pycom15g09900

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017299
Physical Location & Seq
Reverse (-)
6437447 .. 6438767
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09900.2

Sequence Viewer

Length: 693 bp
ATGGCACTAATGACTGTAGTCTTCTTCTGGCTTATGAGAGATACCGACTTCTTTTCGGATAAGTTTCATGTGAGATCTTTGAGTAATAGGCCTGAGCAAATGATGGCAGCGTTGTACTTACAAGTGAGTATTGTGAGCCAAGCCCTTATTTTCGTCACAAGGTCTCGCAGCTGGTCGTTTGTTGAACGCCCTGGACTTCTCTTACTTGGAGCTTTCATGATTGCTCAACTGGTTGCAACTCTCATAGCAGTGTATGCAAACTGGGGTTTTGCACGGATAGAGGGAGCTGGCTGGGGGTGGGCTGGTGTCATCTGGCTTTACAGTATAGTGACATATGTCCCTCTTGACTTGCTTAAATTTGCAATCCGATACATTCAAAGCGGGAAAGCGTGGAATAATCTTTTGGAGAACAAGACTGCCTTCACTACAAAGAAAGATTATGGAAAAGAGGAAAGAGAAGCACAGTGGGCTGCAGCACAGAGGACCCTTCATGGTCTTCAGCCACCTGAGACGAACAACCTTTTCAATGAGAAGAACAGTTACAGGGAACTTTCCGAGATTGCAGAACAAGCCAAGCGGAGGGCTGAGGTTGCAAGGCTTCGGGAGTTGCATACTCTGAAGGGTCACGTCGAGTCAGTTGTGAAGCTCAAAGGACTCGACATCGATACAATCCAACAACATTATACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

231

Amino Acids

26.46

Weight (kDa)

