pycom08g10790

Plasma membrane ATPase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
9034387 .. 9035724
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10790.2

Sequence Viewer

Length: 405 bp
ATGGGCGGAGCTACAGTTGGGCACACCAGATGGGTGCTCGATGCAATCCCGCAAGTTGCAACTCTCATAGCAGTCTATGCAAACTGGTGTTTTGCACGGATAAAAGGAGCTGGCTGGGGGTGGGCTGGTGTCATCTGGCTTCACAGTATAGTGACATATGTCCCTCTTGACTTTCTTAAATTCGCAATCCGATACATTCAAAGCGGAAAAGCGTGGAATAATCTTTTGGAGAATAAGAAAGATTATGGGAAAGAGGAGAGAGAAGCACAGTGGGCTGCAGCACAGAGGACCCTTCACGGTCTTCAGCCACCTGAAACGAACAACCTTTTCAATGAGAAGAACAGTTACAGGGAGCTTTCCGAGATTGCAGAACAAGCGAAGCGGAGGGCTGAGGTTGCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.26

Weight (kDa)

9.33

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 6, 50, 204, 382
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 287
AgsI TTSAA 2 cut(s) 200, 331
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 11, 110, 355
AluI AGCT 3 cut(s) 11, 110, 355
Alw21I GWGCWC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 275, 278
ApoI RAATTY 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 288
AvaII GGWCC 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 262, 290
BccI CCATC 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 12, 276
BisI GCNGC 2 cut(s) 276, 279
BlsI GCNGC 2 cut(s) 277, 280
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 290
BmsI GCATC 1 cut(s) 31
BoxI GACNNNNGTC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 390
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 2 cut(s) 262, 290
BseYI CCCAGC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 39
BslFI GGGAC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 24, 39
BspACI CCGC 4 cut(s) 6, 50, 204, 382
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 290
BspMAI CTGCAG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 89
Bst4CI ACNGT 5 cut(s) 16, 146, 270, 299, 344
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 390
BstMWI GCNNNNNNNGC 4 cut(s) 77, 272, 374, 395
BstPAI GACNNNNGTC 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 12, 276
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 262, 290
BstV2I GAAGAC 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 288
CviJI RGCY 9 cut(s) 11, 110, 114, 125, 139, 275, 307, 355, 389
CviKI_1 RGCY 9 cut(s) 11, 110, 114, 125, 139, 275, 307, 355, 389
DdeI CTNAG 1 cut(s) 390
EciI GGCGGA 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 288
FaiI YATR 6 cut(s) 68, 78, 149, 157, 159, 246
FaqI GGGAC 1 cut(s) 146
FauI CCCGC 1 cut(s) 57
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 276, 279
Fsp4HI GCNGC 2 cut(s) 276, 279
GluI GCNGC 2 cut(s) 276, 279
GsaI CCCAGC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 191, 361
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 5 cut(s) 16, 146, 270, 299, 344
HpyCH4V TGCA 7 cut(s) 44, 59, 80, 95, 278, 368, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 272, 374, 395
HpyF3I CTNAG 1 cut(s) 390
LmnI GCTCC 3 cut(s) 8, 107, 352
LpnPI CCDG 8 cut(s) 40, 70, 96, 100, 111, 121, 324, 334
Lsp1109I GCAGC 2 cut(s) 262, 290
LweI GCATC 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 151, 344
MboII GAAGA 2 cut(s) 293, 349
MhlI GDGCHC 2 cut(s) 24, 39
MluCI AATT 1 cut(s) 179
MnlI CCTC 5 cut(s) 174, 247, 279, 378, 385
MseI TTAA 1 cut(s) 177
MwoI GCNNNNNNNGC 4 cut(s) 77, 272, 374, 395
NdeI CATATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 277, 280
PpuMI RGGWCCY 1 cut(s) 288
PshAI GACNNNNGTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 288
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 288
PspPPI RGGWCCY 1 cut(s) 288
PstI CTGCAG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 276, 279
Sau96I GGNCC 1 cut(s) 288
SduI GDGCHC 2 cut(s) 24, 39
SetI ASST 7 cut(s) 13, 112, 313, 327, 357, 396, 404
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 2 cut(s) 12, 276
SinI GGWCC 1 cut(s) 288
Sse9I AATT 1 cut(s) 179
SsiI CCGC 4 cut(s) 6, 50, 204, 382
TaaI ACNGT 5 cut(s) 16, 146, 270, 299, 344
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 179
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 275
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 275, 278
Tsp45I GTSAC 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.