pycom08g10850

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017299
Physical Location & Seq
Reverse (-)
9083122 .. 9085378
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10850.2

Sequence Viewer

Length: 432 bp
ATGTTGCATTCTGCTACATTAGAAGCACAGTGGGCTGCAGCACAGAGGACCCTTCACGGTCTTCAGCCACCTGAAACAACCAACCTTTTCAATGAGAAGAACAGTTACAGGGAGCTTTCCGAGATTGCAAAACAAGCCAAGCGGAGGGCTGAGGTTGCAAGTCGTTTAGGTGGCTACTGCAGCTGCACAAGGACGTGCCAAAAGCCTCCCGGTTCAATGCCGAAGGGTTGGACTTCACCGTTAATGTCTGCACTATTCGATGGGCGGAGCTACAGTTCGGCTCACTCAAGCTTTCCCACATGCAATCCCCTAAGTAAACTATGTCTTTCTCCTTTCTCTGAGATTGGGTGCTCGATGCACACCAGATGTTTGATGATTTGTGTAAACCTTTGCCACAAACTATACTGCTTGTTCTTGTTTTTCGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

144

Amino Acids

15.94

Weight (kDa)

9.0

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 265
AcuI CTGAAG 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 91, 216
AjiI CACGTC 1 cut(s) 195
AloI GAACNNNNNNTCC 2 cut(s) 259, 291
AluBI AGCT 4 cut(s) 115, 183, 270, 291
AluI AGCT 4 cut(s) 115, 183, 270, 291
Alw21I GWGCWC 1 cut(s) 353
ApeKI GCWGC 4 cut(s) 35, 38, 180, 183
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 228
AvaII GGWCC 1 cut(s) 48
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 353
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 4 cut(s) 22, 50, 170, 192
BccI CCATC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 210
BfmI CTRYAG 3 cut(s) 36, 178, 271
BisI GCNGC 4 cut(s) 36, 39, 181, 184
BlsI GCNGC 4 cut(s) 37, 40, 182, 185
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 141, 330
BseXI GCAGC 4 cut(s) 22, 50, 170, 192
BsgI GTGCAG 2 cut(s) 169, 234
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 144
BsmI GAATGC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 353
BspACI CCGC 2 cut(s) 142, 265
BspCNI CTCAG 2 cut(s) 142, 331
BspLI GGNNCC 1 cut(s) 50
BspMAI CTGCAG 2 cut(s) 40, 182
Bst4CI ACNGT 5 cut(s) 30, 59, 104, 240, 275
BstDEI CTNAG 3 cut(s) 150, 311, 339
BstMWI GCNNNNNNNGC 4 cut(s) 32, 134, 155, 180
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 3 cut(s) 36, 178, 271
BstV1I GCAGC 4 cut(s) 22, 50, 170, 192
BstV2I GAAGAC 1 cut(s) 53
BtrI CACGTC 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 1 cut(s) 300
DdeI CTNAG 3 cut(s) 150, 311, 339
EciI GGCGGA 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 48
FaeI CATG 1 cut(s) 303
FaiI YATR 3 cut(s) 301, 322, 403
FatI CATG 1 cut(s) 299
Fnu4HI GCNGC 4 cut(s) 36, 39, 181, 184
Fsp4HI GCNGC 4 cut(s) 36, 39, 181, 184
GluI GCNGC 4 cut(s) 36, 39, 181, 184
HapII CCGG 1 cut(s) 210
Hin1II CATG 1 cut(s) 303
HindIII AAGCTT 1 cut(s) 289
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 2 cut(s) 317, 385
Hpy188I TCNGA 2 cut(s) 121, 340
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 2 cut(s) 317, 385
HpyAV CCTTC 2 cut(s) 62, 217
HpyCH4III ACNGT 5 cut(s) 30, 59, 104, 240, 275
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 9 cut(s) 7, 38, 128, 158, 180, 186, 251, 303, 358
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 134, 155, 180
HpyF3I CTNAG 3 cut(s) 150, 311, 339
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 1 cut(s) 303
LmnI GCTCC 2 cut(s) 112, 267
LpnPI CCDG 4 cut(s) 84, 94, 223, 376
Lsp1109I GCAGC 4 cut(s) 22, 50, 170, 192
LweI GCATC 1 cut(s) 345
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 2 cut(s) 53, 109
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 4 cut(s) 39, 138, 145, 216
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 183
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 7
MwoI GCNNNNNNNGC 4 cut(s) 32, 134, 155, 180
NciI CCSGG 1 cut(s) 210
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 1 cut(s) 50
NspI RCATGY 1 cut(s) 303
PctI GAATGC 1 cut(s) 7
PkrI GCNGC 4 cut(s) 37, 40, 182, 185
PpuMI RGGWCCY 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 48
PspPPI RGGWCCY 1 cut(s) 48
PstI CTGCAG 2 cut(s) 40, 182
PvuII CAGCTG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 4 cut(s) 36, 39, 181, 184
Sau96I GGNCC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 1 cut(s) 345
SfcI CTRYAG 3 cut(s) 36, 178, 271
SinI GGWCC 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 1 cut(s) 427
SsiI CCGC 2 cut(s) 142, 265
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 5 cut(s) 30, 59, 104, 240, 275
TaiI ACGT 1 cut(s) 197
TaqI TCGA 2 cut(s) 258, 353
TasI AATT 1 cut(s) 427
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 35
TseI GCWGC 4 cut(s) 35, 38, 180, 183
TspRI CASTG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 48
XceI RCATGY 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.