9.39

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 381, 577
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 2 cut(s) 482, 638
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 579
AgsI TTSAA 3 cut(s) 185, 377, 526
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 1 cut(s) 190
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 4 cut(s) 171, 212, 287, 646
AluI AGCT 4 cut(s) 171, 212, 287, 646
Alw26I GTCTC 2 cut(s) 168, 503
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 4 cut(s) 107, 168, 470, 473
ApoI RAATTY 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 483
AvaII GGWCC 1 cut(s) 483
BarI GAAGNNNNNNTAC 2 cut(s) 524, 556
BbsI GAAGAC 2 cut(s) 13, 488
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 4 cut(s) 119, 180, 457, 485
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 168, 503
BfmI CTRYAG 2 cut(s) 15, 471
BglII AGATCT 1 cut(s) 74
BisI GCNGC 4 cut(s) 108, 169, 471, 474
BlsI GCNGC 4 cut(s) 109, 170, 472, 475
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 483
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
BoxI GACNNNNGTC 2 cut(s) 17, 335
BpiI GAAGAC 2 cut(s) 13, 488
Bpu10I CCTNAGC 2 cut(s) 93, 585
Bsa29I ATCGAT 1 cut(s) 663
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 579
Bse1I ACTGG 2 cut(s) 234, 266
BseBI CCWGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 579
BseMII CTCAG 3 cut(s) 84, 498, 576
BseNI ACTGG 2 cut(s) 234, 266
BseXI GCAGC 4 cut(s) 119, 180, 457, 485
BseYI CCCAGC 1 cut(s) 291
BshFI GGCC 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 663
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 579
BsmAI GTCTC 2 cut(s) 168, 503
BsmBI CGTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 91
Bso31I GGTCTC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 74
BspACI CCGC 2 cut(s) 381, 577
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 3 cut(s) 85, 499, 577
BspDI ATCGAT 1 cut(s) 663
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 485
BspMAI CTGCAG 1 cut(s) 475
BspTNI GGTCTC 1 cut(s) 168
BsrI ACTGG 2 cut(s) 234, 266
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 5 cut(s) 16, 323, 465, 539, 688
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 3 cut(s) 93, 507, 585
BstKTI GATC 1 cut(s) 77
BstMAI GTCTC 2 cut(s) 168, 503
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 4 cut(s) 254, 467, 569, 590
BstNI CCWGG 1 cut(s) 192
BstPAI GACNNNNGTC 2 cut(s) 17, 335
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 2 cut(s) 15, 471
BstV1I GCAGC 4 cut(s) 119, 180, 457, 485
BstV2I GAAGAC 2 cut(s) 13, 488
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
Bsu15I ATCGAT 1 cut(s) 663
BsuRI GGCC 1 cut(s) 91
BsuTUI ATCGAT 1 cut(s) 663
BtrI CACGTC 1 cut(s) 628
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 470
Cac8I GCNNGC 1 cut(s) 289
CciI TCATGA 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 483
ClaI ATCGAT 1 cut(s) 663
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 68, 217, 491
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 3 cut(s) 93, 507, 585
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 2 cut(s) 482, 638
EcoO109I RGGNCCY 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 503
FaeI CATG 3 cut(s) 71, 220, 494
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 67, 216, 490
FauI CCCGC 1 cut(s) 374
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 4 cut(s) 108, 169, 471, 474
Fsp4HI GCNGC 4 cut(s) 108, 169, 471, 474
GluI GCNGC 4 cut(s) 108, 169, 471, 474
GsaI CCCAGC 1 cut(s) 295
HaeIII GGCC 1 cut(s) 91
Hin1II CATG 3 cut(s) 71, 220, 494
HinfI GANTC 2 cut(s) 632, 654
Hpy188I TCNGA 4 cut(s) 58, 368, 556, 618
Hpy188III TCNNGA 3 cut(s) 217, 344, 602
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 3 cut(s) 430, 497, 613
HpyCH4III ACNGT 5 cut(s) 16, 323, 465, 539, 688
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 8 cut(s) 236, 257, 272, 362, 473, 563, 593, 610
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 467, 569, 590
HpyF3I CTNAG 3 cut(s) 93, 507, 585
HpySE526I ACGT 1 cut(s) 627
Hsp92II CATG 3 cut(s) 71, 220, 494
Kzo9I GATC 1 cut(s) 74
LmnI GCTCC 2 cut(s) 209, 284
Lsp1109I GCAGC 4 cut(s) 119, 180, 457, 485
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 4 cut(s) 154, 328, 539, 623
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 4 cut(s) 13, 16, 488, 544
MflI RGATCY 1 cut(s) 74
MluCI AATT 1 cut(s) 356
MlyI GAGTC 2 cut(s) 641, 648
MnlI CCTC 6 cut(s) 274, 351, 442, 474, 573, 580
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 254, 467, 569, 590
NdeI CATATG 1 cut(s) 334
NdeII GATC 1 cut(s) 74
NlaIII CATG 3 cut(s) 71, 220, 494
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 3 cut(s) 154, 328, 623
PagI TCATGA 1 cut(s) 216
PceI AGGCCT 1 cut(s) 91
PkrI GCNGC 4 cut(s) 109, 170, 472, 475
PleI GAGTC 2 cut(s) 640, 648
PpsI GAGTC 2 cut(s) 640, 648
PpuMI RGGWCCY 1 cut(s) 483
PshAI GACNNNNGTC 2 cut(s) 17, 335
Psp5II RGGWCCY 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 291
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 485
PspPI GGNCC 1 cut(s) 483
PspPPI RGGWCCY 1 cut(s) 483
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 171
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 4 cut(s) 108, 169, 471, 474
Sau3AI GATC 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 641, 648
ScrFI CCNGG 1 cut(s) 192
SetI ASST 9 cut(s) 164, 173, 214, 289, 508, 522, 591, 630, 648
SfcI CTRYAG 2 cut(s) 15, 471
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 1 cut(s) 356
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 2 cut(s) 381, 577
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 5 cut(s) 16, 323, 465, 539, 688
TaiI ACGT 1 cut(s) 630
TaqI TCGA 3 cut(s) 630, 657, 663
TasI AATT 1 cut(s) 356
TatI WGTACW 1 cut(s) 114
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 255, 470
TseFI GTSAC 3 cut(s) 154, 328, 623
TseI GCWGC 4 cut(s) 107, 168, 470, 473
Tsp45I GTSAC 3 cut(s) 154, 328, 623
TspDTI ATGAA 3 cut(s) 56, 205, 479
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 2 cut(s) 255, 470
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.