKCI	CYCGRG	2 cut(s)	152, 1464
BsiSI	CCGG	1 cut(s)	2816
BslFI	GGGAC	3 cut(s)	80, 311, 980
BslI	CCNNNNNNNGG	6 cut(s)	275, 1003, 1004, 1673, 2534, 2815
BsmAI	GTCTC	8 cut(s)	120, 226, 327, 350, 1410, 1877, 2347, 2459
BsmBI	CGTCTC	1 cut(s)	1877
BsmFI	GGGAC	3 cut(s)	80, 311, 980
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	5 cut(s)	211, 1463, 1704, 2267, 2554
Bso31I	GGTCTC	2 cut(s)	226, 2459
BsoBI	CYCGRG	2 cut(s)	152, 1464
Bsp119I	TTCGAA	1 cut(s)	1131
Bsp120I	GGGCCC	1 cut(s)	1461
Bsp1286I	GDGCHC	4 cut(s)	344, 687, 1465, 1481
Bsp1407I	TGTACA	1 cut(s)	1492
Bsp143I	GATC	9 cut(s)	31, 574, 1276, 1729, 1960, 1969, 2031, 2327, 2731
Bsp19I	CCATGG	2 cut(s)	335, 474
BspACI	CCGC	2 cut(s)	290, 2737
BspANI	GGCC	5 cut(s)	211, 1463, 1704, 2267, 2554
BspCNI	CTCAG	8 cut(s)	398, 1225, 1295, 1871, 2058, 2089, 2214, 2559
BspDI	ATCGAT	1 cut(s)	2330
BspFNI	CGCG	1 cut(s)	290
BspHI	TCATGA	2 cut(s)	1447, 1924
BspMAI	CTGCAG	3 cut(s)	1150, 1786, 1798
BspT104I	TTCGAA	1 cut(s)	1131
BspTI	CTTAAG	1 cut(s)	463
BspTNI	GGTCTC	2 cut(s)	226, 2459
BsrDI	GCAATG	4 cut(s)	803, 1644, 1848, 2517
BsrGI	TGTACA	1 cut(s)	1492
BsrI	ACTGG	3 cut(s)	67, 921, 2449
BssMI	GATC	9 cut(s)	31, 574, 1276, 1729, 1960, 1969, 2031, 2327, 2731
BssNAI	GTATAC	1 cut(s)	1313
BssT1I	CCWWGG	5 cut(s)	335, 474, 723, 834, 1913
Bst1107I	GTATAC	1 cut(s)	1313
Bst2UI	CCWGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
Bst6I	CTCTTC	3 cut(s)	348, 874, 2022
BstAFI	CTTAAG	1 cut(s)	463
BstAPI	GCANNNNNTGC	3 cut(s)	620, 1781, 1790
BstAUI	TGTACA	1 cut(s)	1492
BstBI	TTCGAA	1 cut(s)	1131
BstC8I	GCNNGC	2 cut(s)	1773, 2508
BstDSI	CCRYGG	2 cut(s)	335, 474
BstEII	GGTNACC	3 cut(s)	605, 1930, 2803
BstF5I	GGATG	5 cut(s)	312, 418, 793, 1273, 2142
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	1164
BstKTI	GATC	9 cut(s)	34, 577, 1279, 1732, 1963, 1972, 2034, 2330, 2734
BstMAI	GTCTC	8 cut(s)	120, 226, 327, 350, 1410, 1877, 2347, 2459
BstMBI	GATC	9 cut(s)	31, 574, 1276, 1729, 1960, 1969, 2031, 2327, 2731
BstMWI	GCNNNNNNNGC	5 cut(s)	620, 1781, 1790, 1793, 2309
BstNI	CCWGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
BstNSI	RCATGY	4 cut(s)	131, 1168, 1775, 2587
BstPI	GGTNACC	3 cut(s)	605, 1930, 2803
BstSCI	CCNGG	6 cut(s)	86, 235, 686, 1666, 2533, 2791
BstSFI	CTRYAG	5 cut(s)	402, 1146, 1782, 1794, 2766
BstSLI	GKGCMC	2 cut(s)	1465, 1481
