Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0017299

Physical Location & Seq

Genomic Coordinates Reverse (-)

26832709 .. 26834277

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1220200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTTTTGGTTATCGCCATACTCAACGATGGAACAATCATGACTATTTCCAAGGATAGGGTGAAGCCATCTCCTCTTCCAGACTCATGGAAGCTAAAGGAGATCTTCGCAACCGGCGTAGTCCTGGGCACCTACATGGCTGTCATGACTGTTGTTTTCTTCTGGGCTGCTCATGGCTCTGACTTTTTCACAGAACGATTTGGGGTAAGATCTATCAGGGGAAATTTTCCTGAGCTTACAGGAGCTATCTACCTTCAAGTGAGCATTATTAGTCAGGCACTCATCTTTGTTACTCGGTCCCGAAGCTGGTCTTATGTTGAACGCCCCGGTTTACTTCTCTTGGGAGCCTTTTTCATAGCACAGCTGATTGCTACCATCATTGCTGTTTATGCAAACTGGGGCTTTGCAAGAATCCGTGGCATTGGATGGGGATGGGCAGGGGTTATCTGGCTCTACAGCATTGTCACTTACATACCTTTGGACATTCTTAAGTTCATCATTCGATACATATTGAGCGGCAAGGCCTGGGATAATGTACTTGAGAATAAGACTGCTTTCACAACAAAGAAGGATTACGGAAAGGGAGACAGGGAAGCCCAATGGGCTACCGCTCAACGAACCCTCCACGGTCTGCAGCCTCCCGAGACAGCTGAGCTCTTCCATGACAAGAACTACAGAGAGTTGTCTGAAATCGCCGAACAGGCCAAGAAGCGGGCTGAAGTTGCTAGGTTGAGGGAGCTTAACACACTCAAGGGGCACGTCGAGTCGGTGGTGAAGCTCAAAGGACTGGACATCGACACCATTCAACAGCACTACACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

275

Amino Acids

31.01

Weight (kDa)

9.47

Isoelectric Point (pI)

25.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017299)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03990
malus_domestica	MD17G1220200.v1.1
pyrus_communis	pycom04g05220 pycom04g05230 pycom08g10790 pycom08g10810 pycom08g10850 pycom08g10860 pycom08g10920 pycom15g09900 pycom16g21600
rosa_multiflora	Rmu_co8358687.1_g000001 Rmu_sc0000301.1_g000012

