Rmu_co8358687.1_g000001

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8358687.1
OG0017299
Physical Location & Seq
Reverse (-)
264 .. 942
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8358687.1_g000001.1.cds

Sequence Viewer

Length: 354 bp
atgctacttgatcctatcaaatttgctgtccgctacgcactcagtggacaggcatggggtttagtagtagaccaaagaactgcatttactagcaaaaaggattttggaaaggaatctcgcgaggctgcatgggcagctgaacagcgaacgctacatggactgcaatctggtgaagggaaaatattttcagagaagagcacttttagggacattaatctcatggcagaagaagctaaaaggcgtgcagagattgcaaggatgagggagcttcacactctcaaaggcaaggtggaatcatttgcaaagcttaagggtttggatattgatgccatgaaccaaaactacactgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

117

Amino Acids

13.25

Weight (kDa)

9.47

Isoelectric Point (pI)

24.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 69
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 20
AdeI CACNNNGTG 1 cut(s) 44
AflII CTTAAG 1 cut(s) 308
AluBI AGCT 4 cut(s) 137, 233, 268, 307
AluI AGCT 4 cut(s) 137, 233, 268, 307
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 125, 134
ApoI RAATTY 1 cut(s) 20
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AseI ATTAAT 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 112, 146
BfaI CTAG 1 cut(s) 90
BfrI CTTAAG 1 cut(s) 308
BisI GCNGC 2 cut(s) 126, 135
BlsI GCNGC 2 cut(s) 127, 136
BmsI GCATC 1 cut(s) 316
BseGI GGATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 112, 146
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 200
BslFI GGGAC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 10
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 1 cut(s) 120
BspPI GGATC 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 188
BspTI CTTAAG 1 cut(s) 308
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 131, 134, 230, 251
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 112, 146
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 49, 345
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 243
CviAII CATG 5 cut(s) 54, 129, 155, 220, 331
CviJI RGCY 5 cut(s) 125, 137, 233, 268, 307
CviKI_1 RGCY 5 cut(s) 125, 137, 233, 268, 307
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
FaeI CATG 5 cut(s) 57, 132, 158, 223, 334
FaiI YATR 5 cut(s) 55, 130, 156, 221, 332
FaqI GGGAC 1 cut(s) 221
FatI CATG 5 cut(s) 53, 128, 154, 219, 330
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 126, 135
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 2 cut(s) 126, 135
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 126, 135
Hin1II CATG 5 cut(s) 57, 132, 158, 223, 334
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 113, 293
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 47, 70
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 47, 70
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 6 cut(s) 83, 128, 163, 245, 254, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 134, 230, 251
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 5 cut(s) 57, 132, 158, 223, 334
Kzo9I GATC 1 cut(s) 10
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 2 cut(s) 35, 153
Lsp1109I GCAGC 2 cut(s) 112, 146
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 90
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 205, 239
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 20
MnlI CCTC 2 cut(s) 115, 255
MseI TTAA 2 cut(s) 213, 309
MspA1I CMGCKG 1 cut(s) 137
MspCI CTTAAG 1 cut(s) 308
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 131, 134, 230, 251
NdeII GATC 1 cut(s) 10
NlaIII CATG 5 cut(s) 57, 132, 158, 223, 334
NruI TCGCGA 1 cut(s) 120
PciSI GCTCTTC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 113, 293
PkrI GCNGC 2 cut(s) 127, 136
PshBI ATTAAT 1 cut(s) 213
PsrI GAACNNNNNNTAC 3 cut(s) 70, 102, 326
PvuII CAGCTG 1 cut(s) 137
RruI TCGCGA 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 213, 309
SatI GCNGC 2 cut(s) 126, 135
Sau3AI GATC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 200
SetI ASST 5 cut(s) 139, 235, 270, 291, 309
SfaNI GCATC 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 20
SsiI CCGC 1 cut(s) 31
SspI AATATT 1 cut(s) 183
SspMI CTAG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 349
TasI AATT 1 cut(s) 20
TfiI GAWTC 2 cut(s) 113, 293
Tru1I TTAA 2 cut(s) 213, 309
Tru9I TTAA 2 cut(s) 213, 309
TscAI CASTG 2 cut(s) 49, 352
TseI GCWGC 2 cut(s) 125, 134
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 2 cut(s) 49, 352
Vha464I CTTAAG 1 cut(s) 308
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.