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	5 cut(s)	1672, 1780, 1796, 2179, 2201
BstX2I	RGATCY	2 cut(s)	1729, 2731
BstXI	CCANNNNNNTGG	2 cut(s)	1007, 2550
BstYI	RGATCY	2 cut(s)	1729, 2731
BstZ17I	GTATAC	1 cut(s)	1313
Bsu15I	ATCGAT	1 cut(s)	2330
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	5 cut(s)	211, 1463, 1704, 2267, 2554
BsuTUI	ATCGAT	1 cut(s)	2330
BtgI	CCRYGG	2 cut(s)	335, 474
BtsCI	GGATG	5 cut(s)	312, 418, 793, 1273, 2142
BtsI	GCAGTG	3 cut(s)	452, 621, 962
BtsIMutI	CAGTG	8 cut(s)	60, 452, 621, 962, 1246, 1532, 1621, 2442
Cac8I	GCNNGC	2 cut(s)	1773, 2508
CaiI	CAGNNNCTG	1 cut(s)	1566
CciI	TCATGA	2 cut(s)	1447, 1924
CfoI	GCGC	1 cut(s)	1164
Cfr13I	GGNCC	5 cut(s)	67, 239, 1461, 1462, 1526
ClaI	ATCGAT	1 cut(s)	2330
CseI	GACGC	1 cut(s)	1861
Csp6I	GTAC	8 cut(s)	55, 260, 879, 948, 1493, 1629, 2390, 2427
CviQI	GTAC	8 cut(s)	55, 260, 879, 948, 1493, 1629, 2390, 2427
DpnI	GATC	9 cut(s)	33, 576, 1278, 1731, 1962, 1971, 2033, 2329, 2733
DpnII	GATC	9 cut(s)	31, 574, 1276, 1729, 1960, 1969, 2031, 2327, 2731
DrdI	GACNNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	3 cut(s)	1702, 2265, 2552
Eam1104I	CTCTTC	3 cut(s)	348, 874, 2022
EarI	CTCTTC	3 cut(s)	348, 874, 2022
Eco130I	CCWWGG	5 cut(s)	335, 474, 723, 834, 1913
Eco24I	GRGCYC	3 cut(s)	344, 687, 1465
Eco31I	GGTCTC	2 cut(s)	226, 2459
Eco32I	GATATC	1 cut(s)	668
Eco47I	GGWCC	3 cut(s)	67, 239, 1526
Eco57I	CTGAAG	2 cut(s)	831, 1928
Eco88I	CYCGRG	2 cut(s)	152, 1464
Eco91I	GGTNACC	3 cut(s)	605, 1930, 2803
EcoO109I	RGGNCCY	2 cut(s)	67, 1526
EcoO65I	GGTNACC	3 cut(s)	605, 1930, 2803
EcoRI	GAATTC	3 cut(s)	245, 1030, 2012
EcoRII	CCWGG	6 cut(s)	86, 235, 686, 1666, 2533, 2791
EcoRV	GATATC	1 cut(s)	668
EcoT14I	CCWWGG	5 cut(s)	335, 474, 723, 834, 1913
EcoT22I	ATGCAT	1 cut(s)	1273
EcoT38I	GRGCYC	3 cut(s)	344, 687, 1465
ErhI	CCWWGG	5 cut(s)	335, 474, 723, 834, 1913
Esp3I	CGTCTC	1 cut(s)	1877
FalI	AAGNNNNNCTT	2 cut(s)	2169, 2201
FaqI	GGGAC	3 cut(s)	80, 311, 980
FauNDI	CATATG	2 cut(s)	1002, 1125
FblI	GTMKAC	2 cut(s)	1312, 2292
Fnu4HI	GCNGC	6 cut(s)	1661, 1785, 1794, 2190, 2193, 2738
FokI	GGATG	5 cut(s)	319, 425, 800, 1280, 2149
FriOI	GRGCYC	3 cut(s)	344, 687, 1465
Fsp4HI	GCNGC	6 cut(s)	1661, 1785, 1794, 2190, 2193, 2738
GlaI	GCGC	1 cut(s)	1163
GluI	GCNGC	6 cut(s)	1661, 1785, 1794, 2190, 2193, 2738
GsuI	CTGGAG	2 cut(s)	375, 381