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccBSI	CCGCTC	2 cut(s)	516, 611
AciI	CCGC	3 cut(s)	516, 609, 712
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	738
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	3 cut(s)	57, 306, 711
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	3 cut(s)	257, 320, 806
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	2 cut(s)	123, 524
AluBI	AGCT	9 cut(s)	94, 235, 245, 306, 364, 650, 655, 739, 778
AluI	AGCT	9 cut(s)	94, 235, 245, 306, 364, 650, 655, 739, 778
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	2 cut(s)	579, 638
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	2 cut(s)	522, 702
ApeKI	GCWGC	2 cut(s)	167, 634
ApoI	RAATTY	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	297
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	73, 784
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	297
BaeGI	GKGCMC	2 cut(s)	131, 759
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	154, 646
BccI	CCATC	5 cut(s)	23, 76, 383, 420, 426
BciT130I	CCWGG	2 cut(s)	125, 526
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	579, 638
BfaI	CTAG	1 cut(s)	726
BfmI	CTRYAG	3 cut(s)	454, 632, 673
BfrI	CTTAAG	1 cut(s)	488
BglI	GCCNNNNNGGC	2 cut(s)	602, 701
BglII	AGATCT	2 cut(s)	102, 209
BisI	GCNGC	3 cut(s)	168, 517, 635
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	3 cut(s)	169, 518, 636
Bme1390I	CCNGG	3 cut(s)	125, 327, 526
Bme18I	GGWCC	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	641
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	130, 299, 346
BmrFI	CCNGG	3 cut(s)	125, 327, 526
BmrI	ACTGGG	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	560, 734
BpuMI	CCSGG	1 cut(s)	327
BsaJI	CCNNGG	6 cut(s)	51, 124, 325, 415, 525, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 306, 711
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	401, 792
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	125, 526
BseDI	CCNNGG	6 cut(s)	51, 124, 325, 415, 525, 625
BseGI	GGATG	2 cut(s)	431, 437
BseLI	CCNNNNNNNGG	3 cut(s)	57, 306, 711
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	222, 642
BseNI	ACTGG	2 cut(s)	401, 792
BseRI	GAGGAG	1 cut(s)	63
BseSI	GKGCMC	2 cut(s)	131, 759
BseXI	GCAGC	2 cut(s)	154, 646
BshFI	GGCC	2 cut(s)	524, 704
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	114, 327
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	57, 306, 711
BsmAI	GTCTC	2 cut(s)	579, 638
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	524, 704
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	3 cut(s)	131, 657, 759
Bsp143I	GATC	2 cut(s)	102, 209
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	3 cut(s)	516, 609, 712
BspANI	GGCC	2 cut(s)	524, 704
BspCNI	CTCAG	2 cut(s)	223, 643
BspHI	TCATGA	2 cut(s)	39, 144
BspLI	GGNNCC	3 cut(s)	130, 299, 346
BspMAI	CTGCAG	1 cut(s)	636
BspQI	GCTCTTC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	488
BsrBI	CCGCTC	2 cut(s)	516, 611
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	401, 792
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	6 cut(s)	51, 124, 325, 415, 525, 625
BssMI	GATC	2 cut(s)	102, 209
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	125, 526
Bst4CI	ACNGT	3 cut(s)	151, 629, 820
Bst6I	CTCTTC	2 cut(s)	81, 662
BstAFI	CTTAAG	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	2 cut(s)	231, 651
BstDSI	CCRYGG	2 cut(s)	415, 625
BstF5I	GGATG	2 cut(s)	431, 437
BstKTI	GATC	2 cut(s)	105, 212
BstMAI	GTCTC	2 cut(s)	579, 638
BstMBI	GATC	2 cut(s)	102, 209
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 602, 701, 722
BstNI	CCWGG	2 cut(s)	125, 526
BstSCI	CCNGG	3 cut(s)	123, 325, 524
BstSFI	CTRYAG	3 cut(s)	454, 632, 673
BstSLI	GKGCMC	2 cut(s)	131, 759
BstV1I	GCAGC	2 cut(s)	154, 646
BstX2I	RGATCY	2 cut(s)	102, 209
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstYI	RGATCY	2 cut(s)	102, 209
BsuRI	GGCC	2 cut(s)	524, 704
BtgI	CCRYGG	2 cut(s)	415, 625
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	2 cut(s)	431, 437
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	714
CciI	TCATGA	2 cut(s)	39, 144
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	6 cut(s)	40, 87, 136, 145, 173, 662
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	2 cut(s)	231, 651
DpnI	GATC	2 cut(s)	104, 211
DpnII	GATC	2 cut(s)	102, 209
Eam1104I	CTCTTC	2 cut(s)	81, 662
EarI	CTCTTC	2 cut(s)	81, 662
Ecl136II	GAGCTC	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	655
Eco57I	CTGAAG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	123, 524
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	6 cut(s)	43, 90, 139, 148, 176, 665
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 295, 327
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	6 cut(s)	39, 86, 135, 144, 172, 661
FauI	CCCGC	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	168, 517, 635
FokI	GGATG	2 cut(s)	438, 444
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	3 cut(s)	168, 517, 635
FspBI	CTAG	1 cut(s)	726
GluI	GCNGC	3 cut(s)	168, 517, 635
HaeIII	GGCC	2 cut(s)	524, 704
HapII	CCGG	2 cut(s)	114, 327
Hin1II	CATG	6 cut(s)	43, 90, 139, 148, 176, 665
HinfI	GANTC	3 cut(s)	83, 411, 764
HpaII	CCGG	2 cut(s)	114, 327
HphI	GGTGA	2 cut(s)	73, 784
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	181, 688
Hpy188III	TCNNGA	6 cut(s)	40, 80, 145, 230, 300, 641
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	2 cut(s)	263, 562
HpyCH4III	ACNGT	3 cut(s)	151, 629, 820
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	3 cut(s)	392, 407, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 602, 701, 722
HpyF3I	CTNAG	2 cut(s)	231, 651
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	6 cut(s)	43, 90, 139, 148, 176, 665
Kzo9I	GATC	2 cut(s)	102, 209
LguI	GCTCTTC	1 cut(s)	662
LmnI	GCTCC	3 cut(s)	242, 344, 736
Lsp1109I	GCAGC	2 cut(s)	154, 646
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	2 cut(s)	289, 463
MalI	GATC	2 cut(s)	104, 211
MbiI	CCGCTC	2 cut(s)	516, 611
MboI	GATC	2 cut(s)	102, 209
MboII	GAAGA	4 cut(s)	68, 97, 151, 649
MflI	RGATCY	2 cut(s)	102, 209
MhlI	GDGCHC	3 cut(s)	131, 657, 759
MluCI	AATT	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	77, 773
MnlI	CCTC	4 cut(s)	84, 632, 648, 726
MseI	TTAA	2 cut(s)	489, 741
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	2 cut(s)	364, 650
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	2 cut(s)	114, 327
MspR9I	CCNGG	3 cut(s)	125, 327, 526
MvaI	CCWGG	2 cut(s)	125, 526
MwoI	GCNNNNNNNGC	4 cut(s)	389, 602, 701, 722
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	102, 209
NlaIII	CATG	6 cut(s)	43, 90, 139, 148, 176, 665
NlaIV	GGNNCC	3 cut(s)	130, 299, 346
NmuCI	GTSAC	1 cut(s)	463
PagI	TCATGA	2 cut(s)	39, 144
PceI	AGGCCT	1 cut(s)	524
PciSI	GCTCTTC	1 cut(s)	662
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	169, 518, 636
PleI	GAGTC	2 cut(s)	77, 772
PpsI	GAGTC	2 cut(s)	77, 772
Psp124BI	GAGCTC	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	123, 524
PspGI	CCWGG	2 cut(s)	123, 524
PspN4I	GGNNCC	3 cut(s)	130, 299, 346
PspPI	GGNCC	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	636
PsuI	RGATCY	2 cut(s)	102, 209
PvuII	CAGCTG	2 cut(s)	364, 650
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	657
SapI	GCTCTTC	1 cut(s)	662
SaqAI	TTAA	2 cut(s)	489, 741
SatI	GCNGC	3 cut(s)	168, 517, 635
Sau3AI	GATC	2 cut(s)	102, 209
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	2 cut(s)	77, 773
ScrFI	CCNGG	3 cut(s)	125, 327, 526
SduI	GDGCHC	3 cut(s)	131, 657, 759
SfcI	CTRYAG	3 cut(s)	454, 632, 673
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	3 cut(s)	488, 539, 749
SmoI	CTYRAG	3 cut(s)	488, 539, 749
Sse9I	AATT	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	524
SsiI	CCGC	3 cut(s)	516, 609, 712
SspMI	CTAG	1 cut(s)	726
SstI	GAGCTC	1 cut(s)	657
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	3 cut(s)	123, 325, 524
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	151, 629, 820
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	3 cut(s)	502, 762, 795
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	223
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	2 cut(s)	489, 741
Tru9I	TTAA	2 cut(s)	489, 741
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	167, 634
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	343, 484
TspGWI	ACGGA	2 cut(s)	404, 591
TspRI	CASTG	1 cut(s)	823
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	1 cut(s)	223
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.