HaeIII	GGCC	5 cut(s)	211, 1463, 1704, 2267, 2554
HapII	CCGG	1 cut(s)	2816
HgaI	GACGC	1 cut(s)	1861
HhaI	GCGC	1 cut(s)	1164
Hin6I	GCGC	1 cut(s)	1162
HinP1I	GCGC	1 cut(s)	1162
HincII	GTYRAC	4 cut(s)	274, 1906, 2182, 2575
HindII	GTYRAC	4 cut(s)	274, 1906, 2182, 2575
HindIII	AAGCTT	1 cut(s)	2646
HpaII	CCGG	1 cut(s)	2816
HphI	GGTGA	6 cut(s)	304, 617, 1364, 1400, 2737, 2815
Hpy166II	GTNNAC	9 cut(s)	274, 506, 1313, 1631, 1906, 2182, 2293, 2420, 2575
Hpy8I	GTNNAC	9 cut(s)	274, 506, 1313, 1631, 1906, 2182, 2293, 2420, 2575
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	5 cut(s)	620, 1781, 1790, 1793, 2309
HpySE526I	ACGT	1 cut(s)	57
HspAI	GCGC	1 cut(s)	1162
Kzo9I	GATC	9 cut(s)	31, 574, 1276, 1729, 1960, 1969, 2031, 2327, 2731
LmnI	GCTCC	8 cut(s)	89, 394, 400, 682, 1069, 1252, 1768, 1814
Lsp1109I	GCAGC	5 cut(s)	1672, 1780, 1796, 2179, 2201
LweI	GCATC	2 cut(s)	1258, 1843
MaeII	ACGT	1 cut(s)	57
MalI	GATC	9 cut(s)	33, 576, 1278, 1731, 1962, 1971, 2033, 2329, 2733
MboI	GATC	9 cut(s)	31, 574, 1276, 1729, 1960, 1969, 2031, 2327, 2731
MflI	RGATCY	2 cut(s)	1729, 2731
MhlI	GDGCHC	4 cut(s)	344, 687, 1465, 1481
MlsI	TGGCCA	2 cut(s)	1704, 2554
MluNI	TGGCCA	2 cut(s)	1704, 2554
MlyI	GAGTC	5 cut(s)	293, 458, 488, 1901, 2358
Mox20I	TGGCCA	2 cut(s)	1704, 2554
Mph1103I	ATGCAT	1 cut(s)	1273
MscI	TGGCCA	2 cut(s)	1704, 2554
MslI	CAYNNNNRTG	6 cut(s)	1005, 1302, 2243, 2261, 2586, 2753
Msp20I	TGGCCA	2 cut(s)	1704, 2554
MspA1I	CMGCKG	1 cut(s)	2192
MspCI	CTTAAG	1 cut(s)	463
MspI	CCGG	1 cut(s)	2816
MspR9I	CCNGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	5 cut(s)	620, 1781, 1790, 1793, 2309
NcoI	CCATGG	2 cut(s)	335, 474
NdeI	CATATG	2 cut(s)	1002, 1125
NdeII	GATC	9 cut(s)	31, 574, 1276, 1729, 1960, 1969, 2031, 2327, 2731
NmeAIII	GCCGAG	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	1273
NspI	RCATGY	4 cut(s)	131, 1168, 1775, 2587
NspV	TTCGAA	1 cut(s)	1131
OliI	CACNNNNGTG	1 cut(s)	2586
PaeI	GCATGC	1 cut(s)	1775
PaeR7I	CTCGAG	1 cut(s)	152
PagI	TCATGA	2 cut(s)	1447, 1924
PasI	CCCWGGG	1 cut(s)	2534
PciI	ACATGT	1 cut(s)	2583
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	6 cut(s)	1563, 1599, 1995, 2273, 2653, 2758
PflMI	CCANNNNNTGG	1 cut(s)	1673
PfoI	TCCNGGA	1 cut(s)	2791
PkrI	GCNGC	6 cut(s)	1662, 1786, 1795, 2191, 2194, 2739
PleI	GAGTC	5 cut(s)	293, 457, 488, 1901, 2358
PpsI	GAGTC	5 cut(s)	293, 457, 488, 1901, 2358
PpuMI	RGGWCCY	2 cut(s)	67, 1526
PscI	ACATGT	1 cut(s)	2583
Psp5II	RGGWCCY	2 cut(s)	67, 1526
Psp6I	CCWGG	6 cut(s)	86, 235, 686, 1666, 2533, 2791
PspEI	GGTNACC	3 cut(s)	605, 1930, 2803
PspGI	CCWGG	6 cut(s)	86, 235, 686, 1666, 2533, 2791
PspOMI	GGGCCC	1 cut(s)	1461
PspPI	GGNCC	5 cut(s)	67, 239, 1461, 1462, 1526
PspPPI	RGGWCCY	2 cut(s)	67, 1526
PstI	CTGCAG	3 cut(s)	1150, 1786, 1798
PstNI	CAGNNNCTG	1 cut(s)	1566
PsuI	RGATCY	2 cut(s)	1729, 2731
PvuII	CAGCTG	1 cut(s)	2192
RsaI	GTAC	8 cut(s)	56, 261, 880, 949, 1494, 1630, 2391, 2428
RsaNI	GTAC	8 cut(s)	55, 260, 879, 948, 1493, 1629, 2390, 2427
RseI	CAYNNNNRTG	6 cut(s)	1005, 1302, 2243, 2261, 2586, 2753
SatI	GCNGC	6 cut(s)	1661, 1785, 1794, 2190, 2193, 2738
Sau3AI	GATC	9 cut(s)	31, 574, 1276, 1729, 1960, 1969, 2031, 2327, 2731
Sau96I	GGNCC	5 cut(s)	67, 239, 1461, 1462, 1526
SchI	GAGTC	5 cut(s)	293, 458, 488, 1901, 2358
ScrFI	CCNGG	6 cut(s)	88, 237, 688, 1668, 2535, 2793
SduI	GDGCHC	4 cut(s)	344, 687, 1465, 1481
SfaNI	GCATC	2 cut(s)	1258, 1843
SfcI	CTRYAG	5 cut(s)	402, 1146, 1782, 1794, 2766
Sfr274I	CTCGAG	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	1131
SinI	GGWCC	3 cut(s)	67, 239, 1526
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	6 cut(s)	1005, 1302, 2243, 2261, 2586, 2753
SmlI	CTYRAG	2 cut(s)	152, 463
SmoI	CTYRAG	2 cut(s)	152, 463
SpeI	ACTAGT	1 cut(s)	1358
SphI	GCATGC	1 cut(s)	1775
SsiI	CCGC	2 cut(s)	290, 2737
StyD4I	CCNGG	6 cut(s)	86, 235, 686, 1666, 2533, 2791
StyI	CCWWGG	5 cut(s)	335, 474, 723, 834, 1913
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	7 cut(s)	24, 153, 1131, 1972, 2330, 2500, 2761
TatI	WGTACW	3 cut(s)	878, 1492, 2426
TauI	GCSGC	1 cut(s)	2740
TfiI	GAWTC	6 cut(s)	1563, 1599, 1995, 2273, 2653, 2758
TscAI	CASTG	8 cut(s)	67, 459, 621, 962, 1246, 1539, 1621, 2449
TseI	GCWGC	5 cut(s)	1660, 1784, 1793, 2189, 2192
TspGWI	ACGGA	4 cut(s)	674, 1124, 1781, 2536
TspRI	CASTG	8 cut(s)	67, 459, 621, 962, 1246, 1539, 1621, 2449
Van91I	CCANNNNNTGG	1 cut(s)	1673
Vha464I	CTTAAG	1 cut(s)	463
VpaK11BI	GGWCC	3 cut(s)	67, 239, 1526
XapI	RAATTY	7 cut(s)	172, 245, 517, 781, 1030, 2012, 2493
XbaI	TCTAGA	1 cut(s)	1034
XceI	RCATGY	4 cut(s)	131, 1168, 1775, 2587
XhoI	CTCGAG	1 cut(s)	152
XmiI	GTMKAC	2 cut(s)	1312, 2292
Zsp2I	ATGCAT	1 cut(s)	1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.